Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:57:31 (2143576): wrapper (7.7.26015): starting
19:57:31 (2143576): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 19:57:31] Arguments: --nthreads 8
[2025-11-27 19:57:31] Threads: 8
[2025-11-27 19:57:31] Checking for CVMFS
[2025-11-27 19:57:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 19:57:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 19:57:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 19:57:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 19:57:32] 2.13.2.0 6751 36535 247456 153391 3 434 37685491 40960001 24344 16776704 0 114037318 99.593 121918582 38088 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 19:57:32] CVMFS is ok
[2025-11-27 19:57:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 19:57:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 19:57:32] Further information can be found at the LHC@home message board.
[2025-11-27 19:57:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 19:57:32] Checking for apptainer binary...
[2025-11-27 19:57:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 19:57:32] Running /usr/bin/apptainer --version
[2025-11-27 19:57:32] apptainer version 1.4.4-1.el9
[2025-11-27 19:57:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 19:57:32] c-212-7.aglt2.org
[2025-11-27 19:57:32] apptainer works
[2025-11-27 19:57:32] Set ATHENA_PROC_NUMBER=8
[2025-11-27 19:57:32] Set ATHENA_CORE_NUMBER=8
[2025-11-27 19:57:32] Starting ATLAS job with PandaID=6898214508
[2025-11-27 19:57:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:06 (2143576): BOINC client no longer exists - exiting
01:20:06 (2143576): timer handler: client dead, exiting
01:28:48 (3210755): wrapper (7.7.26015): starting
01:28:48 (3210755): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 01:28:48] Arguments: --nthreads 8
[2025-11-28 01:28:48] Threads: 8
[2025-11-28 01:28:48] This job has been restarted, cleaning up previous attempt
[2025-11-28 01:28:48] Checking for CVMFS
[2025-11-28 01:28:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:28:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:28:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:28:49] 2.13.2.0 6751 36866 250176 153400 1 323 38653714 40960001 18177 16776704 0 115684141 99.600 122054413 38081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 01:28:49] CVMFS is ok
[2025-11-28 01:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 01:28:49] Further information can be found at the LHC@home message board.
[2025-11-28 01:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:28:49] Checking for apptainer binary...
[2025-11-28 01:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:28:49] Running /usr/bin/apptainer --version
[2025-11-28 01:28:49] apptainer version 1.4.4-1.el9
[2025-11-28 01:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:28:49] c-212-7.aglt2.org
[2025-11-28 01:28:49] apptainer works
[2025-11-28 01:28:49] Set ATHENA_PROC_NUMBER=8
[2025-11-28 01:28:49] Set ATHENA_CORE_NUMBER=8
[2025-11-28 01:28:49] Starting ATLAS job with PandaID=6898214508
[2025-11-28 01:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:57:41]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:57:41] 2025-11-28 18:57:07,189 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2990.992510416668
[2025-11-28 13:57:41] 2025-11-28 18:57:07,205 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898214508/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,206 | INFO     | extracted standard info from prmon json
[2025-11-28 13:57:41] 2025-11-28 18:57:07,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 13:57:41] 2025-11-28 18:57:07,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 13:57:41] 2025-11-28 18:57:07,216 | INFO     | fitting pss+swap vs Time
[2025-11-28 13:57:41] 2025-11-28 18:57:07,217 | INFO     | sum of square deviations: 123124189349.17839
[2025-11-28 13:57:41] 2025-11-28 18:57:07,244 | INFO     | sum of deviations: 1118031712471.5679
[2025-11-28 13:57:41] 2025-11-28 18:57:07,245 | INFO     | mean x: 1764333770.5278912
