Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:10:06 (1963645): wrapper (7.7.26015): starting
19:10:06 (1963645): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 19:10:06] Arguments: --nthreads 8
[2025-11-27 19:10:06] Threads: 8
[2025-11-27 19:10:06] Checking for CVMFS
[2025-11-27 19:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 19:10:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 19:10:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 19:10:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 19:10:07] 2.13.2.0 14352 36509 240592 153390 2 678 39016125 40960001 29240 16776704 0 288451260 99.682 230136504 48400 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 19:10:07] CVMFS is ok
[2025-11-27 19:10:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 19:10:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 19:10:07] Further information can be found at the LHC@home message board.
[2025-11-27 19:10:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 19:10:07] Checking for apptainer binary...
[2025-11-27 19:10:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 19:10:07] Running /usr/bin/apptainer --version
[2025-11-27 19:10:07] apptainer version 1.4.4-1.el9
[2025-11-27 19:10:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 19:10:09] c-208-36.aglt2.org
[2025-11-27 19:10:09] apptainer works
[2025-11-27 19:10:09] Set ATHENA_PROC_NUMBER=8
[2025-11-27 19:10:09] Set ATHENA_CORE_NUMBER=8
[2025-11-27 19:10:09] Starting ATLAS job with PandaID=6898215345
[2025-11-27 19:10:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:45:41]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:46:02] 2025-11-28 13:44:33,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:46:02] 2025-11-28 13:44:34,174 | INFO     | time since job start (48807s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:36,183 | INFO     | time since job start (48809s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:36,372 | INFO     | monitor loop #2956: job 0:6898215345 is in state 'finished'
[2025-11-28 08:46:02] 2025-11-28 13:44:36,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:46:02] 2025-11-28 13:44:38,190 | INFO     | time since job start (48811s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:38,885 | INFO     | monitor loop #2957: job 0:6898215345 is in state 'finished'
[2025-11-28 08:46:02] 2025-11-28 13:44:38,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:46:02] 2025-11-28 13:44:40,197 | INFO     | time since job start (48813s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:41,399 | INFO     | monitor loop #2958: job 0:6898215345 is in state 'finished'
[2025-11-28 08:46:02] 2025-11-28 13:44:41,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:46:02] 2025-11-28 13:44:42,556 | INFO     | PID=1968890 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:46:02] 2025-11-28 13:44:42,556 | INFO     | .. there are 37 such processes running
[2025-11-28 08:46:02] 2025-11-28 13:44:43,557 | INFO     | time since job start (48816s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:43,906 | INFO     | monitor loop #2959: job 0:6898215345 is in state 'finished'
[2025-11-28 08:46:02] 2025-11-28 13:44:43,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,583 | INFO     | time since job start (48818s) is within the limit (172800.0s)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,774 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 08:46:02] 2025-11-28 13:44:45,793 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3750.3374375000008
[2025-11-28 08:46:02] 2025-11-28 13:44:45,851 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898215345/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,852 | INFO     | extracted standard info from prmon json
[2025-11-28 08:46:02] 2025-11-28 13:44:45,852 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:46:02] 2025-11-28 13:44:45,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:46:02] 2025-11-28 13:44:45,867 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:46:02] 2025-11-28 13:44:45,868 | INFO     | sum of square deviations: 157580833039.99493
[2025-11-28 08:46:02] 2025-11-28 13:44:45,885 | INFO     | sum of deviations: 133593547453.11368
[2025-11-28 08:46:02] 2025-11-28 13:44:45,885 | INFO     | mean x: 1764313124.2832081
[2025-11-28 08:46:02] 2025-11-28 13:44:45,885 | INFO     | mean y: 2743702.127819549
[2025-11-28 08:46:02] 2025-11-28 13:44:45,885 | INFO     | intersect: -1493001970.3884425
[2025-11-28 08:46:02] 2025-11-28 13:44:45,890 | INFO     | chi2: 33.15354817015815
[2025-11-28 08:46:02] 2025-11-28 13:44:45,891 | INFO     | sum of square deviations: 154637853711.49573
[2025-11-28 08:46:02] 2025-11-28 13:44:45,906 | INFO     | sum of deviations: 383727612793.2462
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | mean x: 1764312971.7944515
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | mean y: 2756658.5107187894
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | intersect: -4375315001.420201
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | chi2: 29.70253141497654
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | current chi2=29.70253141497654 (change=10.409192818426318 %)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,907 | INFO     | right removable region: 792
[2025-11-28 08:46:02] 2025-11-28 13:44:45,908 | INFO     | sum of square deviations: 154636985681.4958
[2025-11-28 08:46:02] 2025-11-28 13:44:45,923 | INFO     | sum of deviations: -186240728718.05252
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | mean x: 1764313276.7944515
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | mean y: 2760269.5334174023
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | intersect: 2127652894.0826375
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | chi2: 28.647209702528308
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | current chi2=28.647209702528308 (change=13.59232636127329 %)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,924 | INFO     | left removable region: 10
[2025-11-28 08:46:02] 2025-11-28 13:44:45,925 | INFO     | sum of square deviations: 148291068812.0768
[2025-11-28 08:46:02] 2025-11-28 13:44:45,940 | INFO     | sum of deviations: -151633015266.77335
[2025-11-28 08:46:02] 2025-11-28 13:44:45,941 | INFO     | mean x: 1764313246.319693
[2025-11-28 08:46:02] 2025-11-28 13:44:45,941 | INFO     | mean y: 2790619.6150895143
[2025-11-28 08:46:02] 2025-11-28 13:44:45,941 | INFO     | intersect: 1806865130.3571484
[2025-11-28 08:46:02] 2025-11-28 13:44:45,941 | INFO     | chi2: 21.247333069017046
[2025-11-28 08:46:02] 2025-11-28 13:44:45,941 | INFO     | current memory leak: -1.02 B/s (using 782 data points, chi2=21.25)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | could have reported an average CPU frequency of 3772 MHz (30 samples)
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | ..............................
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . Timing measurements:
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . get job = 0 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . initial setup = 8 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . payload setup = 52 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . stage-in = 0 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . payload execution = 48649 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . stage-out = 7 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | . log creation = 2 s
[2025-11-28 08:46:02] 2025-11-28 13:44:45,942 | INFO     | ..............................
[2025-11-28 08:46:02] 2025-11-28 13:44:46,097 | INFO     | 
[2025-11-28 08:46:02] 2025-11-28 13:44:46,099 | INFO     | job summary report
[2025-11-28 08:46:02] 2025-11-28 13:44:46,099 | INFO     | --------------------------------------------------
[2025-11-28 08:46:02] 2025-11-28 13:44:46,099 | INFO     | PanDA job id: 6898215345
[2025-11-28 08:46:02] 2025-11-28 13:44:46,099 | INFO     | task id: 47556161
[2025-11-28 08:46:02] 2025-11-28 13:44:46,099 | INFO     | errors: (none)
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | pilot state: finished 
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | transexitcode: 0
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | exeerrorcode: 0
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | exeerrordiag: 
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | exitcode: 0
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | exitmsg: OK
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | cpuconsumptiontime: 145186 s
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | nevents: 1000
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | neventsw: 0
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | pid: 1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | pgrp: 1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | corecount: 8
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | event service: False
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | sizes: {0: 2284264, 11: 2284264, 22: 2284292, 27: 2284582, 33: 2284610, 48706: 2331738, 48707: 2331865, 48715: 2340971, 48754: 2341161}
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | --------------------------------------------------
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | 
[2025-11-28 08:46:02] 2025-11-28 13:44:46,100 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-28 08:46:02] 2025-11-28 13:44:46,292 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,292 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,292 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | job 6898215345 has completed (purged errors)
[2025-11-28 08:46:02] 2025-11-28 13:44:46,293 | INFO     | overall cleanup function is called
[2025-11-28 08:46:02] 2025-11-28 13:44:47,372 | INFO     | --- collectZombieJob: --- 10, [1990355]
[2025-11-28 08:46:02] 2025-11-28 13:44:47,372 | INFO     | zombie collector waiting for pid 1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:47,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:46:02] 2025-11-28 13:44:47,372 | INFO     | collected zombie processes
[2025-11-28 08:46:02] 2025-11-28 13:44:47,372 | INFO     | will attempt to kill all subprocesses of pid=1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:48,559 | INFO     | process IDs to be killed: [1990355] (in reverse order)
[2025-11-28 08:46:02] 2025-11-28 13:44:49,011 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:46:02] 2025-11-28 13:44:49,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:46:02] 2025-11-28 13:44:49,035 | INFO     | did not find any defunct processes belonging to 1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:49,058 | INFO     | did not find any defunct processes belonging to 1990355
[2025-11-28 08:46:02] 2025-11-28 13:44:49,070 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:46:02] 2025-11-28 13:44:49,070 | INFO     | ready for new job
[2025-11-28 08:46:02] 2025-11-28 13:44:49,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:46:02] 2025-11-28 13:44:49,073 | INFO     | ***************************************
[2025-11-28 08:46:02] 2025-11-28 13:44:49,074 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:46:02] 2025-11-28 13:44:49,078 | INFO     | ***************************************
[2025-11-28 08:46:02] 2025-11-28 13:44:49,078 | INFO     | 
[2025-11-28 08:46:02] 2025-11-28 13:44:49,085 | INFO     | architecture information:
[2025-11-28 08:46:02] 2025-11-28 13:44:49,094 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:46:02] 2025-11-28 13:44:49,128 | INFO     | cat /etc/os-release:
[2025-11-28 08:46:02] NAME="CentOS Linux"
[2025-11-28 08:46:02] VERSION="7 (Core)"
[2025-11-28 08:46:02] ID="centos"
[2025-11-28 08:46:02] ID_LIKE="rhel fedora"
[2025-11-28 08:46:02] VERSION_ID="7"
[2025-11-28 08:46:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:46:02] ANSI_COLOR="0;31"
[2025-11-28 08:46:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:46:02] HOME_URL="https://www.centos.org/"
[2025-11-28 08:46:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:46:02] 
[2025-11-28 08:46:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:46:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:46:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:46:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:46:02] 
[2025-11-28 08:46:02] 2025-11-28 13:44:49,128 | INFO     | ***************************************
[2025-11-28 08:46:02] 2025-11-28 13:44:49,632 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-28 08:46:02] 2025-11-28 13:44:49,677 | INFO     | sufficient remaining disk space (150685614080 B)
[2025-11-28 08:46:02] 2025-11-28 13:44:49,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:46:02] 2025-11-28 13:44:49,678 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:46:02] 2025-11-28 13:44:49,678 | INFO     | update_server=False
[2025-11-28 08:46:02] 2025-11-28 13:44:49,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:46:02] 2025-11-28 13:44:49,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:46:02] 2025-11-28 13:44:49,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:46:02] 2025-11-28 13:44:49,954 | INFO     | aborting loop
[2025-11-28 08:46:02] 2025-11-28 13:44:50,055 | INFO     | all job control threads have been joined
[2025-11-28 08:46:02] 2025-11-28 13:44:50,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:46:02] 2025-11-28 13:44:50,439 | INFO     | all data control threads have been joined
[2025-11-28 08:46:02] 2025-11-28 13:44:50,479 | INFO     | all payload control threads have been joined
[2025-11-28 08:46:02] 2025-11-28 13:44:50,684 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:50,712 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:50,955 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:50,979 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,061 | INFO     | [job] control thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,095 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:46:02] 2025-11-28 13:44:51,400 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,445 | INFO     | [data] control thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,485 | INFO     | [payload] control thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,699 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,699 | INFO     | [job] validate thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,893 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:51,950 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:52,138 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:52,184 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:44:53,688 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:46:02] 2025-11-28 13:45:20,956 | INFO     | PID=1968890 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:46:02] 2025-11-28 13:45:20,956 | INFO     | .. there are 37 such processes running
[2025-11-28 08:46:02] 2025-11-28 13:45:20,956 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:46:02] 2025-11-28 13:45:20,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:46:02] 2025-11-28 13:45:20,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:46:02] 2025-11-28 13:45:32,599 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:46:02] 2025-11-28 13:45:33,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542240798528)>', '<ExcThread(monitor, started 140541882767104)>']
[2025-11-28 08:46:02] 2025-11-28 13:45:34,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:46:02] 2025-11-28 13:45:34,067 | INFO     | [monitor] control thread has ended
[2025-11-28 08:46:02] 2025-11-28 13:45:38,367 | INFO     | all workflow threads have been joined
[2025-11-28 08:46:02] 2025-11-28 13:45:38,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:46:02] 2025-11-28 13:45:38,367 | INFO     | traces error code: 0
[2025-11-28 08:46:02] 2025-11-28 13:45:38,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:46:02] 2025-11-28 13:45:39,693 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:46:02] 2025-11-28 13:45:39,741 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:46:02] 2025-11-28 13:45:39,879 [wrapper] pilotpid: 1968890
[2025-11-28 08:46:02] 2025-11-28 13:45:39,894 [wrapper] Pilot exit status: 0
[2025-11-28 08:46:02] 2025-11-28 13:45:40,343 [wrapper] pandaids: 6898215345
[2025-11-28 08:46:02] 2025-11-28 13:45:40,697 [wrapper] cleanup supervisor_pilot 1277934 1968891
[2025-11-28 08:46:02] 2025-11-28 13:45:40,710 [wrapper] Test setup, not cleaning
[2025-11-28 08:46:02] 2025-11-28 13:45:40,749 [wrapper] apfmon messages muted
[2025-11-28 08:46:02] 2025-11-28 13:45:40,786 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:46:02] 2025-11-28 13:45:40,818 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:46:02]  *** Error codes and diagnostics ***
[2025-11-28 08:46:02]     "exeErrorCode": 0,
[2025-11-28 08:46:02]     "exeErrorDiag": "",
[2025-11-28 08:46:02]     "pilotErrorCode": 0,
[2025-11-28 08:46:02]     "pilotErrorDiag": "",
[2025-11-28 08:46:02]  *** Listing of results directory ***
[2025-11-28 08:46:02] total 1325220
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 23:39 pilot3.tar.gz
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:47 queuedata.json
[2025-11-28 08:46:02] -rwx------. 1 boincer umatlas     36292 Nov 25 23:50 runpilot2-wrapper.sh
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas       100 Nov 27 19:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:46:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 19:10 run_atlas
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas       105 Nov 27 19:10 job.xml
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas 409691093 Nov 27 19:10 EVNT.47483658._002509.pool.root.1
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 19:10 start_atlas.sh
[2025-11-28 08:46:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 19:10 shared
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 19:10 input.tar.gz
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas         0 Nov 27 19:10 boinc_lockfile
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 19:10 pandaJob.out
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas        57 Nov 27 19:10 setup.sh.local
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas    991532 Nov 27 19:11 agis_schedconf.cvmfs.json
[2025-11-28 08:46:02] drwx------. 5 boincer umatlas      4096 Nov 27 19:11 pilot3
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas       533 Nov 28 08:08 boinc_task_state.xml
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas      7173 Nov 28 08:39 init_data.xml
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas 927066923 Nov 28 08:42 HITS.47556161._004920.pool.root.1
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas      1067 Nov 28 08:43 memory_monitor_summary.json
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas   1516240 Nov 28 08:44 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas   1976540 Nov 28 08:44 log.47556161._004920.job.log.tgz.1
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas        95 Nov 28 08:44 pilot_heartbeat.json
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas      8616 Nov 28 08:44 heartbeat.json
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas      4825 Nov 28 08:45 pilotlog.txt
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas   6194989 Nov 28 08:45 log.47556161._004920.job.log.1
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas       353 Nov 28 08:45 output.list
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas       620 Nov 28 08:45 runtime_log
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas   8192000 Nov 28 08:45 result.tar.gz
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 08:45 runtime_log.err
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas       665 Nov 28 08:45 nJuNDm4eMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyzMKDm7Qz8lm.diag
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 08:46 boinc_mmap_file
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas        29 Nov 28 08:46 wrapper_checkpoint.txt
[2025-11-28 08:46:02] -rw-r--r--. 1 boincer umatlas     21877 Nov 28 08:46 stderr.txt
[2025-11-28 08:46:02] HITS file was successfully produced:
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas 927066923 Nov 28 08:42 shared/HITS.pool.root.1
[2025-11-28 08:46:02]  *** Contents of shared directory: ***
[2025-11-28 08:46:02] total 1314036
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas 409691093 Nov 27 19:10 ATLAS.root_0
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 19:10 start_atlas.sh
[2025-11-28 08:46:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 19:10 input.tar.gz
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas 927066923 Nov 28 08:42 HITS.pool.root.1
[2025-11-28 08:46:02] -rw-------. 1 boincer umatlas   8192000 Nov 28 08:45 result.tar.gz
08:46:04 (1963645): run_atlas exited; CPU time 145874.151451
08:46:04 (1963645): called boinc_finish(0)

</stderr_txt>
]]>

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