Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:01:13 (1732779): wrapper (7.7.26015): starting
20:01:13 (1732779): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 20:01:13] Arguments: --nthreads 8
[2025-11-27 20:01:13] Threads: 8
[2025-11-27 20:01:13] Checking for CVMFS
[2025-11-27 20:01:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:01:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:01:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:01:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:01:15] 2.13.3.0 9582 32221 283496 153391 1 932 35998906 40960001 63263 16776704 0 415919771 99.729 284152838 48429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 20:01:15] CVMFS is ok
[2025-11-27 20:01:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:01:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:01:15] Further information can be found at the LHC@home message board.
[2025-11-27 20:01:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:01:15] Checking for apptainer binary...
[2025-11-27 20:01:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:01:15] Running /usr/bin/apptainer --version
[2025-11-27 20:01:15] apptainer version 1.4.4-1.el9
[2025-11-27 20:01:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:01:16] c8-7-4.aglt2.org
[2025-11-27 20:01:16] apptainer works
[2025-11-27 20:01:16] Set ATHENA_PROC_NUMBER=8
[2025-11-27 20:01:16] Set ATHENA_CORE_NUMBER=8
[2025-11-27 20:01:16] Starting ATLAS job with PandaID=6897531567
[2025-11-27 20:01:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 09:49:41]  *** The last 200 lines of the pilot log: ***
[2025-11-28 09:49:41] 2025-11-28 14:48:49,975 | INFO     | time since job start (49567s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:48:51,960 | INFO     | monitor loop #2498: job 0:6897531567 is in state 'finished'
[2025-11-28 09:49:41] 2025-11-28 14:48:51,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:49:41] 2025-11-28 14:48:52,011 | INFO     | time since job start (49570s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:48:54,026 | INFO     | time since job start (49572s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:48:54,478 | INFO     | monitor loop #2499: job 0:6897531567 is in state 'finished'
[2025-11-28 09:49:41] 2025-11-28 14:48:54,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:49:41] 2025-11-28 14:48:56,046 | INFO     | time since job start (49574s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:48:56,996 | INFO     | monitor loop #2500: job 0:6897531567 is in state 'finished'
[2025-11-28 09:49:41] 2025-11-28 14:48:56,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:49:41] 2025-11-28 14:48:58,069 | INFO     | time since job start (49576s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:48:59,508 | INFO     | monitor loop #2501: job 0:6897531567 is in state 'finished'
[2025-11-28 09:49:41] 2025-11-28 14:48:59,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:49:41] 2025-11-28 14:49:00,085 | INFO     | time since job start (49578s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,012 | INFO     | monitor loop #2502: job 0:6897531567 is in state 'finished'
[2025-11-28 09:49:41] 2025-11-28 14:49:02,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,074 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 09:49:41] 2025-11-28 14:49:02,088 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9977812499988
[2025-11-28 09:49:41] 2025-11-28 14:49:02,093 | INFO     | time since job start (49580s) is within the limit (172800.0s)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,154 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897531567/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,155 | INFO     | extracted standard info from prmon json
[2025-11-28 09:49:41] 2025-11-28 14:49:02,155 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 09:49:41] 2025-11-28 14:49:02,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 09:49:41] 2025-11-28 14:49:02,175 | INFO     | fitting pss+swap vs Time
[2025-11-28 09:49:41] 2025-11-28 14:49:02,176 | INFO     | sum of square deviations: 164187868920.90945
[2025-11-28 09:49:41] 2025-11-28 14:49:02,216 | INFO     | sum of deviations: -211204366933.05646
[2025-11-28 09:49:41] 2025-11-28 14:49:02,216 | INFO     | mean x: 1764316599.9381952
[2025-11-28 09:49:41] 2025-11-28 14:49:02,216 | INFO     | mean y: 2779965.0988875153
[2025-11-28 09:49:41] 2025-11-28 14:49:02,216 | INFO     | intersect: 2272322611.6322227
[2025-11-28 09:49:41] 2025-11-28 14:49:02,217 | INFO     | chi2: 39.74714743852716
[2025-11-28 09:49:41] 2025-11-28 14:49:02,217 | INFO     | sum of square deviations: 161162969487.0119
[2025-11-28 09:49:41] 2025-11-28 14:49:02,264 | INFO     | sum of deviations: 41687424580.12816
[2025-11-28 09:49:41] 2025-11-28 14:49:02,264 | INFO     | mean x: 1764316447.4502487
[2025-11-28 09:49:41] 2025-11-28 14:49:02,264 | INFO     | mean y: 2792709.353233831
[2025-11-28 09:49:41] 2025-11-28 14:49:02,264 | INFO     | intersect: -453576449.59608215
[2025-11-28 09:49:41] 2025-11-28 14:49:02,265 | INFO     | chi2: 36.40041851977687