[2025-11-28 13:57:41] 2025-11-28 18:57:07,245 | INFO     | mean y: 2857980.5088435374
[2025-11-28 13:57:41] 2025-11-28 18:57:07,245 | INFO     | intersect: -16018210805.905704
[2025-11-28 13:57:41] 2025-11-28 18:57:07,245 | INFO     | chi2: 4.909361904406874
[2025-11-28 13:57:41] 2025-11-28 18:57:07,246 | INFO     | sum of square deviations: 120628642290.2753
[2025-11-28 13:57:41] 2025-11-28 18:57:07,256 | INFO     | sum of deviations: 1308168049818.4768
[2025-11-28 13:57:41] 2025-11-28 18:57:07,257 | INFO     | mean x: 1764333618.0315068
[2025-11-28 13:57:41] 2025-11-28 18:57:07,257 | INFO     | mean y: 2869588.4575342466
[2025-11-28 13:57:41] 2025-11-28 18:57:07,257 | INFO     | intersect: -19130603395.30928
[2025-11-28 13:57:41] 2025-11-28 18:57:07,257 | INFO     | chi2: 2.81762653857234
[2025-11-28 13:57:41] 2025-11-28 18:57:07,258 | INFO     | current chi2=2.81762653857234 (change=42.60707209132198 %)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,258 | INFO     | sum of square deviations: 118166871600.61229
[2025-11-28 13:57:41] 2025-11-28 18:57:07,269 | INFO     | sum of deviations: 1359556094754.4807
[2025-11-28 13:57:41] 2025-11-28 18:57:07,270 | INFO     | mean x: 1764333465.5296552
[2025-11-28 13:57:41] 2025-11-28 18:57:07,270 | INFO     | mean y: 2872762.28
[2025-11-28 13:57:41] 2025-11-28 18:57:07,270 | INFO     | intersect: -20296474116.83048
[2025-11-28 13:57:41] 2025-11-28 18:57:07,271 | INFO     | chi2: 2.4900622095759317
[2025-11-28 13:57:41] 2025-11-28 18:57:07,271 | INFO     | current chi2=2.4900622095759317 (change=11.625541018732074 %)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,271 | INFO     | right removable region: 724
[2025-11-28 13:57:41] 2025-11-28 18:57:07,272 | INFO     | sum of square deviations: 120628495034.39568
[2025-11-28 13:57:41] 2025-11-28 18:57:07,282 | INFO     | sum of deviations: 930533909955.8485
[2025-11-28 13:57:41] 2025-11-28 18:57:07,282 | INFO     | mean x: 1764333923.028767
[2025-11-28 13:57:41] 2025-11-28 18:57:07,282 | INFO     | mean y: 2869413.8643835615
[2025-11-28 13:57:41] 2025-11-28 18:57:07,282 | INFO     | intersect: -13607285826.782274
[2025-11-28 13:57:41] 2025-11-28 18:57:07,283 | INFO     | chi2: 2.768481311456344
[2025-11-28 13:57:41] 2025-11-28 18:57:07,283 | INFO     | current chi2=2.768481311456344 (change=43.60812330883114 %)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,284 | INFO     | sum of square deviations: 118166844148.7252
[2025-11-28 13:57:41] 2025-11-28 18:57:07,294 | INFO     | sum of deviations: 869150036519.3022
[2025-11-28 13:57:41] 2025-11-28 18:57:07,294 | INFO     | mean x: 1764334075.5268965
[2025-11-28 13:57:41] 2025-11-28 18:57:07,294 | INFO     | mean y: 2873215.9075862067
[2025-11-28 13:57:41] 2025-11-28 18:57:07,294 | INFO     | intersect: -12974295102.52884
[2025-11-28 13:57:41] 2025-11-28 18:57:07,295 | INFO     | chi2: 2.6762108343513398
[2025-11-28 13:57:41] 2025-11-28 18:57:07,295 | INFO     | current chi2=2.6762108343513398 (change=3.3328914565244316 %)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,295 | INFO     | left removable region: 20
[2025-11-28 13:57:41] 2025-11-28 18:57:07,296 | INFO     | sum of square deviations: 108193168400.37381
[2025-11-28 13:57:41] 2025-11-28 18:57:07,306 | INFO     | sum of deviations: 1012033424964.8801
[2025-11-28 13:57:41] 2025-11-28 18:57:07,306 | INFO     | mean x: 1764334045.0298295
[2025-11-28 13:57:41] 2025-11-28 18:57:07,306 | INFO     | mean y: 2894449.9105113638
[2025-11-28 13:57:41] 2025-11-28 18:57:07,306 | INFO     | intersect: -16500596969.862997
[2025-11-28 13:57:41] 2025-11-28 18:57:07,307 | INFO     | chi2: 0.17148101204953092
[2025-11-28 13:57:41] 2025-11-28 18:57:07,307 | INFO     | current memory leak: 9.35 B/s (using 704 data points, chi2=0.17)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | could have reported an average CPU frequency of 2949 MHz (28 samples)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | ..............................
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . Timing measurements:
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . get job = 0 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . initial setup = 2 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . payload setup = 9 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . stage-in = 0 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,308 | INFO     | . payload execution = 44839 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,309 | INFO     | . stage-out = 3 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,309 | INFO     | . log creation = 0 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,309 | INFO     | ..............................
[2025-11-28 13:57:41] 2025-11-28 18:57:07,491 | INFO     | time since job start (44882s) is within the limit (172800.0s)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,864 | INFO     | 
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | job summary report
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | --------------------------------------------------
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | PanDA job id: 6898214508
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | task id: 47556161
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | errors: (none)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 13:57:41] 2025-11-28 18:57:07,865 | INFO     | pilot state: finished 
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | transexitcode: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | exeerrorcode: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | exeerrordiag: 
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | exitcode: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | exitmsg: OK
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | cpuconsumptiontime: 216079 s
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | nevents: 1000
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | neventsw: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | pid: 3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | pgrp: 3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | corecount: 8
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | event service: False
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | sizes: {0: 2284093, 1: 2284292, 8: 2284554, 12: 2284582, 44849: 2330569, 44854: 2339563, 44857: 2339747, 44864: 2339993}
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | --------------------------------------------------
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | 
[2025-11-28 13:57:41] 2025-11-28 18:57:07,866 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | job 6898214508 has completed (purged errors)
[2025-11-28 13:57:41] 2025-11-28 18:57:07,897 | INFO     | overall cleanup function is called
[2025-11-28 13:57:41] 2025-11-28 18:57:08,928 | INFO     | --- collectZombieJob: --- 10, [3280819]
[2025-11-28 13:57:41] 2025-11-28 18:57:08,928 | INFO     | zombie collector waiting for pid 3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:08,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 13:57:41] 2025-11-28 18:57:08,928 | INFO     | collected zombie processes
[2025-11-28 13:57:41] 2025-11-28 18:57:08,928 | INFO     | will attempt to kill all subprocesses of pid=3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:09,353 | INFO     | process IDs to be killed: [3280819] (in reverse order)
[2025-11-28 13:57:41] 2025-11-28 18:57:09,508 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 13:57:41] 2025-11-28 18:57:09,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 13:57:41] 2025-11-28 18:57:09,528 | INFO     | did not find any defunct processes belonging to 3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:09,548 | INFO     | did not find any defunct processes belonging to 3280819
[2025-11-28 13:57:41] 2025-11-28 18:57:09,550 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 13:57:41] 2025-11-28 18:57:09,550 | INFO     | ready for new job
[2025-11-28 13:57:41] 2025-11-28 18:57:09,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 13:57:41] 2025-11-28 18:57:09,555 | INFO     | ***************************************
[2025-11-28 13:57:41] 2025-11-28 18:57:09,556 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 13:57:41] 2025-11-28 18:57:09,556 | INFO     | ***************************************
[2025-11-28 13:57:41] 2025-11-28 18:57:09,556 | INFO     | 
[2025-11-28 13:57:41] 2025-11-28 18:57:09,561 | INFO     | architecture information:
[2025-11-28 13:57:41] 2025-11-28 18:57:09,570 | INFO     | executing command: cat /etc/os-release
[2025-11-28 13:57:41] 2025-11-28 18:57:09,596 | INFO     | cat /etc/os-release:
[2025-11-28 13:57:41] NAME="CentOS Linux"
[2025-11-28 13:57:41] VERSION="7 (Core)"
[2025-11-28 13:57:41] ID="centos"
[2025-11-28 13:57:41] ID_LIKE="rhel fedora"
