Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
15:54:21 (2676608): wrapper (7.7.26015): starting
15:54:21 (2676608): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 23:38:34] Arguments: --nthreads 4
[2025-11-27 23:38:34] Threads: 4
[2025-11-27 23:38:34] Checking for CVMFS
[2025-11-27 23:38:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:38:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:38:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:38:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:38:34] 2.13.2.0 213864 6136 61144 153387 0 90 3545690 4096000 5957 130560 0 18178910 99.958 686539 762 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 23:38:34] CVMFS is ok
[2025-11-27 23:38:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 23:38:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 23:38:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 23:38:34] Further information can be found at the LHC@home message board.
[2025-11-27 23:38:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:38:34] Checking for apptainer binary...
[2025-11-27 23:38:34] apptainer is not installed, using version from CVMFS
[2025-11-27 23:38:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:38:34] X670EPG
[2025-11-27 23:38:34] apptainer works
[2025-11-27 23:38:34] Set ATHENA_PROC_NUMBER=4
[2025-11-27 23:38:34] Set ATHENA_CORE_NUMBER=4
[2025-11-27 23:38:34] Starting ATLAS job with PandaID=6895386994
[2025-11-27 23:38:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:38:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:38:34] 2025-11-28 06:37:59,336 | INFO     | monitor loop #2079: job 0:6895386994 is in state 'finished'
[2025-11-27 23:38:34] 2025-11-28 06:37:59,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:38:34] 2025-11-28 06:37:59,883 | INFO     | time since job start (27810s) is within the limit (172800.0s)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,452 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:38:34] 2025-11-28 06:38:00,455 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4470.272687499999
[2025-11-27 23:38:34] 2025-11-28 06:38:00,458 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6895386994/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,458 | INFO     | extracted standard info from prmon json
[2025-11-27 23:38:34] 2025-11-28 06:38:00,458 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:38:34] 2025-11-28 06:38:00,458 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:38:34] 2025-11-28 06:38:00,461 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:38:34] 2025-11-28 06:38:00,462 | INFO     | sum of square deviations: 29401593130.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,464 | INFO     | sum of deviations: 173916666625.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,464 | INFO     | mean x: 1764297966.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,464 | INFO     | mean y: 2242767.6513157897
[2025-11-27 23:38:34] 2025-11-28 06:38:00,464 | INFO     | intersect: -10433954342.863153
[2025-11-27 23:38:34] 2025-11-28 06:38:00,464 | INFO     | chi2: 3.4319980115172593
[2025-11-27 23:38:34] 2025-11-28 06:38:00,465 | INFO     | sum of square deviations: 28444998450.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | sum of deviations: 252354684440.00003
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | mean x: 1764297814.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | mean y: 2255238.7073170734
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | intersect: -15650015542.49049
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | chi2: 1.7216310546793387
[2025-11-27 23:38:34] 2025-11-28 06:38:00,467 | INFO     | current chi2=1.7216310546793387 (change=49.83589591538781 %)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,468 | INFO     | sum of square deviations: 27509380907.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | sum of deviations: 247602919554.99997
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | mean x: 1764297661.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | mean y: 2254464.1345291478
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | intersect: -15877610423.423159
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | chi2: 1.7204692834917386
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | current chi2=1.7204692834917386 (change=0.06748084523931733 %)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,470 | INFO     | right removable region: 445
[2025-11-27 23:38:34] 2025-11-28 06:38:00,471 | INFO     | sum of square deviations: 28444998450.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | sum of deviations: 99209936156.00005
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | mean x: 1764298119.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | mean y: 2254627.8425720623
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | intersect: -6151231513.273423
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | chi2: 1.7801386127121446
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | current chi2=1.7801386127121446 (change=48.13112925070841 %)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,473 | INFO     | sum of square deviations: 27509380907.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | sum of deviations: 86484380377.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | mean x: 1764298271.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | mean y: 2256700.5
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | intersect: -5544369133.241394
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | chi2: 1.7639991995383704
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | current chi2=1.7639991995383704 (change=0.9066380032723899 %)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | left removable region: 20
[2025-11-27 23:38:34] 2025-11-28 06:38:00,476 | INFO     | sum of square deviations: 23803609100.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,478 | INFO     | sum of deviations: 138816323169.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,478 | INFO     | mean x: 1764298241.0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,478 | INFO     | mean y: 2272567.489411765
[2025-11-27 23:38:34] 2025-11-28 06:38:00,478 | INFO     | intersect: -10286645964.161077
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | chi2: 0.025987643687184717
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | current memory leak: 5.83 B/s (using 425 data points, chi2=0.03)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | could have reported an average CPU frequency of 4580 MHz (19 samples)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | ..............................
