Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:48:49 (3782709): wrapper (7.7.26015): starting
18:48:49 (3782709): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 18:48:49] Arguments: --nthreads 8
[2025-11-27 18:48:49] Threads: 8
[2025-11-27 18:48:49] Checking for CVMFS
[2025-11-27 18:48:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 18:48:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 18:48:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 18:48:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 18:48:51] 2.13.3.0 16090 32122 433264 153390 3 733 29417392 32935936 68036 16776704 0 461678391 99.633 414248791 52070 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 18:48:51] CVMFS is ok
[2025-11-27 18:48:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 18:48:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 18:48:52] Further information can be found at the LHC@home message board.
[2025-11-27 18:48:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:48:52] Checking for apptainer binary...
[2025-11-27 18:48:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 18:48:52] Running /usr/bin/apptainer --version
[2025-11-27 18:48:52] apptainer version 1.4.4-1.el9
[2025-11-27 18:48:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:48:52] c7-9-15.aglt2.org
[2025-11-27 18:48:52] apptainer works
[2025-11-27 18:48:53] Set ATHENA_PROC_NUMBER=8
[2025-11-27 18:48:53] Set ATHENA_CORE_NUMBER=8
[2025-11-27 18:48:53] Starting ATLAS job with PandaID=6892547884
[2025-11-27 18:48:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:20:08 (3782709): BOINC client no longer exists - exiting
06:20:08 (3782709): timer handler: client dead, exiting
06:21:27 (964796): wrapper (7.7.26015): starting
06:21:27 (964796): wrapper: running run_atlas (--nthreads 11)
[2025-11-28 06:21:27] Arguments: --nthreads 11
[2025-11-28 06:21:27] Threads: 11
[2025-11-28 06:21:27] This job has been restarted, cleaning up previous attempt
[2025-11-28 06:21:27] Checking for CVMFS
[2025-11-28 06:21:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 06:21:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 06:21:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 06:21:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 06:21:28] 2.13.3.0 16090 32815 412932 153408 2 355 24007021 32935937 54098 16776704 0 471281656 99.637 417045108 52016 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-28 06:21:28] CVMFS is ok
[2025-11-28 06:21:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 06:21:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 06:21:28] Further information can be found at the LHC@home message board.
[2025-11-28 06:21:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 06:21:28] Checking for apptainer binary...
[2025-11-28 06:21:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 06:21:28] Running /usr/bin/apptainer --version
[2025-11-28 06:21:28] apptainer version 1.4.4-1.el9
[2025-11-28 06:21:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 06:21:28] c7-9-15.aglt2.org
[2025-11-28 06:21:28] apptainer works
[2025-11-28 06:21:28] Set ATHENA_PROC_NUMBER=11
[2025-11-28 06:21:28] Set ATHENA_CORE_NUMBER=11
[2025-11-28 06:21:28] Starting ATLAS job with PandaID=6892547884
[2025-11-28 06:21:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 14:05:58]  *** The last 200 lines of the pilot log: ***
[2025-11-28 14:05:58] 2025-11-28 19:05:20,029 | INFO     | chi2: 16.53793050204109
[2025-11-28 14:05:58] 2025-11-28 19:05:20,029 | INFO     | sum of square deviations: 28067919389.959972
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | sum of deviations: 80414970906.51685
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | mean x: 1764342617.2004454
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | mean y: 3269676.416481069
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | intersect: -5051595925.13048
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | chi2: 12.275751313628497
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | current chi2=12.275751313628497 (change=25.772143545327875 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,179 | INFO     | sum of square deviations: 27140928900.477493
[2025-11-28 14:05:58] 2025-11-28 19:05:20,226 | INFO     | sum of deviations: 258942220001.72046
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | mean x: 1764342464.7252252
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | mean y: 3299039.292792793
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | intersect: -16829682482.250463
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | chi2: 8.542009593316346
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | current chi2=8.542009593316346 (change=30.415586182223848 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,227 | INFO     | sum of square deviations: 26234589960.437283
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | sum of deviations: 448062056881.0321
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | mean x: 1764342312.2505696
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | mean y: 3330860.8724373574
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | intersect: -30129972028.99098
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | chi2: 4.608898852036598
[2025-11-28 14:05:58] 2025-11-28 19:05:20,260 | INFO     | current chi2=4.608898852036598 (change=46.04432596700888 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,261 | INFO     | sum of square deviations: 25348670007.32022
[2025-11-28 14:05:58] 2025-11-28 19:05:20,283 | INFO     | sum of deviations: 582693706860.3942
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | mean x: 1764342159.7764976