[2025-11-28 13:57:41] VERSION_ID="7"
[2025-11-28 13:57:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:57:41] ANSI_COLOR="0;31"
[2025-11-28 13:57:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:57:41] HOME_URL="https://www.centos.org/"
[2025-11-28 13:57:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:57:41] 
[2025-11-28 13:57:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:57:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:57:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:57:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:57:41] 
[2025-11-28 13:57:41] 2025-11-28 18:57:09,596 | INFO     | ***************************************
[2025-11-28 13:57:41] 2025-11-28 18:57:10,099 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 13:57:41] 2025-11-28 18:57:10,118 | INFO     | sufficient remaining disk space (117876719616 B)
[2025-11-28 13:57:41] 2025-11-28 18:57:10,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:57:41] 2025-11-28 18:57:10,119 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:57:41] 2025-11-28 18:57:10,119 | INFO     | update_server=False
[2025-11-28 13:57:41] 2025-11-28 18:57:10,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:57:41] 2025-11-28 18:57:10,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:57:41] 2025-11-28 18:57:10,218 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 13:57:41] 2025-11-28 18:57:10,218 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 13:57:41] 2025-11-28 18:57:10,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:57:41] 2025-11-28 18:57:10,219 | INFO     | will abort loop
[2025-11-28 13:57:41] 2025-11-28 18:57:10,299 | INFO     | all data control threads have been joined
[2025-11-28 13:57:41] 2025-11-28 18:57:10,531 | INFO     | all job control threads have been joined
[2025-11-28 13:57:41] 2025-11-28 18:57:10,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:57:41] 2025-11-28 18:57:11,125 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,177 | INFO     | all payload control threads have been joined
[2025-11-28 13:57:41] 2025-11-28 18:57:11,211 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,224 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,253 | INFO     | [job] validate thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,271 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,304 | INFO     | [data] control thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,335 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,373 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,536 | INFO     | [job] control thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:11,538 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:12,127 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:12,183 | INFO     | [payload] control thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:12,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:57:41] 2025-11-28 18:57:12,457 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:13,404 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:14,822 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:20,344 | INFO     | job.realtimelogging is not enabled
[2025-11-28 13:57:41] 2025-11-28 18:57:20,886 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:57:41] 2025-11-28 18:57:21,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:57:41] 2025-11-28 18:57:21,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139877141608256)>', '<ExcThread(monitor, started 139876640990976)>']
[2025-11-28 13:57:41] 2025-11-28 18:57:26,418 | INFO     | all workflow threads have been joined
[2025-11-28 13:57:41] 2025-11-28 18:57:26,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:57:41] 2025-11-28 18:57:26,419 | INFO     | traces error code: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:26,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:57:41] 2025-11-28 18:57:41,152 | INFO     | PID=3236442 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 13:57:41] 2025-11-28 18:57:41,152 | INFO     | .. there are 26 such processes running
[2025-11-28 13:57:41] 2025-11-28 18:57:41,153 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:57:41] 2025-11-28 18:57:41,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:57:41] 2025-11-28 18:57:41,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:57:41] 2025-11-28 18:57:41,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:57:41] 2025-11-28 18:57:41,153 | INFO     | [monitor] control thread has ended
[2025-11-28 13:57:41] 2025-11-28 18:57:41,385 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:57:41] 2025-11-28 18:57:41,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:57:41] 2025-11-28 18:57:41,397 [wrapper] pilotpid: 3236442
[2025-11-28 13:57:41] 2025-11-28 18:57:41,403 [wrapper] Pilot exit status: 0