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . Timing measurements:
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . get job = 0 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . initial setup = 2 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . payload setup = 3 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . stage-in = 0 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . payload execution = 27783 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . stage-out = 2 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | . log creation = 0 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,479 | INFO     | ..............................
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | 
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | job summary report
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | --------------------------------------------------
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | PanDA job id: 6895386994
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | task id: 47556149
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | errors: (none)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | pilot state: finished 
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | transexitcode: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | exeerrorcode: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | exeerrordiag: 
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | exitcode: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | exitmsg: OK
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | cpuconsumptiontime: 108685 s
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | nevents: 1000
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | neventsw: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | pid: 2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | pgrp: 2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | corecount: 4
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | event service: False
[2025-11-27 23:38:34] 2025-11-28 06:38:00,522 | INFO     | sizes: {0: 2284151, 1: 2284350, 3: 2284612, 11: 2284640, 27790: 2322659, 27793: 2331851, 27798: 2332041}
[2025-11-27 23:38:34] 2025-11-28 06:38:00,523 | INFO     | --------------------------------------------------
[2025-11-27 23:38:34] 2025-11-28 06:38:00,523 | INFO     | 
[2025-11-27 23:38:34] 2025-11-28 06:38:00,523 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-11-27 23:38:34] 2025-11-28 06:38:00,534 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,534 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | job 6895386994 has completed (purged errors)
[2025-11-27 23:38:34] 2025-11-28 06:38:00,535 | INFO     | overall cleanup function is called
[2025-11-27 23:38:34] 2025-11-28 06:38:01,544 | INFO     | --- collectZombieJob: --- 10, [2687115]
[2025-11-27 23:38:34] 2025-11-28 06:38:01,544 | INFO     | zombie collector waiting for pid 2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:01,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:38:34] 2025-11-28 06:38:01,544 | INFO     | collected zombie processes
[2025-11-27 23:38:34] 2025-11-28 06:38:01,544 | INFO     | will attempt to kill all subprocesses of pid=2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:01,634 | INFO     | process IDs to be killed: [2687115] (in reverse order)
[2025-11-27 23:38:34] 2025-11-28 06:38:01,680 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:38:34] 2025-11-28 06:38:01,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:38:34] 2025-11-28 06:38:01,684 | INFO     | did not find any defunct processes belonging to 2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:01,686 | INFO     | did not find any defunct processes belonging to 2687115
[2025-11-27 23:38:34] 2025-11-28 06:38:01,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:38:34] 2025-11-28 06:38:01,687 | INFO     | ready for new job
[2025-11-27 23:38:34] 2025-11-28 06:38:01,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:38:34] 2025-11-28 06:38:01,689 | INFO     | ***************************************
[2025-11-27 23:38:34] 2025-11-28 06:38:01,689 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:38:34] 2025-11-28 06:38:01,689 | INFO     | ***************************************
[2025-11-27 23:38:34] 2025-11-28 06:38:01,689 | INFO     | 