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | mean y: 3353975.50921659
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | intersect: -40553845788.94997
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | chi2: 2.3079478572374255
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | current chi2=2.3079478572374255 (change=49.92409399009525 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,284 | INFO     | sum of square deviations: 24482698234.871784
[2025-11-28 14:05:58] 2025-11-28 19:05:20,304 | INFO     | sum of deviations: 579103348906.3079
[2025-11-28 14:05:58] 2025-11-28 19:05:20,304 | INFO     | mean x: 1764342007.2820513
[2025-11-28 14:05:58] 2025-11-28 19:05:20,304 | INFO     | mean y: 3353330.104895105
[2025-11-28 14:05:58] 2025-11-28 19:05:20,304 | INFO     | intersect: -41729643385.82935
[2025-11-28 14:05:58] 2025-11-28 19:05:20,304 | INFO     | chi2: 2.2725458634058957
[2025-11-28 14:05:58] 2025-11-28 19:05:20,305 | INFO     | current chi2=2.2725458634058957 (change=1.533916536307945 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,305 | INFO     | right removable region: 428
[2025-11-28 14:05:58] 2025-11-28 19:05:20,305 | INFO     | sum of square deviations: 28067454334.908592
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | sum of deviations: -234996281294.05304
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | mean x: 1764342922.1893096
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | mean y: 3260021.9888641424
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | intersect: 14775316678.594833
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | chi2: 14.59748287262493
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | current chi2=14.59748287262493 (change=11.73331590174884 %)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,328 | INFO     | left removable region: 10
[2025-11-28 14:05:58] 2025-11-28 19:05:20,329 | INFO     | sum of square deviations: 22646978266.519413
[2025-11-28 14:05:58] 2025-11-28 19:05:20,331 | INFO     | sum of deviations: 408909144595.1795
[2025-11-28 14:05:58] 2025-11-28 19:05:20,331 | INFO     | mean x: 1764342281.8014355
[2025-11-28 14:05:58] 2025-11-28 19:05:20,331 | INFO     | mean y: 3383304.700956938
[2025-11-28 14:05:58] 2025-11-28 19:05:20,350 | INFO     | time since job start (27814s) is within the limit (172800.0s)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,331 | INFO     | intersect: -31853215166.588684
[2025-11-28 14:05:58] 2025-11-28 19:05:20,351 | INFO     | chi2: 0.10673569351601805
[2025-11-28 14:05:58] 2025-11-28 19:05:20,351 | INFO     | current memory leak: 18.06 B/s (using 418 data points, chi2=0.11)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | could have reported an average CPU frequency of 3791 MHz (18 samples)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | ..............................
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . Timing measurements:
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . get job = 0 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . initial setup = 1 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . payload setup = 12 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . stage-in = 0 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . payload execution = 27704 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . stage-out = 10 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | . log creation = 1 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,352 | INFO     | ..............................
[2025-11-28 14:05:58] 2025-11-28 19:05:20,773 | INFO     | 
[2025-11-28 14:05:58] 2025-11-28 19:05:20,773 | INFO     | job summary report
[2025-11-28 14:05:58] 2025-11-28 19:05:20,773 | INFO     | --------------------------------------------------
[2025-11-28 14:05:58] 2025-11-28 19:05:20,773 | INFO     | PanDA job id: 6892547884
[2025-11-28 14:05:58] 2025-11-28 19:05:20,773 | INFO     | task id: 47493029
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | errors: (none)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | pilot state: finished 
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | transexitcode: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | exeerrorcode: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | exeerrordiag: 
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | exitcode: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | exitmsg: OK
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | cpuconsumptiontime: 137625 s
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | nevents: 1000
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | neventsw: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | pid: 1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | pgrp: 1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | corecount: 11
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | event service: False
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | sizes: {0: 2284305, 9: 2284567, 11: 2284595, 27720: 2322110, 27721: 2322109, 27733: 2331161, 27735: 2331345, 27795: 2331591}
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | --------------------------------------------------
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | 
[2025-11-28 14:05:58] 2025-11-28 19:05:20,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | job 6892547884 has completed (purged errors)
[2025-11-28 14:05:58] 2025-11-28 19:05:20,943 | INFO     | overall cleanup function is called
[2025-11-28 14:05:58] 2025-11-28 19:05:21,996 | INFO     | --- collectZombieJob: --- 10, [1032170]