[2025-11-28 09:49:41] 2025-11-28 14:49:02,265 | INFO     | current chi2=36.40041851977687 (change=8.420048064899072 %)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,265 | INFO     | right removable region: 803
[2025-11-28 09:49:41] 2025-11-28 14:49:02,275 | INFO     | sum of square deviations: 161162013007.01193
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | sum of deviations: -543470083932.65497
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | mean x: 1764316752.4502487
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | mean y: 2796710.521144279
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | intersect: 5952420667.478095
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | chi2: 35.03237567638287
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | current chi2=35.03237567638287 (change=11.861912277946846 %)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,290 | INFO     | left removable region: 10
[2025-11-28 09:49:41] 2025-11-28 14:49:02,291 | INFO     | sum of square deviations: 154637584419.5914
[2025-11-28 09:49:41] 2025-11-28 14:49:02,319 | INFO     | sum of deviations: -538102566624.2749
[2025-11-28 09:49:41] 2025-11-28 14:49:02,319 | INFO     | mean x: 1764316721.9773014
[2025-11-28 09:49:41] 2025-11-28 14:49:02,319 | INFO     | mean y: 2827334.0958385877
[2025-11-28 09:49:41] 2025-11-28 14:49:02,319 | INFO     | intersect: 6142236197.713819
[2025-11-28 09:49:41] 2025-11-28 14:49:02,324 | INFO     | chi2: 27.441929130654604
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | current memory leak: -3.48 B/s (using 793 data points, chi2=27.44)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | could have reported an average CPU frequency of 3799 MHz (30 samples)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | ..............................
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | . Timing measurements:
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | . get job = 0 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,325 | INFO     | . initial setup = 6 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | . payload setup = 55 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | . stage-in = 0 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | . payload execution = 49376 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | . stage-out = 9 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | . log creation = 1 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,326 | INFO     | ..............................
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | 
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | job summary report
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | --------------------------------------------------
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | PanDA job id: 6897531567
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | task id: 47556173
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | errors: (none)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | pilot state: finished 
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | transexitcode: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:02,566 | INFO     | exeerrorcode: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | exeerrordiag: 
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | exitcode: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | exitmsg: OK
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | cpuconsumptiontime: 136357 s
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | nevents: 1000
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | neventsw: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | pid: 1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | pgrp: 1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | corecount: 8
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | event service: False
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | sizes: {0: 2283435, 1: 2284120, 2: 2284319, 13: 2284319, 23: 2284375, 34: 2284403, 40: 2284821, 45: 2284849, 49436: 2331498, 49437: 2331497, 49447: 2340547, 49450:
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | --------------------------------------------------
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | 
[2025-11-28 09:49:41] 2025-11-28 14:49:02,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 09:49:41] 2025-11-28 14:49:02,825 | INFO     | job 6897531567 has completed (purged errors)
[2025-11-28 09:49:41] 2025-11-28 14:49:02,825 | INFO     | overall cleanup function is called
[2025-11-28 09:49:41] 2025-11-28 14:49:03,891 | INFO     | --- collectZombieJob: --- 10, [1797167]
[2025-11-28 09:49:41] 2025-11-28 14:49:03,892 | INFO     | zombie collector waiting for pid 1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:03,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 09:49:41] 2025-11-28 14:49:03,892 | INFO     | collected zombie processes
[2025-11-28 09:49:41] 2025-11-28 14:49:03,892 | INFO     | will attempt to kill all subprocesses of pid=1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:07,127 | INFO     | process IDs to be killed: [1797167] (in reverse order)
