Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:41:10 (18035): wrapper (7.7.26015): starting
00:41:10 (18035): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 00:41:10] Arguments: --nthreads 8
[2025-11-30 00:41:10] Threads: 8
[2025-11-30 00:41:10] Checking for CVMFS
[2025-11-30 00:41:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:41:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:41:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:41:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:41:12] 2.11.2.0 942 177168 127060 153461 2 85 19120201 25165824 2504 130560 12 61834568 99.902 32559782 2284 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 00:41:12] CVMFS is ok
[2025-11-30 00:41:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:41:12] Checking for apptainer binary...
[2025-11-30 00:41:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:41:12] Running /usr/bin/apptainer --version
[2025-11-30 00:41:12] apptainer version 1.3.2-1.el7
[2025-11-30 00:41:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:41:43] cg-vwn460.simple-grid.lan
[2025-11-30 00:41:43] apptainer works
[2025-11-30 00:41:43] Set ATHENA_PROC_NUMBER=8
[2025-11-30 00:41:43] Set ATHENA_CORE_NUMBER=8
[2025-11-30 00:41:43] Starting ATLAS job with PandaID=6895386600
[2025-11-30 00:41:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 23:00:00]  *** The last 200 lines of the pilot log: ***
[2025-11-30 23:00:00] 2025-11-30 21:58:43,662 | INFO     | time since job start (79991s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:45,669 | INFO     | time since job start (79993s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:45,884 | INFO     | monitor loop #5434: job 0:6895386600 is in state 'finished'
[2025-11-30 23:00:00] 2025-11-30 21:58:45,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 23:00:00] 2025-11-30 21:58:47,683 | INFO     | time since job start (79995s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:48,389 | INFO     | monitor loop #5435: job 0:6895386600 is in state 'finished'
[2025-11-30 23:00:00] 2025-11-30 21:58:48,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 23:00:00] 2025-11-30 21:58:49,689 | INFO     | time since job start (79997s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:50,895 | INFO     | monitor loop #5436: job 0:6895386600 is in state 'finished'
[2025-11-30 23:00:00] 2025-11-30 21:58:50,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 23:00:00] 2025-11-30 21:58:51,695 | INFO     | time since job start (79999s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:52,859 | INFO     | PID=21893 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 23:00:00] 2025-11-30 21:58:52,859 | INFO     | .. there are 9 such processes running
[2025-11-30 23:00:00] 2025-11-30 21:58:53,400 | INFO     | monitor loop #5437: job 0:6895386600 is in state 'finished'
[2025-11-30 23:00:00] 2025-11-30 21:58:53,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 23:00:00] 2025-11-30 21:58:53,860 | INFO     | time since job start (80001s) is within the limit (172800.0s)
[2025-11-30 23:00:00] 2025-11-30 21:58:53,870 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 23:00:00] 2025-11-30 21:58:53,871 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-30 23:00:00] 2025-11-30 21:58:53,872 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895386600/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 23:00:00] 2025-11-30 21:58:53,873 | INFO     | extracted standard info from prmon json
[2025-11-30 23:00:00] 2025-11-30 21:58:53,873 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 23:00:00] 2025-11-30 21:58:53,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 23:00:00] 2025-11-30 21:58:53,902 | INFO     | fitting pss+swap vs Time