[2025-11-28 14:05:58] 2025-11-28 19:05:21,996 | INFO     | zombie collector waiting for pid 1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:21,996 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 14:05:58] 2025-11-28 19:05:21,997 | INFO     | collected zombie processes
[2025-11-28 14:05:58] 2025-11-28 19:05:21,997 | INFO     | will attempt to kill all subprocesses of pid=1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:25,632 | INFO     | process IDs to be killed: [1032170] (in reverse order)
[2025-11-28 14:05:58] 2025-11-28 19:05:26,079 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 14:05:58] 2025-11-28 19:05:26,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 14:05:58] 2025-11-28 19:05:26,271 | INFO     | did not find any defunct processes belonging to 1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:26,369 | INFO     | did not find any defunct processes belonging to 1032170
[2025-11-28 14:05:58] 2025-11-28 19:05:26,431 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 14:05:58] 2025-11-28 19:05:26,432 | INFO     | ready for new job
[2025-11-28 14:05:58] 2025-11-28 19:05:26,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 14:05:58] 2025-11-28 19:05:26,484 | INFO     | ***************************************
[2025-11-28 14:05:58] 2025-11-28 19:05:26,484 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 14:05:58] 2025-11-28 19:05:26,484 | INFO     | ***************************************
[2025-11-28 14:05:58] 2025-11-28 19:05:26,484 | INFO     | 
[2025-11-28 14:05:58] 2025-11-28 19:05:26,558 | INFO     | architecture information:
[2025-11-28 14:05:58] 2025-11-28 19:05:26,585 | INFO     | executing command: cat /etc/os-release
[2025-11-28 14:05:58] 2025-11-28 19:05:26,892 | INFO     | cat /etc/os-release:
[2025-11-28 14:05:58] NAME="CentOS Linux"
[2025-11-28 14:05:58] VERSION="7 (Core)"
[2025-11-28 14:05:58] ID="centos"
[2025-11-28 14:05:58] ID_LIKE="rhel fedora"
[2025-11-28 14:05:58] VERSION_ID="7"
[2025-11-28 14:05:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 14:05:58] ANSI_COLOR="0;31"
[2025-11-28 14:05:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 14:05:58] HOME_URL="https://www.centos.org/"
[2025-11-28 14:05:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 14:05:58] 
[2025-11-28 14:05:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 14:05:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 14:05:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 14:05:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 14:05:58] 
[2025-11-28 14:05:58] 2025-11-28 19:05:26,892 | INFO     | ***************************************
[2025-11-28 14:05:58] 2025-11-28 19:05:27,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-28 14:05:58] 2025-11-28 19:05:27,512 | INFO     | sufficient remaining disk space (66569895936 B)
[2025-11-28 14:05:58] 2025-11-28 19:05:27,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 14:05:58] 2025-11-28 19:05:27,513 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 14:05:58] 2025-11-28 19:05:27,513 | INFO     | update_server=False
[2025-11-28 14:05:58] 2025-11-28 19:05:27,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 14:05:58] 2025-11-28 19:05:27,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 14:05:58] 2025-11-28 19:05:27,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:05:58] 2025-11-28 19:05:27,518 | INFO     | aborting loop
[2025-11-28 14:05:58] 2025-11-28 19:05:28,421 | INFO     | all data control threads have been joined
[2025-11-28 14:05:58] 2025-11-28 19:05:28,519 | INFO     | [job] retrieve thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:28,523 | INFO     | [job] job monitor thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:28,632 | INFO     | all payload control threads have been joined
[2025-11-28 14:05:58] 2025-11-28 19:05:28,742 | INFO     | all job control threads have been joined
[2025-11-28 14:05:58] 2025-11-28 19:05:28,815 | INFO     | [job] validate thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:28,816 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:28,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,427 | INFO     | [data] control thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,520 | INFO     | [data] copytool_out thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,662 | INFO     | [payload] control thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,770 | INFO     | [job] control thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,796 | INFO     | [payload] failed_post thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,808 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,809 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,809 | INFO     | [data] copytool_in thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:29,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:05:58] 2025-11-28 19:05:29,861 | INFO     | [payload] validate_post thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:30,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 14:05:58] 2025-11-28 19:05:30,868 | INFO     | [job] queue monitor thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:34,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 14:05:58] 2025-11-28 19:05:37,059 | INFO     | [monitor] cgroup control has ended
[2025-11-28 14:05:58] 2025-11-28 19:05:38,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396421084992)>', '<ExcThread(monitor, started 140396055205632)>']
[2025-11-28 14:05:58] 2025-11-28 19:05:43,329 | INFO     | all workflow threads have been joined