[2025-11-28 09:49:41] 2025-11-28 14:49:08,072 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 09:49:41] 2025-11-28 14:49:08,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 09:49:41] 2025-11-28 14:49:08,246 | INFO     | did not find any defunct processes belonging to 1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:08,870 | INFO     | did not find any defunct processes belonging to 1797167
[2025-11-28 09:49:41] 2025-11-28 14:49:08,903 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 09:49:41] 2025-11-28 14:49:08,904 | INFO     | ready for new job
[2025-11-28 09:49:41] 2025-11-28 14:49:08,904 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 09:49:41] 2025-11-28 14:49:08,907 | INFO     | ***************************************
[2025-11-28 09:49:41] 2025-11-28 14:49:08,907 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 09:49:41] 2025-11-28 14:49:08,907 | INFO     | ***************************************
[2025-11-28 09:49:41] 2025-11-28 14:49:08,907 | INFO     | 
[2025-11-28 09:49:41] 2025-11-28 14:49:08,935 | INFO     | architecture information:
[2025-11-28 09:49:41] 2025-11-28 14:49:08,978 | INFO     | executing command: cat /etc/os-release
[2025-11-28 09:49:41] 2025-11-28 14:49:09,064 | INFO     | cat /etc/os-release:
[2025-11-28 09:49:41] NAME="CentOS Linux"
[2025-11-28 09:49:41] VERSION="7 (Core)"
[2025-11-28 09:49:41] ID="centos"
[2025-11-28 09:49:41] ID_LIKE="rhel fedora"
[2025-11-28 09:49:41] VERSION_ID="7"
[2025-11-28 09:49:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 09:49:41] ANSI_COLOR="0;31"
[2025-11-28 09:49:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 09:49:41] HOME_URL="https://www.centos.org/"
[2025-11-28 09:49:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 09:49:41] 
[2025-11-28 09:49:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 09:49:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 09:49:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 09:49:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 09:49:41] 
[2025-11-28 09:49:41] 2025-11-28 14:49:09,064 | INFO     | ***************************************
[2025-11-28 09:49:41] 2025-11-28 14:49:09,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | INFO     | sufficient remaining disk space (159122456576 B)
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | INFO     | update_server=False
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 09:49:41] 2025-11-28 14:49:09,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 09:49:41] 2025-11-28 14:49:09,711 | INFO     | all payload control threads have been joined
[2025-11-28 09:49:41] 2025-11-28 14:49:09,751 | INFO     | all data control threads have been joined
[2025-11-28 09:49:41] 2025-11-28 14:49:10,311 | INFO     | all job control threads have been joined
[2025-11-28 09:49:41] 2025-11-28 14:49:10,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:49:41] 2025-11-28 14:49:10,565 | INFO     | aborting loop
[2025-11-28 09:49:41] 2025-11-28 14:49:10,625 | INFO     | [job] retrieve thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:10,718 | INFO     | [payload] control thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:10,759 | INFO     | [data] control thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,013 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,014 | INFO     | [data] copytool_in thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,223 | INFO     | [payload] failed_post thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,333 | INFO     | [job] control thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,444 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,562 | INFO     | [payload] validate_post thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,573 | INFO     | [job] job monitor thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,627 | INFO     | [data] copytool_out thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:49:41] 2025-11-28 14:49:11,909 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,940 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:11,975 | INFO     | [job] validate thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:12,696 | INFO     | [job] queue monitor thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:12,788 | INFO     | [monitor] cgroup control has ended
[2025-11-28 09:49:41] 2025-11-28 14:49:13,630 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 09:49:41] 2025-11-28 14:49:15,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545088927552)>', '<ExcThread(monitor, started 140544567121664)>']
[2025-11-28 09:49:41] 2025-11-28 14:49:20,663 | INFO     | all workflow threads have been joined
[2025-11-28 09:49:41] 2025-11-28 14:49:20,664 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 09:49:41] 2025-11-28 14:49:20,664 | INFO     | traces error code: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:20,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | INFO     | PID=1750803 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | INFO     | .. there are 112 such processes running