[2025-11-27 23:38:34] 2025-11-28 06:38:01,690 | INFO     | architecture information:
[2025-11-27 23:38:34] 2025-11-28 06:38:01,690 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:38:34] 2025-11-28 06:38:01,700 | INFO     | cat /etc/os-release:
[2025-11-27 23:38:34] NAME="CentOS Linux"
[2025-11-27 23:38:34] VERSION="7 (Core)"
[2025-11-27 23:38:34] ID="centos"
[2025-11-27 23:38:34] ID_LIKE="rhel fedora"
[2025-11-27 23:38:34] VERSION_ID="7"
[2025-11-27 23:38:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:38:34] ANSI_COLOR="0;31"
[2025-11-27 23:38:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:38:34] HOME_URL="https://www.centos.org/"
[2025-11-27 23:38:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:38:34] 
[2025-11-27 23:38:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:38:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:38:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:38:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:38:34] 
[2025-11-27 23:38:34] 2025-11-28 06:38:01,701 | INFO     | ***************************************
[2025-11-27 23:38:34] 2025-11-28 06:38:02,205 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | INFO     | sufficient remaining disk space (424949055488 B)
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | INFO     | update_server=False
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:38:34] 2025-11-28 06:38:02,216 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:38:34] 2025-11-28 06:38:02,326 | INFO     | all job control threads have been joined
[2025-11-27 23:38:34] 2025-11-28 06:38:02,433 | INFO     | all data control threads have been joined
[2025-11-27 23:38:34] 2025-11-28 06:38:02,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:38:34] 2025-11-28 06:38:02,843 | INFO     | aborting loop
[2025-11-27 23:38:34] 2025-11-28 06:38:02,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:38:34] 2025-11-28 06:38:03,220 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,221 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,327 | INFO     | [job] control thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,408 | INFO     | all payload control threads have been joined
[2025-11-27 23:38:34] 2025-11-28 06:38:03,411 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,436 | INFO     | [data] control thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,552 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,794 | INFO     | [job] validate thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,848 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:03,903 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,047 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,302 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,412 | INFO     | [payload] control thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,601 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:04,884 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:05,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:38:34] 2025-11-28 06:38:09,428 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:38:34] 2025-11-28 06:38:15,020 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:38:34] 2025-11-28 06:38:16,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128439831312192)>', '<ExcThread(monitor, started 128439250061056)>']
[2025-11-27 23:38:34] 2025-11-28 06:38:21,191 | INFO     | all workflow threads have been joined
[2025-11-27 23:38:34] 2025-11-28 06:38:21,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:38:34] 2025-11-28 06:38:21,192 | INFO     | traces error code: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:21,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | INFO     | PID=2680451 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | INFO     | .. there are 8 such processes running
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:38:34] 2025-11-28 06:38:33,069 | INFO     | [monitor] control thread has ended
[2025-11-27 23:38:34] 2025-11-28 06:38:33,128 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:38:34] 2025-11-28 06:38:33,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:38:34] 2025-11-28 06:38:33,131 [wrapper] pilotpid: 2680451
[2025-11-27 23:38:34] 2025-11-28 06:38:33,133 [wrapper] Pilot exit status: 0
[2025-11-27 23:38:34] 2025-11-28 06:38:33,138 [wrapper] pandaids: 6895386994
[2025-11-27 23:38:34] 2025-11-28 06:38:33,163 [wrapper] cleanup supervisor_pilot 3158279 2680452