[2025-11-30 23:00:00] 2025-11-30 21:58:53,912 | INFO     | sum of square deviations: 684400974916.7356
[2025-11-30 23:00:00] 2025-11-30 21:58:53,986 | INFO     | sum of deviations: 2596143910158.621
[2025-11-30 23:00:00] 2025-11-30 21:58:53,986 | INFO     | mean x: 1764500102.546083
[2025-11-30 23:00:00] 2025-11-30 21:58:53,986 | INFO     | mean y: 2833605.5729646697
[2025-11-30 23:00:00] 2025-11-30 21:58:53,986 | INFO     | intersect: -6690459308.360404
[2025-11-30 23:00:00] 2025-11-30 21:58:53,988 | INFO     | chi2: 24.296666150960156
[2025-11-30 23:00:00] 2025-11-30 21:58:53,990 | INFO     | sum of square deviations: 676546815143.7428
[2025-11-30 23:00:00] 2025-11-30 21:58:54,043 | INFO     | sum of deviations: 3030097102491.6885
[2025-11-30 23:00:00] 2025-11-30 21:58:54,044 | INFO     | mean x: 1764499950.0501156
[2025-11-30 23:00:00] 2025-11-30 21:58:54,044 | INFO     | mean y: 2842030.7586738626
[2025-11-30 23:00:00] 2025-11-30 21:58:54,044 | INFO     | intersect: -7899946167.0656185
[2025-11-30 23:00:00] 2025-11-30 21:58:54,045 | INFO     | chi2: 20.97759531598157
[2025-11-30 23:00:00] 2025-11-30 21:58:54,045 | INFO     | current chi2=20.97759531598157 (change=13.660601888162432 %)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,045 | INFO     | right removable region: 1296
[2025-11-30 23:00:00] 2025-11-30 21:58:54,047 | INFO     | sum of square deviations: 676545984323.7433
[2025-11-30 23:00:00] 2025-11-30 21:58:54,098 | INFO     | sum of deviations: 2052850456402.4348
[2025-11-30 23:00:00] 2025-11-30 21:58:54,098 | INFO     | mean x: 1764500255.0501156
[2025-11-30 23:00:00] 2025-11-30 21:58:54,098 | INFO     | mean y: 2844152.731688512
[2025-11-30 23:00:00] 2025-11-30 21:58:54,099 | INFO     | intersect: -5351197165.71993
[2025-11-30 23:00:00] 2025-11-30 21:58:54,100 | INFO     | chi2: 19.64262714574228
[2025-11-30 23:00:00] 2025-11-30 21:58:54,100 | INFO     | current chi2=19.64262714574228 (change=19.155051875435827 %)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,100 | INFO     | left removable region: 10
[2025-11-30 23:00:00] 2025-11-30 21:58:54,102 | INFO     | sum of square deviations: 659478024583.0079
[2025-11-30 23:00:00] 2025-11-30 21:58:54,145 | INFO     | sum of deviations: 2125316337344.6174
[2025-11-30 23:00:00] 2025-11-30 21:58:54,145 | INFO     | mean x: 1764500224.559098
[2025-11-30 23:00:00] 2025-11-30 21:58:54,145 | INFO     | mean y: 2863533.7418351476
[2025-11-30 23:00:00] 2025-11-30 21:58:54,145 | INFO     | intersect: -5683635507.48842
[2025-11-30 23:00:00] 2025-11-30 21:58:54,147 | INFO     | chi2: 12.310111321738606
[2025-11-30 23:00:00] 2025-11-30 21:58:54,147 | INFO     | current memory leak: 3.22 B/s (using 1286 data points, chi2=12.31)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,148 | INFO     | could have reported an average CPU frequency of 2250 MHz (45 samples)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | ..............................
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . Timing measurements:
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . get job = 0 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . initial setup = 7 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . payload setup = 144 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . stage-in = 0 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . payload execution = 79561 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . stage-out = 4 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | . log creation = 1 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,149 | INFO     | ..............................
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | 
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | job summary report
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | --------------------------------------------------
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | PanDA job id: 6895386600
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | task id: 47556161
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | errors: (none)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | pilot state: finished 
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | transexitcode: 0
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | exeerrorcode: 0
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | exeerrordiag: 
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | exitcode: 0
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | exitmsg: OK
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | cpuconsumptiontime: 297684 s
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | nevents: 1000
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | neventsw: 0
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | pid: 28694
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | pgrp: 28694
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | corecount: 8
[2025-11-30 23:00:00] 2025-11-30 21:58:54,258 | INFO     | event service: False
[2025-11-30 23:00:00] 2025-11-30 21:58:54,259 | INFO     | sizes: {0: 2283432, 1: 2284117, 2: 2284316, 13: 2284316, 23: 2284372, 34: 2284400, 45: 2284556, 56: 2284584, 66: 2284612, 77: 2284640, 88: 2284696, 99: 2285004, 10
[2025-11-30 23:00:00] 2025-11-30 21:58:54,259 | INFO     | --------------------------------------------------
[2025-11-30 23:00:00] 2025-11-30 21:58:54,259 | INFO     | 
[2025-11-30 23:00:00] 2025-11-30 21:58:54,259 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-30 23:00:00] 2025-11-30 21:58:54,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | job 6895386600 has completed (purged errors)
[2025-11-30 23:00:00] 2025-11-30 21:58:54,726 | INFO     | overall cleanup function is called
[2025-11-30 23:00:00] 2025-11-30 21:58:55,746 | INFO     | --- collectZombieJob: --- 10, [28694]
[2025-11-30 23:00:00] 2025-11-30 21:58:55,747 | INFO     | zombie collector waiting for pid 28694
[2025-11-30 23:00:00] 2025-11-30 21:58:55,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 23:00:00] 2025-11-30 21:58:55,747 | INFO     | collected zombie processes
[2025-11-30 23:00:00] 2025-11-30 21:58:55,747 | INFO     | will attempt to kill all subprocesses of pid=28694
[2025-11-30 23:00:00] 2025-11-30 21:58:55,844 | INFO     | process IDs to be killed: [28694] (in reverse order)
[2025-11-30 23:00:00] 2025-11-30 21:58:56,428 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 23:00:00] 2025-11-30 21:58:56,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 23:00:00] 2025-11-30 21:58:56,431 | INFO     | did not find any defunct processes belonging to 28694
[2025-11-30 23:00:00] 2025-11-30 21:58:56,434 | INFO     | did not find any defunct processes belonging to 28694
[2025-11-30 23:00:00] 2025-11-30 21:58:56,498 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 23:00:00] 2025-11-30 21:58:56,498 | INFO     | ready for new job
[2025-11-30 23:00:00] 2025-11-30 21:58:56,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 23:00:00] 2025-11-30 21:58:56,503 | INFO     | ***************************************
[2025-11-30 23:00:00] 2025-11-30 21:58:56,503 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 23:00:00] 2025-11-30 21:58:56,503 | INFO     | ***************************************
[2025-11-30 23:00:00] 2025-11-30 21:58:56,503 | INFO     | 
[2025-11-30 23:00:00] 2025-11-30 21:58:56,504 | INFO     | pilot is running in a VM
[2025-11-30 23:00:00] 2025-11-30 21:58:56,504 | INFO     | architecture information:
[2025-11-30 23:00:00] 2025-11-30 21:58:56,517 | INFO     | executing command: cat /etc/os-release
[2025-11-30 23:00:00] 2025-11-30 21:58:56,712 | INFO     | cat /etc/os-release:
[2025-11-30 23:00:00] NAME="CentOS Linux"
[2025-11-30 23:00:00] VERSION="7 (Core)"
[2025-11-30 23:00:00] ID="centos"
[2025-11-30 23:00:00] ID_LIKE="rhel fedora"
[2025-11-30 23:00:00] VERSION_ID="7"
[2025-11-30 23:00:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 23:00:00] ANSI_COLOR="0;31"
[2025-11-30 23:00:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 23:00:00] HOME_URL="https://www.centos.org/"
[2025-11-30 23:00:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 23:00:00] 
[2025-11-30 23:00:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 23:00:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 23:00:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 23:00:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 23:00:00] 
[2025-11-30 23:00:00] 2025-11-30 21:58:56,712 | INFO     | ***************************************
[2025-11-30 23:00:00] 2025-11-30 21:58:57,216 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-30 23:00:00] 2025-11-30 21:58:57,450 | INFO     | sufficient remaining disk space (488292483072 B)
[2025-11-30 23:00:00] 2025-11-30 21:58:57,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 23:00:00] 2025-11-30 21:58:57,451 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 23:00:00] 2025-11-30 21:58:57,451 | INFO     | update_server=False
[2025-11-30 23:00:00] 2025-11-30 21:58:57,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 23:00:00] 2025-11-30 21:58:57,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 23:00:00] 2025-11-30 21:58:57,452 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 23:00:00] 2025-11-30 21:58:57,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 23:00:00] 2025-11-30 21:58:57,461 | INFO     | aborting loop
[2025-11-30 23:00:00] 2025-11-30 21:58:57,641 | INFO     | all data control threads have been joined
[2025-11-30 23:00:00] 2025-11-30 21:58:58,018 | INFO     | all job control threads have been joined
[2025-11-30 23:00:00] 2025-11-30 21:58:58,457 | INFO     | [job] retrieve thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:58,467 | INFO     | [job] job monitor thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:58,647 | INFO     | [data] control thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:58,763 | INFO     | [job] validate thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:58,801 | INFO     | all payload control threads have been joined
[2025-11-30 23:00:00] 2025-11-30 21:58:59,020 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,025 | INFO     | [job] control thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,105 | INFO     | [payload] validate_post thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 23:00:00] 2025-11-30 21:58:59,297 | INFO     | [payload] failed_post thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,459 | INFO     | [data] copytool_out thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,477 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,550 | INFO     | [data] copytool_in thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,631 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,808 | INFO     | [payload] control thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:58:59,934 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:59:00,278 | INFO     | [job] queue monitor thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:59:01,462 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 23:00:00] 2025-11-30 21:59:27,101 | INFO     | PID=21893 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 23:00:00] 2025-11-30 21:59:27,102 | INFO     | .. there are 9 such processes running
[2025-11-30 23:00:00] 2025-11-30 21:59:27,102 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 23:00:00] 2025-11-30 21:59:27,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 23:00:00] 2025-11-30 21:59:27,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 23:00:00] 2025-11-30 21:59:50,715 | INFO     | [monitor] cgroup control has ended
[2025-11-30 23:00:00] 2025-11-30 21:59:52,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551206569792)>', '<ExcThread(monitor, started 140550749529856)>']
[2025-11-30 23:00:00] 2025-11-30 21:59:52,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 23:00:00] 2025-11-30 21:59:52,248 | INFO     | [monitor] control thread has ended
[2025-11-30 23:00:00] 2025-11-30 21:59:57,161 | INFO     | all workflow threads have been joined
[2025-11-30 23:00:00] 2025-11-30 21:59:57,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 23:00:00] 2025-11-30 21:59:57,162 | INFO     | traces error code: 0
[2025-11-30 23:00:00] 2025-11-30 21:59:57,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 23:00:00] 2025-11-30 21:59:57,524 [wrapper] ==== pilot stdout END ====
[2025-11-30 23:00:00] 2025-11-30 21:59:57,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 23:00:00] 2025-11-30 21:59:57,709 [wrapper] pilotpid: 21893
[2025-11-30 23:00:00] 2025-11-30 21:59:57,771 [wrapper] Pilot exit status: 0
[2025-11-30 23:00:00] 2025-11-30 21:59:58,174 [wrapper] pandaids: 6895386600
[2025-11-30 23:00:00] 2025-11-30 21:59:59,269 [wrapper] cleanup supervisor_pilot 32141 21894
[2025-11-30 23:00:00] 2025-11-30 21:59:59,368 [wrapper] Test setup, not cleaning
[2025-11-30 23:00:00] 2025-11-30 21:59:59,453 [wrapper] apfmon messages muted
[2025-11-30 23:00:00] 2025-11-30 21:59:59,535 [wrapper] ==== wrapper stdout END ====
[2025-11-30 23:00:00] 2025-11-30 21:59:59,632 [wrapper] ==== wrapper stderr END ====
[2025-11-30 23:00:00]  *** Error codes and diagnostics ***
[2025-11-30 23:00:00]     "exeErrorCode": 0,
[2025-11-30 23:00:00]     "exeErrorDiag": "",
[2025-11-30 23:00:00]     "pilotErrorCode": 0,
[2025-11-30 23:00:00]     "pilotErrorDiag": "",
[2025-11-30 23:00:00]  *** Listing of results directory ***
[2025-11-30 23:00:00] total 1325248
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc    576529 Nov 24 06:37 pilot3.tar.gz
[2025-11-30 23:00:00] -rwx------. 1 boinc boinc     36292 Nov 24 06:49 runpilot2-wrapper.sh
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc      5112 Nov 24 06:49 queuedata.json
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc       100 Nov 30 00:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 23:00:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 00:41 run_atlas
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc       105 Nov 30 00:41 job.xml
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc 408515350 Nov 30 00:41 EVNT.47483658._002022.pool.root.1
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc     15847 Nov 30 00:41 start_atlas.sh
[2025-11-30 23:00:00] drwxrwx--x. 2 boinc boinc        68 Nov 30 00:41 shared
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc    590100 Nov 30 00:41 input.tar.gz
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc      6392 Nov 30 00:41 init_data.xml
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc         0 Nov 30 00:41 boinc_lockfile
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc      2783 Nov 30 00:41 pandaJob.out
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc    991826 Nov 30 00:45 agis_schedconf.cvmfs.json
[2025-11-30 23:00:00] drwx------. 5 boinc boinc      4096 Nov 30 00:45 pilot3
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc       533 Nov 30 22:33 boinc_task_state.xml
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc 918456197 Nov 30 22:55 HITS.47556161._000058.pool.root.1
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc      1032 Nov 30 22:57 memory_monitor_summary.json
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc   1516240 Nov 30 22:57 agis_ddmendpoints.agis.ALL.json
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc   2397715 Nov 30 22:57 log.47556161._000058.job.log.tgz.1
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc        95 Nov 30 22:58 pilot_heartbeat.json
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc      7941 Nov 30 22:58 heartbeat.json
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc      8192 Nov 30 22:59 boinc_mmap_file
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc        29 Nov 30 22:59 wrapper_checkpoint.txt
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc      4884 Nov 30 22:59 pilotlog.txt
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc  10691341 Nov 30 22:59 log.47556161._000058.job.log.1
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc       353 Nov 30 23:00 output.list
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc       620 Nov 30 23:00 runtime_log
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc  13107200 Nov 30 23:00 result.tar.gz
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc      8817 Nov 30 23:00 runtime_log.err
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc       662 Nov 30 23:00 n0ELDmqceh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeULKDmkvrNWm.diag
[2025-11-30 23:00:00] -rw-r--r--. 1 boinc boinc     21498 Nov 30 23:00 stderr.txt
[2025-11-30 23:00:00] HITS file was successfully produced:
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc 918456197 Nov 30 22:55 shared/HITS.pool.root.1
[2025-11-30 23:00:00]  *** Contents of shared directory: ***
[2025-11-30 23:00:00] total 1309272
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc 408515350 Nov 30 00:41 ATLAS.root_0
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc     15847 Nov 30 00:41 start_atlas.sh
[2025-11-30 23:00:00] -rw-r--r--. 2 boinc boinc    590100 Nov 30 00:41 input.tar.gz
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc 918456197 Nov 30 22:55 HITS.pool.root.1
[2025-11-30 23:00:00] -rw-------. 1 boinc boinc  13107200 Nov 30 23:00 result.tar.gz
23:00:01 (18035): run_atlas exited; CPU time 298202.944310
23:00:01 (18035): called boinc_finish(0)

</stderr_txt>
]]>

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