[2025-11-28 13:57:41] 2025-11-28 18:57:41,450 [wrapper] pandaids: 6898214508 6898214508
[2025-11-28 13:57:41] 2025-11-28 18:57:41,544 [wrapper] cleanup supervisor_pilot  962088 3236443
[2025-11-28 13:57:41] 2025-11-28 18:57:41,552 [wrapper] Test setup, not cleaning
[2025-11-28 13:57:41] 2025-11-28 18:57:41,558 [wrapper] apfmon messages muted
[2025-11-28 13:57:41] 2025-11-28 18:57:41,562 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:57:41] 2025-11-28 18:57:41,566 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:57:41]  *** Error codes and diagnostics ***
[2025-11-28 13:57:41]     "exeErrorCode": 0,
[2025-11-28 13:57:41]     "exeErrorDiag": "",
[2025-11-28 13:57:41]     "pilotErrorCode": 0,
[2025-11-28 13:57:41]     "pilotErrorDiag": "",
[2025-11-28 13:57:41]  *** Listing of results directory ***
[2025-11-28 13:57:41] total 1705604
[2025-11-28 13:57:41] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 23:39 pilot3.tar.gz
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:39 queuedata.json
[2025-11-28 13:57:41] -rwx------. 1 boincer umatlas     36292 Nov 25 23:40 runpilot2-wrapper.sh
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas       100 Nov 27 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:57:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 19:57 run_atlas
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas       105 Nov 27 19:57 job.xml
[2025-11-28 13:57:41] -rw-r--r--. 3 boincer umatlas 408478777 Nov 27 19:57 EVNT.47483658._002502.pool.root.1
[2025-11-28 13:57:41] -rw-r--r--. 3 boincer umatlas 408478777 Nov 27 19:57 ATLAS.root_0
[2025-11-28 13:57:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 19:57 start_atlas.sh
[2025-11-28 13:57:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 19:57 shared
[2025-11-28 13:57:41] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 19:57 input.tar.gz
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas         0 Nov 27 19:57 boinc_lockfile
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 28 01:28 pandaJob.out
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas        57 Nov 28 01:28 setup.sh.local
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas    991866 Nov 28 01:29 agis_schedconf.cvmfs.json
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas       533 Nov 28 13:47 boinc_task_state.xml
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas 909639485 Nov 28 13:56 HITS.47556161._004847.pool.root.1
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 13:56 init_data.xml
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas      1060 Nov 28 13:56 memory_monitor_summary.json
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas   1516240 Nov 28 13:56 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas   1966519 Nov 28 13:56 log.47556161._004847.job.log.tgz.1
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas      8594 Nov 28 13:57 heartbeat.json
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas        29 Nov 28 13:57 wrapper_checkpoint.txt
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas       823 Nov 28 13:57 pilotlog.txt
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas        96 Nov 28 13:57 pilot_heartbeat.json
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas   6040960 Nov 28 13:57 log.47556161._004847.job.log.1
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas       353 Nov 28 13:57 output.list
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas       620 Nov 28 13:57 runtime_log
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas   8028160 Nov 28 13:57 result.tar.gz
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas      9423 Nov 28 13:57 runtime_log.err
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas       788 Nov 28 13:57 apeKDmxVMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTyMKDmS4CiVn.diag
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 13:57 boinc_mmap_file
[2025-11-28 13:57:41] -rw-r--r--. 1 boincer umatlas     23591 Nov 28 13:57 stderr.txt
[2025-11-28 13:57:41] HITS file was successfully produced:
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas 909639485 Nov 28 13:56 shared/HITS.pool.root.1
[2025-11-28 13:57:41]  *** Contents of shared directory: ***
[2025-11-28 13:57:41] total 1295672
[2025-11-28 13:57:41] -rw-r--r--. 3 boincer umatlas 408478777 Nov 27 19:57 ATLAS.root_0
[2025-11-28 13:57:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 19:57 start_atlas.sh
[2025-11-28 13:57:41] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 19:57 input.tar.gz
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas 909639485 Nov 28 13:56 HITS.pool.root.1
[2025-11-28 13:57:41] -rw-------. 1 boincer umatlas   8028160 Nov 28 13:57 result.tar.gz
13:58:03 (3210755): run_atlas exited; CPU time 216671.624565
13:58:03 (3210755): called boinc_finish(0)

</stderr_txt>
]]>

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