[2025-11-28 14:05:58] 2025-11-28 19:05:43,354 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 14:05:58] 2025-11-28 19:05:43,355 | INFO     | traces error code: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:43,355 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | INFO     | PID=992506 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | INFO     | .. there are 97 such processes running
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 14:05:58] 2025-11-28 19:05:55,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 14:05:58] 2025-11-28 19:05:55,393 | INFO     | [monitor] control thread has ended
[2025-11-28 14:05:58] 2025-11-28 19:05:55,563 [wrapper] ==== pilot stdout END ====
[2025-11-28 14:05:58] 2025-11-28 19:05:55,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 14:05:58] 2025-11-28 19:05:55,646 [wrapper] pilotpid: 992506
[2025-11-28 14:05:58] 2025-11-28 19:05:55,664 [wrapper] Pilot exit status: 0
[2025-11-28 14:05:58] 2025-11-28 19:05:55,830 [wrapper] pandaids: 6892547884 6892547884
[2025-11-28 14:05:58] 2025-11-28 19:05:56,530 [wrapper] cleanup supervisor_pilot  891720 992507
[2025-11-28 14:05:58] 2025-11-28 19:05:56,632 [wrapper] Test setup, not cleaning
[2025-11-28 14:05:58] 2025-11-28 19:05:56,672 [wrapper] apfmon messages muted
[2025-11-28 14:05:58] 2025-11-28 19:05:56,716 [wrapper] ==== wrapper stdout END ====
[2025-11-28 14:05:58] 2025-11-28 19:05:56,772 [wrapper] ==== wrapper stderr END ====
[2025-11-28 14:05:58]  *** Error codes and diagnostics ***
[2025-11-28 14:05:58]     "exeErrorCode": 0,
[2025-11-28 14:05:58]     "exeErrorDiag": "",
[2025-11-28 14:05:58]     "pilotErrorCode": 0,
[2025-11-28 14:05:58]     "pilotErrorDiag": "",
[2025-11-28 14:05:58]  *** Listing of results directory ***
[2025-11-28 14:05:58] total 1708884
[2025-11-28 14:05:58] drwx------. 7 boincer umatlas      4096 Nov  5 04:49 pilot3
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:33 queuedata.json
[2025-11-28 14:05:58] -rwx------. 1 boincer umatlas     36292 Nov 19 03:35 runpilot2-wrapper.sh
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas       100 Nov 27 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 14:05:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 18:48 run_atlas
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas       105 Nov 27 18:48 job.xml
[2025-11-28 14:05:58] -rw-r--r--. 3 boincer umatlas 410107200 Nov 27 18:48 EVNT.47493027._000319.pool.root.1
[2025-11-28 14:05:58] -rw-r--r--. 3 boincer umatlas 410107200 Nov 27 18:48 ATLAS.root_0
[2025-11-28 14:05:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 18:48 start_atlas.sh
[2025-11-28 14:05:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 18:48 shared
[2025-11-28 14:05:58] -rw-r--r--. 2 boincer umatlas    611268 Nov 27 18:48 input.tar.gz
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas         0 Nov 27 18:48 boinc_lockfile
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas      2773 Nov 28 06:21 pandaJob.out
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas    991856 Nov 28 06:21 agis_schedconf.cvmfs.json
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas       533 Nov 28 13:41 boinc_task_state.xml
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas      7172 Nov 28 14:00 init_data.xml
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas 915186930 Nov 28 14:02 HITS.47493029._003142.pool.root.1
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas      1053 Nov 28 14:04 memory_monitor_summary.json
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas   1516240 Nov 28 14:04 agis_ddmendpoints.agis.ALL.json
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas   2010982 Nov 28 14:04 log.47493029._003142.job.log.tgz.1
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas        95 Nov 28 14:05 pilot_heartbeat.json
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas      8588 Nov 28 14:05 heartbeat.json
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas       822 Nov 28 14:05 pilotlog.txt
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas   3258009 Nov 28 14:05 log.47493029._003142.job.log.1
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 14:05 boinc_mmap_file
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas        29 Nov 28 14:05 wrapper_checkpoint.txt
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas       353 Nov 28 14:05 output.list
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas       620 Nov 28 14:05 runtime_log
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas   5283840 Nov 28 14:05 result.tar.gz
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas      8800 Nov 28 14:05 runtime_log.err
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas       783 Nov 28 14:05 lCZLDm3psf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm6FKDmbIQBxm.diag
[2025-11-28 14:05:58] -rw-r--r--. 1 boincer umatlas     23461 Nov 28 14:05 stderr.txt
[2025-11-28 14:05:58] HITS file was successfully produced:
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas 915186930 Nov 28 14:02 shared/HITS.pool.root.1
[2025-11-28 14:05:58]  *** Contents of shared directory: ***
[2025-11-28 14:05:58] total 1300020
[2025-11-28 14:05:58] -rw-r--r--. 3 boincer umatlas 410107200 Nov 27 18:48 ATLAS.root_0
[2025-11-28 14:05:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 18:48 start_atlas.sh
[2025-11-28 14:05:58] -rw-r--r--. 2 boincer umatlas    611268 Nov 27 18:48 input.tar.gz
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas 915186930 Nov 28 14:02 HITS.pool.root.1
[2025-11-28 14:05:58] -rw-------. 1 boincer umatlas   5283840 Nov 28 14:05 result.tar.gz
14:06:00 (964796): run_atlas exited; CPU time 137811.596930
14:06:00 (964796): called boinc_finish(0)

</stderr_txt>
]]>

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