[2025-11-27 23:38:34] 2025-11-28 06:38:33,165 [wrapper] Test setup, not cleaning
[2025-11-27 23:38:34] 2025-11-28 06:38:33,166 [wrapper] apfmon messages muted
[2025-11-27 23:38:34] 2025-11-28 06:38:33,168 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:38:34] 2025-11-28 06:38:33,169 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:38:34]  *** Error codes and diagnostics ***
[2025-11-27 23:38:34]     "exeErrorCode": 0,
[2025-11-27 23:38:34]     "exeErrorDiag": "",
[2025-11-27 23:38:34]     "pilotErrorCode": 0,
[2025-11-27 23:38:34]     "pilotErrorDiag": "",
[2025-11-27 23:38:34]  *** Listing of results directory ***
[2025-11-27 23:38:34] total 1323096
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc    576529 Nov 23 23:20 pilot3.tar.gz
[2025-11-27 23:38:34] -rwx------ 1 boinc boinc     36292 Nov 23 23:26 runpilot2-wrapper.sh
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc      5112 Nov 23 23:26 queuedata.json
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:38:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:54 run_atlas
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:54 job.xml
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc 409456063 Nov 27 15:54 EVNT.47483658._001258.pool.root.1
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:54 start_atlas.sh
[2025-11-27 23:38:34] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:54 shared
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc    590104 Nov 27 15:54 input.tar.gz
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc      9986 Nov 27 15:54 init_data.xml
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc       112 Nov 27 15:54 stderr.txt
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:54 boinc_lockfile
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc      2786 Nov 27 15:54 pandaJob.out
[2025-11-27 23:38:34] -rw------- 1 boinc boinc    991532 Nov 27 15:54 agis_schedconf.cvmfs.json
[2025-11-27 23:38:34] drwx------ 5 boinc boinc      4096 Nov 27 15:54 pilot3
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc       533 Nov 27 23:33 boinc_task_state.xml
[2025-11-27 23:38:34] -rw------- 1 boinc boinc 930912042 Nov 27 23:37 HITS.47556149._002445.pool.root.1
[2025-11-27 23:38:34] -rw------- 1 boinc boinc      1031 Nov 27 23:37 memory_monitor_summary.json
[2025-11-27 23:38:34] -rw------- 1 boinc boinc   1516240 Nov 27 23:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:38:34] -rw------- 1 boinc boinc   1282257 Nov 27 23:37 log.47556149._002445.job.log.tgz.1
[2025-11-27 23:38:34] -rw------- 1 boinc boinc      8558 Nov 27 23:38 heartbeat.json
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc      8192 Nov 27 23:38 boinc_mmap_file
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc        29 Nov 27 23:38 wrapper_checkpoint.txt
[2025-11-27 23:38:34] -rw------- 1 boinc boinc        95 Nov 27 23:38 pilot_heartbeat.json
[2025-11-27 23:38:34] -rw------- 1 boinc boinc       822 Nov 27 23:38 pilotlog.txt
[2025-11-27 23:38:34] -rw------- 1 boinc boinc   4007923 Nov 27 23:38 log.47556149._002445.job.log.1
[2025-11-27 23:38:34] -rw------- 1 boinc boinc       353 Nov 27 23:38 output.list
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc       620 Nov 27 23:38 runtime_log
[2025-11-27 23:38:34] -rw------- 1 boinc boinc   5314560 Nov 27 23:38 result.tar.gz
[2025-11-27 23:38:34] -rw-r--r-- 1 boinc boinc      8920 Nov 27 23:38 runtime_log.err
[2025-11-27 23:38:34] -rw------- 1 boinc boinc       661 Nov 27 23:38 GcAMDmuCfh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHxIKDmYtX3Im.diag
[2025-11-27 23:38:34] HITS file was successfully produced:
[2025-11-27 23:38:34] -rw------- 1 boinc boinc 930912042 Nov 27 23:37 shared/HITS.pool.root.1
[2025-11-27 23:38:34]  *** Contents of shared directory: ***
[2025-11-27 23:38:34] total 1314748
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc 409456063 Nov 27 15:54 ATLAS.root_0
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:54 start_atlas.sh
[2025-11-27 23:38:34] -rw-r--r-- 2 boinc boinc    590104 Nov 27 15:54 input.tar.gz
[2025-11-27 23:38:34] -rw------- 1 boinc boinc 930912042 Nov 27 23:37 HITS.pool.root.1
[2025-11-27 23:38:34] -rw------- 1 boinc boinc   5314560 Nov 27 23:38 result.tar.gz
23:38:35 (2676608): run_atlas exited; CPU time 108686.780722
23:38:35 (2676608): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN