Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:19:11 (3015587): wrapper (7.7.26015): starting
18:19:11 (3015587): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 18:19:11] Arguments: --nthreads 9
[2025-11-27 18:19:11] Threads: 9
[2025-11-27 18:19:11] Checking for CVMFS
[2025-11-27 18:19:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 18:19:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 18:19:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 18:19:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 18:19:12] 2.13.3.0 7314 32080 260936 153390 3 295 22238901 40960001 62550 16776704 0 480065883 99.751 305244933 50561 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 18:19:12] CVMFS is ok
[2025-11-27 18:19:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 18:19:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 18:19:12] Further information can be found at the LHC@home message board.
[2025-11-27 18:19:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:19:12] Checking for apptainer binary...
[2025-11-27 18:19:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 18:19:12] Running /usr/bin/apptainer --version
[2025-11-27 18:19:12] apptainer version 1.4.4-1.el9
[2025-11-27 18:19:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:19:12] c8-16-1.aglt2.org
[2025-11-27 18:19:12] apptainer works
[2025-11-27 18:19:12] Set ATHENA_PROC_NUMBER=9
[2025-11-27 18:19:12] Set ATHENA_CORE_NUMBER=9
[2025-11-27 18:19:12] Starting ATLAS job with PandaID=6898120356
[2025-11-27 18:19:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:08:34]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:08:34] 2025-11-28 07:07:46,073 | INFO     | time since job start (28091s) is within the limit (172800.0s)
[2025-11-28 02:08:34] 2025-11-28 07:07:46,294 | INFO     | monitor loop #1557: job 0:6898120356 is in state 'finished'
[2025-11-28 02:08:34] 2025-11-28 07:07:46,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:08:34] 2025-11-28 07:07:48,081 | INFO     | time since job start (28093s) is within the limit (172800.0s)
[2025-11-28 02:08:34] 2025-11-28 07:07:48,811 | INFO     | monitor loop #1558: job 0:6898120356 is in state 'finished'
[2025-11-28 02:08:34] 2025-11-28 07:07:48,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:08:34] 2025-11-28 07:07:51,186 | INFO     | PID=3022250 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:08:34] 2025-11-28 07:07:51,186 | INFO     | .. there are 109 such processes running
[2025-11-28 02:08:34] 2025-11-28 07:07:51,320 | INFO     | monitor loop #1559: job 0:6898120356 is in state 'finished'
[2025-11-28 02:08:34] 2025-11-28 07:07:51,320 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:08:34] 2025-11-28 07:07:52,187 | INFO     | time since job start (28097s) is within the limit (172800.0s)
[2025-11-28 02:08:34] 2025-11-28 07:07:53,781 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 02:08:34] 2025-11-28 07:07:53,790 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9911171875005
[2025-11-28 02:08:34] 2025-11-28 07:07:53,825 | INFO     | monitor loop #1560: job 0:6898120356 is in state 'finished'
[2025-11-28 02:08:34] 2025-11-28 07:07:53,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:08:34] 2025-11-28 07:07:53,885 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898120356/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:08:34] 2025-11-28 07:07:53,910 | INFO     | extracted standard info from prmon json
[2025-11-28 02:08:34] 2025-11-28 07:07:53,910 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:08:34] 2025-11-28 07:07:53,910 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:08:34] 2025-11-28 07:07:53,956 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:08:34] 2025-11-28 07:07:53,956 | INFO     | sum of square deviations: 29987022434.1568
[2025-11-28 02:08:34] 2025-11-28 07:07:53,959 | INFO     | sum of deviations: -618041243886.1174
[2025-11-28 02:08:34] 2025-11-28 07:07:53,979 | INFO     | mean x: 1764299600.2026143
[2025-11-28 02:08:34] 2025-11-28 07:07:53,979 | INFO     | mean y: 2929465.431372549
[2025-11-28 02:08:34] 2025-11-28 07:07:53,979 | INFO     | intersect: 36365656771.59329
[2025-11-28 02:08:34] 2025-11-28 07:07:53,980 | INFO     | chi2: 23.616326312694465
[2025-11-28 02:08:34] 2025-11-28 07:07:53,980 | INFO     | sum of square deviations: 29017898194.34563
[2025-11-28 02:08:34] 2025-11-28 07:07:54,008 | INFO     | sum of deviations: -459374803634.81506
[2025-11-28 02:08:34] 2025-11-28 07:07:54,008 | INFO     | mean x: 1764299447.715859
[2025-11-28 02:08:34] 2025-11-28 07:07:54,008 | INFO     | mean y: 2954438.140969163
[2025-11-28 02:08:34] 2025-11-28 07:07:54,008 | INFO     | intersect: 27933120397.073612
[2025-11-28 02:08:34] 2025-11-28 07:07:54,009 | INFO     | chi2: 19.793267301411113
[2025-11-28 02:08:34] 2025-11-28 07:07:54,009 | INFO     | current chi2=19.793267301411113 (change=16.18820370562184 %)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,009 | INFO     | right removable region: 453
[2025-11-28 02:08:34] 2025-11-28 07:07:54,009 | INFO     | sum of square deviations: 29017617109.20041
[2025-11-28 02:08:34] 2025-11-28 07:07:54,012 | INFO     | sum of deviations: -720328885526.575
[2025-11-28 02:08:34] 2025-11-28 07:07:54,012 | INFO     | mean x: 1764299752.7114537
[2025-11-28 02:08:34] 2025-11-28 07:07:54,012 | INFO     | mean y: 2945489.5528634363
[2025-11-28 02:08:34] 2025-11-28 07:07:54,037 | INFO     | intersect: 43799652497.672615
[2025-11-28 02:08:34] 2025-11-28 07:07:54,038 | INFO     | chi2: 21.930894712199215
[2025-11-28 02:08:34] 2025-11-28 07:07:54,038 | INFO     | current chi2=21.930894712199215 (change=7.13672219031493 %)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,038 | INFO     | left removable region: 10
[2025-11-28 02:08:34] 2025-11-28 07:07:54,038 | INFO     | sum of square deviations: 26959210187.15582
[2025-11-28 02:08:34] 2025-11-28 07:07:54,040 | INFO     | sum of deviations: -535733955549.0092
[2025-11-28 02:08:34] 2025-11-28 07:07:54,040 | INFO     | mean x: 1764299722.241535
[2025-11-28 02:08:34] 2025-11-28 07:07:54,041 | INFO     | mean y: 2978504.1309255078
[2025-11-28 02:08:34] 2025-11-28 07:07:54,041 | INFO     | intersect: 35063177315.91939
[2025-11-28 02:08:34] 2025-11-28 07:07:54,063 | INFO     | chi2: 17.073978040664333
[2025-11-28 02:08:34] 2025-11-28 07:07:54,063 | INFO     | current memory leak: -19.87 B/s (using 443 data points, chi2=17.07)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | could have reported an average CPU frequency of 3799 MHz (19 samples)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | ..............................
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . Timing measurements:
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . get job = 0 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . initial setup = 2 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . payload setup = 14 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . stage-in = 0 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . payload execution = 27989 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . stage-out = 10 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | . log creation = 2 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,064 | INFO     | ..............................
[2025-11-28 02:08:34] 2025-11-28 07:07:54,225 | INFO     | time since job start (28099s) is within the limit (172800.0s)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,360 | INFO     | 28101s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | 
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | job summary report
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | --------------------------------------------------
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | PanDA job id: 6898120356
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | task id: 47556161
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | errors: (none)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | pilot state: finished 
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | transexitcode: 0
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | exeerrorcode: 0
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | exeerrordiag: 
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | exitcode: 0
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | exitmsg: OK
[2025-11-28 02:08:34] 2025-11-28 07:07:54,407 | INFO     | cpuconsumptiontime: 132107 s
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | nevents: 1000
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | neventsw: 0
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | pid: 3032392
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | pgrp: 3032392
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | corecount: 9
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | event service: False
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | sizes: {0: 2284264, 1: 2284264, 11: 2284292, 12: 2284582, 22: 2284610, 28008: 2322224, 28019: 2331302, 28066: 2331492}
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | --------------------------------------------------
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | 
[2025-11-28 02:08:34] 2025-11-28 07:07:54,408 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | job 6898120356 has completed (purged errors)
[2025-11-28 02:08:34] 2025-11-28 07:07:54,759 | INFO     | overall cleanup function is called
[2025-11-28 02:08:34] 2025-11-28 07:07:55,829 | INFO     | --- collectZombieJob: --- 10, [3032392]
[2025-11-28 02:08:34] 2025-11-28 07:07:55,829 | INFO     | zombie collector waiting for pid 3032392
[2025-11-28 02:08:34] 2025-11-28 07:07:55,829 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:08:34] 2025-11-28 07:07:55,829 | INFO     | collected zombie processes
[2025-11-28 02:08:34] 2025-11-28 07:07:55,829 | INFO     | will attempt to kill all subprocesses of pid=3032392
[2025-11-28 02:08:34] 2025-11-28 07:07:58,946 | INFO     | process IDs to be killed: [3032392] (in reverse order)
[2025-11-28 02:08:34] 2025-11-28 07:07:59,604 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:08:34] 2025-11-28 07:07:59,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:08:34] 2025-11-28 07:08:00,240 | INFO     | did not find any defunct processes belonging to 3032392
[2025-11-28 02:08:34] 2025-11-28 07:08:00,346 | INFO     | did not find any defunct processes belonging to 3032392
[2025-11-28 02:08:34] 2025-11-28 07:08:00,417 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:08:34] 2025-11-28 07:08:00,417 | INFO     | ready for new job
[2025-11-28 02:08:34] 2025-11-28 07:08:00,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:08:34] 2025-11-28 07:08:00,507 | INFO     | ***************************************
[2025-11-28 02:08:34] 2025-11-28 07:08:00,507 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:08:34] 2025-11-28 07:08:00,507 | INFO     | ***************************************
[2025-11-28 02:08:34] 2025-11-28 07:08:00,507 | INFO     | 
[2025-11-28 02:08:34] 2025-11-28 07:08:00,586 | INFO     | architecture information:
[2025-11-28 02:08:34] 2025-11-28 07:08:00,598 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:08:34] 2025-11-28 07:08:00,698 | INFO     | cat /etc/os-release:
[2025-11-28 02:08:34] NAME="CentOS Linux"
[2025-11-28 02:08:34] VERSION="7 (Core)"
[2025-11-28 02:08:34] ID="centos"
[2025-11-28 02:08:34] ID_LIKE="rhel fedora"
[2025-11-28 02:08:34] VERSION_ID="7"
[2025-11-28 02:08:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:08:34] ANSI_COLOR="0;31"
[2025-11-28 02:08:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:08:34] HOME_URL="https://www.centos.org/"
[2025-11-28 02:08:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:08:34] 
[2025-11-28 02:08:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:08:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:08:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:08:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:08:34] 
[2025-11-28 02:08:34] 2025-11-28 07:08:00,698 | INFO     | ***************************************
[2025-11-28 02:08:34] 2025-11-28 07:08:01,208 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-28 02:08:34] 2025-11-28 07:08:01,268 | INFO     | sufficient remaining disk space (155953659904 B)
[2025-11-28 02:08:34] 2025-11-28 07:08:01,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:08:34] 2025-11-28 07:08:01,269 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:08:34] 2025-11-28 07:08:01,269 | INFO     | update_server=False
[2025-11-28 02:08:34] 2025-11-28 07:08:01,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:08:34] 2025-11-28 07:08:01,438 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 02:08:34] 2025-11-28 07:08:01,438 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 02:08:34] 2025-11-28 07:08:01,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:08:34] 2025-11-28 07:08:01,438 | INFO     | will abort loop
[2025-11-28 02:08:34] 2025-11-28 07:08:01,439 | INFO     | all payload control threads have been joined
[2025-11-28 02:08:34] 2025-11-28 07:08:01,575 | INFO     | all data control threads have been joined
[2025-11-28 02:08:34] 2025-11-28 07:08:02,043 | INFO     | all job control threads have been joined
[2025-11-28 02:08:34] 2025-11-28 07:08:02,275 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:02,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:08:34] 2025-11-28 07:08:02,445 | INFO     | [payload] control thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:02,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:02,449 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:02,581 | INFO     | [data] control thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:02,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:08:34] 2025-11-28 07:08:02,920 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,050 | INFO     | [job] control thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,073 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,127 | INFO     | [job] validate thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,406 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,434 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:08:34] 2025-11-28 07:08:03,629 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:03,741 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:04,297 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:04,502 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:06,899 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:08:34] 2025-11-28 07:08:24,900 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:08:34] 2025-11-28 07:08:26,539 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474894440256)>', '<ExcThread(monitor, started 140474379642624)>']
[2025-11-28 02:08:34] 2025-11-28 07:08:29,803 | INFO     | PID=3022250 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:08:34] 2025-11-28 07:08:29,804 | INFO     | .. there are 109 such processes running
[2025-11-28 02:08:34] 2025-11-28 07:08:29,808 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:08:34] 2025-11-28 07:08:29,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:08:34] 2025-11-28 07:08:29,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:08:34] 2025-11-28 07:08:29,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:08:34] 2025-11-28 07:08:29,809 | INFO     | [monitor] control thread has ended
[2025-11-28 02:08:34] 2025-11-28 07:08:31,584 | INFO     | all workflow threads have been joined
[2025-11-28 02:08:34] 2025-11-28 07:08:31,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:08:34] 2025-11-28 07:08:31,584 | INFO     | traces error code: 0
[2025-11-28 02:08:34] 2025-11-28 07:08:31,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:08:34] 2025-11-28 07:08:32,644 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:08:34] 2025-11-28 07:08:32,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:08:34] 2025-11-28 07:08:32,726 [wrapper] pilotpid: 3022250
[2025-11-28 02:08:34] 2025-11-28 07:08:32,770 [wrapper] Pilot exit status: 0
[2025-11-28 02:08:34] 2025-11-28 07:08:32,903 [wrapper] pandaids: 6898120356
[2025-11-28 02:08:34] 2025-11-28 07:08:33,386 [wrapper] cleanup supervisor_pilot 3455927 3022251
[2025-11-28 02:08:34] 2025-11-28 07:08:33,402 [wrapper] Test setup, not cleaning
[2025-11-28 02:08:34] 2025-11-28 07:08:33,475 [wrapper] apfmon messages muted
[2025-11-28 02:08:34] 2025-11-28 07:08:33,514 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:08:34] 2025-11-28 07:08:33,548 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:08:34]  *** Error codes and diagnostics ***
[2025-11-28 02:08:34]     "exeErrorCode": 0,
[2025-11-28 02:08:34]     "exeErrorDiag": "",
[2025-11-28 02:08:34]     "pilotErrorCode": 0,
[2025-11-28 02:08:34]     "pilotErrorDiag": "",
[2025-11-28 02:08:34]  *** Listing of results directory ***
[2025-11-28 02:08:34] total 1290144
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:26 queuedata.json
[2025-11-28 02:08:34] -rwx------. 1 boincer umatlas     36292 Nov 25 22:27 runpilot2-wrapper.sh
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas       100 Nov 27 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:08:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 18:19 run_atlas
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas       105 Nov 27 18:19 job.xml
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas 407962490 Nov 27 18:19 EVNT.47483658._002424.pool.root.1
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 18:19 start_atlas.sh
[2025-11-28 02:08:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 18:19 shared
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 18:19 input.tar.gz
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas         0 Nov 27 18:19 boinc_lockfile
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 18:19 pandaJob.out
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas        57 Nov 27 18:19 setup.sh.local
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas    991532 Nov 27 18:19 agis_schedconf.cvmfs.json
[2025-11-28 02:08:34] drwx------. 5 boincer umatlas      4096 Nov 27 18:19 pilot3
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas       532 Nov 28 01:33 boinc_task_state.xml
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas      7174 Nov 28 02:04 init_data.xml
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas 898791967 Nov 28 02:06 HITS.47556161._004066.pool.root.1
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas      1051 Nov 28 02:06 memory_monitor_summary.json
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas   1516240 Nov 28 02:07 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas   1814891 Nov 28 02:07 log.47556161._004066.job.log.tgz.1
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas      8596 Nov 28 02:07 heartbeat.json
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas        95 Nov 28 02:08 pilot_heartbeat.json
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 02:08 boinc_mmap_file
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas        29 Nov 28 02:08 wrapper_checkpoint.txt
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas      5012 Nov 28 02:08 pilotlog.txt
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas   3402815 Nov 28 02:08 log.47556161._004066.job.log.1
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas       353 Nov 28 02:08 output.list
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas       620 Nov 28 02:08 runtime_log
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas   5232640 Nov 28 02:08 result.tar.gz
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas      9338 Nov 28 02:08 runtime_log.err
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas       659 Nov 28 02:08 29vLDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpoMKDmI9Ipmm.diag
[2025-11-28 02:08:34] -rw-r--r--. 1 boincer umatlas     21841 Nov 28 02:08 stderr.txt
[2025-11-28 02:08:34] HITS file was successfully produced:
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas 898791967 Nov 28 02:06 shared/HITS.pool.root.1
[2025-11-28 02:08:34]  *** Contents of shared directory: ***
[2025-11-28 02:08:34] total 1281844
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas 407962490 Nov 27 18:19 ATLAS.root_0
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 18:19 start_atlas.sh
[2025-11-28 02:08:34] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 18:19 input.tar.gz
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas 898791967 Nov 28 02:06 HITS.pool.root.1
[2025-11-28 02:08:34] -rw-------. 1 boincer umatlas   5232640 Nov 28 02:08 result.tar.gz
02:08:35 (3015587): run_atlas exited; CPU time 132776.541647
02:08:35 (3015587): called boinc_finish(0)

</stderr_txt>
]]>

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