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 09:49:41] 2025-11-28 14:49:38,680 | INFO     | [monitor] control thread has ended
[2025-11-28 09:49:41] 2025-11-28 14:49:39,580 [wrapper] ==== pilot stdout END ====
[2025-11-28 09:49:41] 2025-11-28 14:49:39,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 09:49:41] 2025-11-28 14:49:39,705 [wrapper] pilotpid: 1750803
[2025-11-28 09:49:41] 2025-11-28 14:49:39,739 [wrapper] Pilot exit status: 0
[2025-11-28 09:49:41] 2025-11-28 14:49:39,811 [wrapper] pandaids: 6897531567
[2025-11-28 09:49:41] 2025-11-28 14:49:40,358 [wrapper] cleanup supervisor_pilot  879350 1750804
[2025-11-28 09:49:41] 2025-11-28 14:49:40,369 [wrapper] Test setup, not cleaning
[2025-11-28 09:49:41] 2025-11-28 14:49:40,446 [wrapper] apfmon messages muted
[2025-11-28 09:49:41] 2025-11-28 14:49:40,458 [wrapper] ==== wrapper stdout END ====
[2025-11-28 09:49:41] 2025-11-28 14:49:40,582 [wrapper] ==== wrapper stderr END ====
[2025-11-28 09:49:41]  *** Error codes and diagnostics ***
[2025-11-28 09:49:41]     "exeErrorCode": 0,
[2025-11-28 09:49:41]     "exeErrorDiag": "",
[2025-11-28 09:49:41]     "pilotErrorCode": 0,
[2025-11-28 09:49:41]     "pilotErrorDiag": "",
[2025-11-28 09:49:41]  *** Listing of results directory ***
[2025-11-28 09:49:41] total 1299184
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 09:49:41] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas       100 Nov 27 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 09:49:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 20:01 run_atlas
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas       105 Nov 27 20:01 job.xml
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas 408645045 Nov 27 20:01 EVNT.47483658._003116.pool.root.1
[2025-11-28 09:49:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 20:01 shared
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 20:01 input.tar.gz
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 20:01 start_atlas.sh
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas         0 Nov 27 20:01 boinc_lockfile
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 20:01 pandaJob.out
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas        57 Nov 27 20:01 setup.sh.local
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas    991826 Nov 27 20:02 agis_schedconf.cvmfs.json
[2025-11-28 09:49:41] drwx------. 5 boincer umatlas      4096 Nov 27 20:02 pilot3
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas       533 Nov 28 09:04 boinc_task_state.xml
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas 902626575 Nov 28 09:46 HITS.47556173._000876.pool.root.1
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas      1051 Nov 28 09:48 memory_monitor_summary.json
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas   1516240 Nov 28 09:48 agis_ddmendpoints.agis.ALL.json
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas   1938259 Nov 28 09:48 log.47556173._000876.job.log.tgz.1
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas        95 Nov 28 09:48 pilot_heartbeat.json
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas      8593 Nov 28 09:49 heartbeat.json
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas      7174 Nov 28 09:49 init_data.xml
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas        29 Nov 28 09:49 wrapper_checkpoint.txt
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas       824 Nov 28 09:49 pilotlog.txt
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas   5648304 Nov 28 09:49 log.47556173._000876.job.log.1
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas       353 Nov 28 09:49 output.list
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas       620 Nov 28 09:49 runtime_log
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas   7608320 Nov 28 09:49 result.tar.gz
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas      9333 Nov 28 09:49 runtime_log.err
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas       658 Nov 28 09:49 9H8MDmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmveMKDm20yJqn.diag
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 09:49 boinc_mmap_file
[2025-11-28 09:49:41] -rw-r--r--. 1 boincer umatlas     21818 Nov 28 09:49 stderr.txt
[2025-11-28 09:49:41] HITS file was successfully produced:
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas 902626575 Nov 28 09:46 shared/HITS.pool.root.1
[2025-11-28 09:49:41]  *** Contents of shared directory: ***
[2025-11-28 09:49:41] total 1288576
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas 408645045 Nov 27 20:01 ATLAS.root_0
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 20:01 input.tar.gz
[2025-11-28 09:49:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 20:01 start_atlas.sh
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas 902626575 Nov 28 09:46 HITS.pool.root.1
[2025-11-28 09:49:41] -rw-------. 1 boincer umatlas   7608320 Nov 28 09:49 result.tar.gz
09:49:43 (1732779): run_atlas exited; CPU time 137404.276762
09:49:43 (1732779): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN