Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:45:00 (6668): wrapper (7.7.26015): starting
22:45:00 (6668): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 22:45:00] Arguments: --nthreads 8
[2025-11-29 22:45:00] Threads: 8
[2025-11-29 22:45:00] Checking for CVMFS
[2025-11-29 22:45:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 22:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 22:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 22:45:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 22:45:03] 2.11.2.0 11529 227408 140116 153456 1 85 15591393 25165825 2504 130560 9 94743390 99.893 42570801 2473 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 22:45:03] CVMFS is ok
[2025-11-29 22:45:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 22:45:03] Checking for apptainer binary...
[2025-11-29 22:45:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 22:45:03] Running /usr/bin/apptainer --version
[2025-11-29 22:45:03] apptainer version 1.3.2-1.el7
[2025-11-29 22:45:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 22:45:29] cg-vwn354.simple-grid.lan
[2025-11-29 22:45:29] apptainer works
[2025-11-29 22:45:29] Set ATHENA_PROC_NUMBER=8
[2025-11-29 22:45:29] Set ATHENA_CORE_NUMBER=8
[2025-11-29 22:45:29] Starting ATLAS job with PandaID=6897759716
[2025-11-29 22:45:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 22:15:49]  *** The last 200 lines of the pilot log: ***
[2025-11-30 22:15:49] 2025-11-30 21:14:25,245 | INFO     | time since job start (84312s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:26,542 | INFO     | PID=10463 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 22:15:49] 2025-11-30 21:14:26,542 | INFO     | .. there are 9 such processes running
[2025-11-30 22:15:49] 2025-11-30 21:14:27,028 | INFO     | monitor loop #5667: job 0:6897759716 is in state 'finished'
[2025-11-30 22:15:49] 2025-11-30 21:14:27,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:15:49] 2025-11-30 21:14:27,547 | INFO     | time since job start (84314s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:29,545 | INFO     | monitor loop #5668: job 0:6897759716 is in state 'finished'
[2025-11-30 22:15:49] 2025-11-30 21:14:29,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:15:49] 2025-11-30 21:14:29,554 | INFO     | time since job start (84316s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:31,561 | INFO     | time since job start (84318s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:32,050 | INFO     | monitor loop #5669: job 0:6897759716 is in state 'finished'
[2025-11-30 22:15:49] 2025-11-30 21:14:32,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:15:49] 2025-11-30 21:14:33,567 | INFO     | time since job start (84320s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:34,558 | INFO     | monitor loop #5670: job 0:6897759716 is in state 'finished'
[2025-11-30 22:15:49] 2025-11-30 21:14:34,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:15:49] 2025-11-30 21:14:35,574 | INFO     | time since job start (84322s) is within the limit (172800.0s)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,605 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 22:15:49] 2025-11-30 21:14:36,607 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 22:15:49] 2025-11-30 21:14:36,609 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6897759716/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,610 | INFO     | extracted standard info from prmon json
[2025-11-30 22:15:49] 2025-11-30 21:14:36,610 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 22:15:49] 2025-11-30 21:14:36,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 22:15:49] 2025-11-30 21:14:36,653 | INFO     | fitting pss+swap vs Time
[2025-11-30 22:15:49] 2025-11-30 21:14:36,656 | INFO     | sum of square deviations: 802582961908.9222
[2025-11-30 22:15:49] 2025-11-30 21:14:36,718 | INFO     | sum of deviations: 3341337980652.189
[2025-11-30 22:15:49] 2025-11-30 21:14:36,718 | INFO     | mean x: 1764495303.0975964
[2025-11-30 22:15:49] 2025-11-30 21:14:36,719 | INFO     | mean y: 2825604.3940276764
[2025-11-30 22:15:49] 2025-11-30 21:14:36,719 | INFO     | intersect: -7343175311.074512
[2025-11-30 22:15:49] 2025-11-30 21:14:36,721 | INFO     | chi2: 25.149893777925215
[2025-11-30 22:15:49] 2025-11-30 21:14:36,723 | INFO     | sum of square deviations: 793847108897.8672
[2025-11-30 22:15:49] 2025-11-30 21:14:36,786 | INFO     | sum of deviations: 3783549003715.0884
[2025-11-30 22:15:49] 2025-11-30 21:14:36,786 | INFO     | mean x: 1764495150.6016083
[2025-11-30 22:15:49] 2025-11-30 21:14:36,786 | INFO     | mean y: 2833322.783625731
[2025-11-30 22:15:49] 2025-11-30 21:14:36,786 | INFO     | intersect: -8406914340.576235
[2025-11-30 22:15:49] 2025-11-30 21:14:36,788 | INFO     | chi2: 22.063916524831203
[2025-11-30 22:15:49] 2025-11-30 21:14:36,788 | INFO     | current chi2=22.063916524831203 (change=12.2703391129336 %)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,788 | INFO     | right removable region: 1367
[2025-11-30 22:15:49] 2025-11-30 21:14:36,790 | INFO     | sum of square deviations: 793846189627.8667
[2025-11-30 22:15:49] 2025-11-30 21:14:36,845 | INFO     | sum of deviations: 2760403278732.066
[2025-11-30 22:15:49] 2025-11-30 21:14:36,846 | INFO     | mean x: 1764495455.6016083
[2025-11-30 22:15:49] 2025-11-30 21:14:36,846 | INFO     | mean y: 2835744.423976608
[2025-11-30 22:15:49] 2025-11-30 21:14:36,846 | INFO     | intersect: -6132759670.140863
[2025-11-30 22:15:49] 2025-11-30 21:14:36,848 | INFO     | chi2: 20.258901599467638
[2025-11-30 22:15:49] 2025-11-30 21:14:36,848 | INFO     | current chi2=20.258901599467638 (change=19.447367140574332 %)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,848 | INFO     | left removable region: 10
[2025-11-30 22:15:49] 2025-11-30 21:14:36,850 | INFO     | sum of square deviations: 774850040717.419
[2025-11-30 22:15:49] 2025-11-30 21:14:36,907 | INFO     | sum of deviations: 2791188873410.6455
[2025-11-30 22:15:49] 2025-11-30 21:14:36,907 | INFO     | mean x: 1764495425.110538
[2025-11-30 22:15:49] 2025-11-30 21:14:36,908 | INFO     | mean y: 2854368.975681651
[2025-11-30 22:15:49] 2025-11-30 21:14:36,908 | INFO     | intersect: -6353265833.576698
[2025-11-30 22:15:49] 2025-11-30 21:14:36,909 | INFO     | chi2: 12.670669334668219
[2025-11-30 22:15:49] 2025-11-30 21:14:36,910 | INFO     | current memory leak: 3.60 B/s (using 1357 data points, chi2=12.67)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | ..............................
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . Timing measurements:
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . get job = 0 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . initial setup = 6 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . payload setup = 150 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . stage-in = 0 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . payload execution = 83875 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,911 | INFO     | . stage-out = 5 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,912 | INFO     | . log creation = 2 s
[2025-11-30 22:15:49] 2025-11-30 21:14:36,912 | INFO     | ..............................
[2025-11-30 22:15:49] 2025-11-30 21:14:37,025 | INFO     | 
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | job summary report
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | --------------------------------------------------
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | PanDA job id: 6897759716
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | task id: 47556161
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | errors: (none)
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | pilot state: finished 
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | transexitcode: 0
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | exeerrorcode: 0
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | exeerrordiag: 
[2025-11-30 22:15:49] 2025-11-30 21:14:37,026 | INFO     | exitcode: 0
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | exitmsg: OK
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | cpuconsumptiontime: 314747 s
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | nevents: 1000
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | neventsw: 0
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | pid: 17134
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | pgrp: 17134
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | corecount: 8
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | event service: False
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | sizes: {0: 2283431, 1: 2284116, 2: 2284315, 13: 2284315, 23: 2284371, 34: 2284399, 45: 2284555, 56: 2284583, 66: 2284611, 77: 2284639, 88: 2284695, 99: 2285003, 10
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | --------------------------------------------------
[2025-11-30 22:15:49] 2025-11-30 21:14:37,027 | INFO     | 
[2025-11-30 22:15:49] 2025-11-30 21:14:37,028 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-30 22:15:49] 2025-11-30 21:14:37,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,339 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | job 6897759716 has completed (purged errors)
[2025-11-30 22:15:49] 2025-11-30 21:14:37,341 | INFO     | overall cleanup function is called
[2025-11-30 22:15:49] 2025-11-30 21:14:38,358 | INFO     | --- collectZombieJob: --- 10, [17134]
[2025-11-30 22:15:49] 2025-11-30 21:14:38,359 | INFO     | zombie collector waiting for pid 17134
[2025-11-30 22:15:49] 2025-11-30 21:14:38,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 22:15:49] 2025-11-30 21:14:38,359 | INFO     | collected zombie processes
[2025-11-30 22:15:49] 2025-11-30 21:14:38,359 | INFO     | will attempt to kill all subprocesses of pid=17134
[2025-11-30 22:15:49] 2025-11-30 21:14:38,455 | INFO     | process IDs to be killed: [17134] (in reverse order)
[2025-11-30 22:15:49] 2025-11-30 21:14:38,808 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 22:15:49] 2025-11-30 21:14:38,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 22:15:49] 2025-11-30 21:14:38,811 | INFO     | did not find any defunct processes belonging to 17134
[2025-11-30 22:15:49] 2025-11-30 21:14:38,814 | INFO     | did not find any defunct processes belonging to 17134
[2025-11-30 22:15:49] 2025-11-30 21:14:38,862 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 22:15:49] 2025-11-30 21:14:38,863 | INFO     | ready for new job
[2025-11-30 22:15:49] 2025-11-30 21:14:38,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 22:15:49] 2025-11-30 21:14:38,868 | INFO     | ***************************************
[2025-11-30 22:15:49] 2025-11-30 21:14:38,868 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 22:15:49] 2025-11-30 21:14:38,868 | INFO     | ***************************************
[2025-11-30 22:15:49] 2025-11-30 21:14:38,868 | INFO     | 
[2025-11-30 22:15:49] 2025-11-30 21:14:38,869 | INFO     | pilot is running in a VM
[2025-11-30 22:15:49] 2025-11-30 21:14:38,869 | INFO     | architecture information:
[2025-11-30 22:15:49] 2025-11-30 21:14:38,878 | INFO     | executing command: cat /etc/os-release
[2025-11-30 22:15:49] 2025-11-30 21:14:39,170 | INFO     | cat /etc/os-release:
[2025-11-30 22:15:49] NAME="CentOS Linux"
[2025-11-30 22:15:49] VERSION="7 (Core)"
[2025-11-30 22:15:49] ID="centos"
[2025-11-30 22:15:49] ID_LIKE="rhel fedora"
[2025-11-30 22:15:49] VERSION_ID="7"
[2025-11-30 22:15:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 22:15:49] ANSI_COLOR="0;31"
[2025-11-30 22:15:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 22:15:49] HOME_URL="https://www.centos.org/"
[2025-11-30 22:15:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 22:15:49] 
[2025-11-30 22:15:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 22:15:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 22:15:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 22:15:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 22:15:49] 
[2025-11-30 22:15:49] 2025-11-30 21:14:39,170 | INFO     | ***************************************
[2025-11-30 22:15:49] 2025-11-30 21:14:39,672 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-30 22:15:49] 2025-11-30 21:14:39,942 | INFO     | sufficient remaining disk space (487766097920 B)
[2025-11-30 22:15:49] 2025-11-30 21:14:39,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 22:15:49] 2025-11-30 21:14:39,942 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 22:15:49] 2025-11-30 21:14:39,942 | INFO     | update_server=False
[2025-11-30 22:15:49] 2025-11-30 21:14:39,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 22:15:49] 2025-11-30 21:14:39,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 22:15:49] 2025-11-30 21:14:39,985 | INFO     | all job control threads have been joined
[2025-11-30 22:15:49] 2025-11-30 21:14:40,314 | INFO     | all payload control threads have been joined
[2025-11-30 22:15:49] 2025-11-30 21:14:40,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 22:15:49] 2025-11-30 21:14:40,578 | INFO     | aborting loop
[2025-11-30 22:15:49] 2025-11-30 21:14:40,755 | INFO     | all data control threads have been joined
[2025-11-30 22:15:49] 2025-11-30 21:14:40,948 | INFO     | [job] retrieve thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:40,991 | INFO     | [job] control thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,025 | INFO     | [payload] failed_post thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,052 | INFO     | [data] copytool_in thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,100 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,320 | INFO     | [payload] control thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,577 | INFO     | [payload] validate_post thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,583 | INFO     | [job] job monitor thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,617 | INFO     | [job] validate thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,761 | INFO     | [data] control thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:41,949 | INFO     | [data] copytool_out thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:42,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 22:15:49] 2025-11-30 21:14:42,254 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:42,255 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:43,045 | INFO     | [job] queue monitor thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:14:43,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 22:15:49] 2025-11-30 21:14:47,199 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 22:15:49] 2025-11-30 21:15:08,764 | INFO     | PID=10463 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 22:15:49] 2025-11-30 21:15:08,764 | INFO     | .. there are 9 such processes running
[2025-11-30 22:15:49] 2025-11-30 21:15:08,764 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 22:15:49] 2025-11-30 21:15:08,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 22:15:49] 2025-11-30 21:15:08,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 22:15:49] 2025-11-30 21:15:39,355 | INFO     | [monitor] cgroup control has ended
[2025-11-30 22:15:49] 2025-11-30 21:15:40,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802661496640)>', '<ExcThread(monitor, started 139802343085824)>']
[2025-11-30 22:15:49] 2025-11-30 21:15:40,959 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 22:15:49] 2025-11-30 21:15:40,960 | INFO     | [monitor] control thread has ended
[2025-11-30 22:15:49] 2025-11-30 21:15:45,347 | INFO     | all workflow threads have been joined
[2025-11-30 22:15:49] 2025-11-30 21:15:45,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 22:15:49] 2025-11-30 21:15:45,348 | INFO     | traces error code: 0
[2025-11-30 22:15:49] 2025-11-30 21:15:45,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 22:15:49] 2025-11-30 21:15:45,710 [wrapper] ==== pilot stdout END ====
[2025-11-30 22:15:49] 2025-11-30 21:15:45,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 22:15:49] 2025-11-30 21:15:45,832 [wrapper] pilotpid: 10463
[2025-11-30 22:15:49] 2025-11-30 21:15:45,877 [wrapper] Pilot exit status: 0
[2025-11-30 22:15:49] 2025-11-30 21:15:46,262 [wrapper] pandaids: 6897759716
[2025-11-30 22:15:49] 2025-11-30 21:15:46,812 [wrapper] cleanup supervisor_pilot 20487 10464
[2025-11-30 22:15:49] 2025-11-30 21:15:46,934 [wrapper] Test setup, not cleaning
[2025-11-30 22:15:49] 2025-11-30 21:15:47,043 [wrapper] apfmon messages muted
[2025-11-30 22:15:49] 2025-11-30 21:15:47,118 [wrapper] ==== wrapper stdout END ====
[2025-11-30 22:15:49] 2025-11-30 21:15:47,190 [wrapper] ==== wrapper stderr END ====
[2025-11-30 22:15:49]  *** Error codes and diagnostics ***
[2025-11-30 22:15:49]     "exeErrorCode": 0,
[2025-11-30 22:15:49]     "exeErrorDiag": "",
[2025-11-30 22:15:49]     "pilotErrorCode": 0,
[2025-11-30 22:15:49]     "pilotErrorDiag": "",
[2025-11-30 22:15:49]  *** Listing of results directory ***
[2025-11-30 22:15:49] total 1328248
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-30 22:15:49] -rwx------. 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc       100 Nov 29 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 22:15:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 22:45 run_atlas
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc       105 Nov 29 22:45 job.xml
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc      6393 Nov 29 22:45 init_data.xml
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc 409997636 Nov 29 22:45 EVNT.47483658._002323.pool.root.1
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc     15847 Nov 29 22:45 start_atlas.sh
[2025-11-30 22:15:49] drwxrwx--x. 2 boinc boinc        68 Nov 29 22:45 shared
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc    590109 Nov 29 22:45 input.tar.gz
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc         0 Nov 29 22:45 boinc_lockfile
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc      2783 Nov 29 22:45 pandaJob.out
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc    991826 Nov 29 22:49 agis_schedconf.cvmfs.json
[2025-11-30 22:15:49] drwx------. 5 boinc boinc      4096 Nov 29 22:49 pilot3
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc       533 Nov 30 21:50 boinc_task_state.xml
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc 918758765 Nov 30 22:11 HITS.47556161._003051.pool.root.1
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc      1028 Nov 30 22:12 memory_monitor_summary.json
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc   1516240 Nov 30 22:13 agis_ddmendpoints.agis.ALL.json
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc   2461245 Nov 30 22:13 log.47556161._003051.job.log.tgz.1
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc        95 Nov 30 22:14 pilot_heartbeat.json
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc      8622 Nov 30 22:14 heartbeat.json
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc      4884 Nov 30 22:15 pilotlog.txt
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc      8192 Nov 30 22:15 boinc_mmap_file
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc  11272123 Nov 30 22:15 log.47556161._003051.job.log.1
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc        29 Nov 30 22:15 wrapper_checkpoint.txt
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc       353 Nov 30 22:15 output.list
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc       620 Nov 30 22:15 runtime_log
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc  13752320 Nov 30 22:15 result.tar.gz
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc      8817 Nov 30 22:15 runtime_log.err
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc       662 Nov 30 22:15 9ddMDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEdJKDm9ojQzn.diag
[2025-11-30 22:15:49] -rw-r--r--. 1 boinc boinc     21499 Nov 30 22:15 stderr.txt
[2025-11-30 22:15:49] HITS file was successfully produced:
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc 918758765 Nov 30 22:11 shared/HITS.pool.root.1
[2025-11-30 22:15:49]  *** Contents of shared directory: ***
[2025-11-30 22:15:49] total 1311648
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc 409997636 Nov 29 22:45 ATLAS.root_0
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc     15847 Nov 29 22:45 start_atlas.sh
[2025-11-30 22:15:49] -rw-r--r--. 2 boinc boinc    590109 Nov 29 22:45 input.tar.gz
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc 918758765 Nov 30 22:11 HITS.pool.root.1
[2025-11-30 22:15:49] -rw-------. 1 boinc boinc  13752320 Nov 30 22:15 result.tar.gz
22:15:50 (6668): run_atlas exited; CPU time 315360.764550
22:15:50 (6668): called boinc_finish(0)

</stderr_txt>
]]>

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