Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:58:11 (30518): wrapper (7.7.26015): starting
02:58:11 (30518): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 02:58:11] Arguments: --nthreads 8
[2025-11-28 02:58:11] Threads: 8
[2025-11-28 02:58:11] Checking for CVMFS
[2025-11-28 02:58:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 02:58:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 02:58:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 02:58:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 02:58:12] 2.11.0.0 4053 67762 91464 153392 3 65 2309758 4096001 151 130560 1 8270536 99.564 7497462 734 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-28 02:58:12] CVMFS is ok
[2025-11-28 02:58:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 02:58:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 02:58:12] Further information can be found at the LHC@home message board.
[2025-11-28 02:58:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 02:58:12] Checking for apptainer binary...
[2025-11-28 02:58:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-28 02:58:12] apptainer is not installed, using version from CVMFS
[2025-11-28 02:58:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 02:58:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_10930668/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node309
[2025-11-28 02:58:12] apptainer works
[2025-11-28 02:58:12] Set ATHENA_PROC_NUMBER=8
[2025-11-28 02:58:12] Set ATHENA_CORE_NUMBER=8
[2025-11-28 02:58:12] Starting ATLAS job with PandaID=6895674846
[2025-11-28 02:58:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10930668/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:21:50]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:21:50] 2025-11-28 06:20:44,793 | INFO     | intersect: -149237829488.2643
[2025-11-28 07:21:50] 2025-11-28 06:20:44,793 | INFO     | chi2: 4.717992857710467
[2025-11-28 07:21:50] 2025-11-28 06:20:44,793 | INFO     | sum of square deviations: 5021496942.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | sum of deviations: 482294193406.99976
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | mean x: 1764302802.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | mean y: 3119546.604743083
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | intersect: -169450931037.24197
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | chi2: 3.229616454138686
[2025-11-28 07:21:50] 2025-11-28 06:20:44,794 | INFO     | current chi2=3.229616454138686 (change=31.546813411117707 %)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,795 | INFO     | sum of square deviations: 4729621702.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | sum of deviations: 419387859593.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | mean x: 1764302649.5
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | mean y: 3086688.919354839
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | intersect: -156442218764.40546
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | chi2: 2.8796409061293224
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | current chi2=2.8796409061293224 (change=10.836443056910893 %)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | right removable region: 247
[2025-11-28 07:21:50] 2025-11-28 06:20:44,796 | INFO     | sum of square deviations: 5021496942.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | sum of deviations: 394419348499.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | mean x: 1764303107.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | mean y: 3131804.7154150195
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | intersect: -138576118577.25195
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | chi2: 3.4173780789864674
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | current chi2=3.4173780789864674 (change=27.56712055208913 %)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,797 | INFO     | sum of square deviations: 4729621702.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,798 | INFO     | sum of deviations: 374116287594.99994
[2025-11-28 07:21:50] 2025-11-28 06:20:44,798 | INFO     | mean x: 1764303259.5
[2025-11-28 07:21:50] 2025-11-28 06:20:44,798 | INFO     | mean y: 3142409.10483871
[2025-11-28 07:21:50] 2025-11-28 06:20:44,798 | INFO     | intersect: -139554443212.7606
[2025-11-28 07:21:50] 2025-11-28 06:20:44,799 | INFO     | chi2: 3.413674805441044
[2025-11-28 07:21:50] 2025-11-28 06:20:44,799 | INFO     | current chi2=3.413674805441044 (change=0.10836593024912712 %)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,799 | INFO     | left removable region: 20
[2025-11-28 07:21:50] 2025-11-28 06:20:44,799 | INFO     | sum of square deviations: 3627000098.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | sum of deviations: 305678480552.00006
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | mean x: 1764303229.0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | mean y: 3138389.3480176213
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | intersect: -148689862906.9832
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | chi2: 1.4591122709673703
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | current memory leak: 84.28 B/s (using 227 data points, chi2=1.46)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | could have reported an average CPU frequency of 2885 MHz (12 samples)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | ..............................
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . Timing measurements:
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . get job = 0 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . initial setup = 1 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . payload setup = 2 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . stage-in = 0 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,800 | INFO     | . payload execution = 15724 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,801 | INFO     | . stage-out = 1 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,801 | INFO     | . log creation = 0 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,801 | INFO     | ..............................
[2025-11-28 07:21:50] 2025-11-28 06:20:44,850 | INFO     | 
[2025-11-28 07:21:50] 2025-11-28 06:20:44,850 | INFO     | job summary report
[2025-11-28 07:21:50] 2025-11-28 06:20:44,850 | INFO     | --------------------------------------------------
[2025-11-28 07:21:50] 2025-11-28 06:20:44,850 | INFO     | PanDA job id: 6895674846
[2025-11-28 07:21:50] 2025-11-28 06:20:44,850 | INFO     | task id: 47556149
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | errors: (none)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | pilot state: finished 
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | transexitcode: 0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | exeerrorcode: 0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | exeerrordiag: 
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | exitcode: 0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | exitmsg: OK
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | cpuconsumptiontime: 120372 s
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | nevents: 1000
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | neventsw: 0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | pid: 13823
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | pgrp: 13823
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | corecount: 8
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | event service: False
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | sizes: {0: 2284435, 2: 2284697, 11: 2284725, 15730: 2316972, 15731: 2316971, 15732: 2326235, 15734: 2326425}
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | --------------------------------------------------
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | 
[2025-11-28 07:21:50] 2025-11-28 06:20:44,851 | INFO     | executing command: ls -lF /tmp/job_10930668/atlas/pilot/slots/0
[2025-11-28 07:21:50] 2025-11-28 06:20:44,861 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,861 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,861 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,861 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | job 6895674846 has completed (purged errors)
[2025-11-28 07:21:50] 2025-11-28 06:20:44,862 | INFO     | overall cleanup function is called
[2025-11-28 07:21:50] 2025-11-28 06:20:45,090 | WARNING  | process 13823 can no longer be monitored (due to stat problems) - aborting
[2025-11-28 07:21:50] 2025-11-28 06:20:45,176 | INFO     | using path: /tmp/job_10930668/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:21:50] 2025-11-28 06:20:45,176 | INFO     | using path: /tmp/job_10930668/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:21:50] 2025-11-28 06:20:45,177 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-11-28 07:21:50] 2025-11-28 06:20:45,177 | WARNING  | maxPSS not found in memory monitor output
[2025-11-28 07:21:50] 2025-11-28 06:20:45,177 | INFO     | skipping file size check of payload stdout file (/tmp/job_10930668/atlas/pilot/slots/0/PanDA_Pilot-6895674846/payload.stdout) since it has not been created yet
[2025-11-28 07:21:50] 2025-11-28 06:20:45,177 | INFO     | executing command: df -mP /tmp/job_10930668/atlas/pilot/slots/0
[2025-11-28 07:21:50] 2025-11-28 06:20:45,184 | INFO     | sufficient remaining disk space (218788528128 B)
[2025-11-28 07:21:50] 2025-11-28 06:20:45,185 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-11-28 07:21:50] 2025-11-28 06:20:45,185 | INFO     | output file size check: skipping output file /tmp/job_10930668/atlas/pilot/slots/0/PanDA_Pilot-6895674846/HITS.47556149._003521.pool.root.1 since it does not exist
[2025-11-28 07:21:50] 2025-11-28 06:20:45,296 | INFO     | number of running child processes to parent process 13823: 1
[2025-11-28 07:21:50] 2025-11-28 06:20:45,296 | INFO     | maximum number of monitored processes: 16
[2025-11-28 07:21:50] 2025-11-28 06:20:45,296 | INFO     | aborting job monitoring since job object (job id=6895674846) has expired
[2025-11-28 07:21:50] 2025-11-28 06:20:45,870 | INFO     | --- collectZombieJob: --- 10, [13823]
[2025-11-28 07:21:50] 2025-11-28 06:20:45,870 | INFO     | zombie collector waiting for pid 13823
[2025-11-28 07:21:50] 2025-11-28 06:20:45,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:21:50] 2025-11-28 06:20:45,870 | INFO     | collected zombie processes
[2025-11-28 07:21:50] 2025-11-28 06:20:45,870 | INFO     | will attempt to kill all subprocesses of pid=13823
[2025-11-28 07:21:50] 2025-11-28 06:20:45,978 | INFO     | process IDs to be killed: [13823] (in reverse order)
[2025-11-28 07:21:50] 2025-11-28 06:20:46,019 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:21:50] 2025-11-28 06:20:46,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:21:50] 2025-11-28 06:20:46,024 | INFO     | did not find any defunct processes belonging to 13823
[2025-11-28 07:21:50] 2025-11-28 06:20:46,028 | INFO     | did not find any defunct processes belonging to 13823
[2025-11-28 07:21:50] 2025-11-28 06:20:46,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:21:50] 2025-11-28 06:20:46,028 | INFO     | ready for new job
[2025-11-28 07:21:50] 2025-11-28 06:20:46,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:21:50] 2025-11-28 06:20:46,029 | INFO     | ***************************************
[2025-11-28 07:21:50] 2025-11-28 06:20:46,029 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:21:50] 2025-11-28 06:20:46,029 | INFO     | ***************************************
[2025-11-28 07:21:50] 2025-11-28 06:20:46,029 | INFO     | 
[2025-11-28 07:21:50] 2025-11-28 06:20:46,043 | INFO     | architecture information:
[2025-11-28 07:21:50] 2025-11-28 06:20:46,043 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:21:50] 2025-11-28 06:20:46,050 | INFO     | cat /etc/os-release:
[2025-11-28 07:21:50] NAME="CentOS Linux"
[2025-11-28 07:21:50] VERSION="7 (Core)"
[2025-11-28 07:21:50] ID="centos"
[2025-11-28 07:21:50] ID_LIKE="rhel fedora"
[2025-11-28 07:21:50] VERSION_ID="7"
[2025-11-28 07:21:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:21:50] ANSI_COLOR="0;31"
[2025-11-28 07:21:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:21:50] HOME_URL="https://www.centos.org/"
[2025-11-28 07:21:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:21:50] 
[2025-11-28 07:21:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:21:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:21:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:21:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:21:50] 
[2025-11-28 07:21:50] 2025-11-28 06:20:46,050 | INFO     | ***************************************
[2025-11-28 07:21:50] 2025-11-28 06:20:46,552 | INFO     | executing command: df -mP /tmp/job_10930668/atlas/pilot/slots/0
[2025-11-28 07:21:50] 2025-11-28 06:20:46,559 | INFO     | sufficient remaining disk space (218788528128 B)
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | INFO     | update_server=False
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:21:50] 2025-11-28 06:20:46,560 | INFO     | aborting loop
[2025-11-28 07:21:50] 2025-11-28 06:20:46,657 | INFO     | all data control threads have been joined
[2025-11-28 07:21:50] 2025-11-28 06:20:47,564 | INFO     | all job control threads have been joined
[2025-11-28 07:21:50] 2025-11-28 06:20:47,565 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:47,565 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:47,566 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:47,597 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:47,663 | INFO     | [data] control thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:47,745 | INFO     | all payload control threads have been joined
[2025-11-28 07:21:50] 2025-11-28 06:20:47,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:21:50] 2025-11-28 06:20:48,291 | INFO     | [job] validate thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,412 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,432 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,496 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,532 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,570 | INFO     | [job] control thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:21:50] 2025-11-28 06:20:48,664 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:48,750 | INFO     | [payload] control thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:49,867 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:52,623 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:20:56,697 | INFO     | job.realtimelogging is not enabled
[2025-11-28 07:21:50] 2025-11-28 06:20:57,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:21:50] 2025-11-28 06:21:17,383 | INFO     | PID=5229 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 07:21:50] 2025-11-28 06:21:17,383 | INFO     | .. there are 6 such processes running
[2025-11-28 07:21:50] 2025-11-28 06:21:17,383 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:21:50] 2025-11-28 06:21:17,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:21:50] 2025-11-28 06:21:17,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:21:50] 2025-11-28 06:21:43,262 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:21:50] 2025-11-28 06:21:45,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-11-28 07:21:50] 2025-11-28 06:21:45,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:21:50] 2025-11-28 06:21:45,521 | INFO     | [monitor] control thread has ended
[2025-11-28 07:21:50] 2025-11-28 06:21:50,287 | INFO     | all workflow threads have been joined
[2025-11-28 07:21:50] 2025-11-28 06:21:50,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:21:50] 2025-11-28 06:21:50,288 | INFO     | traces error code: 0
[2025-11-28 07:21:50] 2025-11-28 06:21:50,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:21:50] 2025-11-28 06:21:50,346 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:21:50] 2025-11-28 06:21:50,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:21:50] 2025-11-28 06:21:50,347 [wrapper] pilotpid: 5229
[2025-11-28 07:21:50] 2025-11-28 06:21:50,349 [wrapper] Pilot exit status: 0
[2025-11-28 07:21:50] 2025-11-28 06:21:50,354 [wrapper] pandaids: 6895674846
[2025-11-28 07:21:50] 2025-11-28 06:21:50,378 [wrapper] cleanup supervisor_pilot 11493 5230
[2025-11-28 07:21:50] 2025-11-28 06:21:50,379 [wrapper] Test setup, not cleaning
[2025-11-28 07:21:50] 2025-11-28 06:21:50,380 [wrapper] apfmon messages muted
[2025-11-28 07:21:50] 2025-11-28 06:21:50,381 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:21:50] 2025-11-28 06:21:50,382 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:21:50]  *** Error codes and diagnostics ***
[2025-11-28 07:21:50]     "exeErrorCode": 0,
[2025-11-28 07:21:50]     "exeErrorDiag": "",
[2025-11-28 07:21:50]     "pilotErrorCode": 0,
[2025-11-28 07:21:50]     "pilotErrorDiag": "",
[2025-11-28 07:21:50]  *** Listing of results directory ***
[2025-11-28 07:21:50] total 1304140
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      5112 Nov 24 16:23 queuedata.json
[2025-11-28 07:21:50] -rwx------ 1 mf493845 unix-user     36292 Nov 24 16:23 runpilot2-wrapper.sh
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user       100 Nov 28 01:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:21:50] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 28 01:14 run_atlas
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user       105 Nov 28 01:14 job.xml
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user 408116843 Nov 28 02:58 EVNT.47483658._001366.pool.root.1
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 28 02:58 start_atlas.sh
[2025-11-28 07:21:50] drwxrwx--x 2 mf493845 unix-user       100 Nov 28 02:58 shared
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user    590103 Nov 28 02:58 input.tar.gz
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      6391 Nov 28 02:58 init_data.xml
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user         0 Nov 28 02:58 boinc_setup_complete
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      8192 Nov 28 02:58 boinc_mmap_file
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user         0 Nov 28 02:58 boinc_lockfile
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      2783 Nov 28 02:58 pandaJob.out
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user    991866 Nov 28 02:58 agis_schedconf.cvmfs.json
[2025-11-28 07:21:50] drwx------ 5 mf493845 unix-user       440 Nov 28 02:58 pilot3
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user 915810022 Nov 28 07:20 HITS.47556149._003521.pool.root.1
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user        95 Nov 28 07:20 pilot_heartbeat.json
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      1024 Nov 28 07:20 memory_monitor_summary.json
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user   1516240 Nov 28 07:20 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user   1555031 Nov 28 07:20 log.47556149._003521.job.log.tgz.1
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      8593 Nov 28 07:20 heartbeat.json
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      4906 Nov 28 07:21 pilotlog.txt
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user   2259262 Nov 28 07:21 log.47556149._003521.job.log.1
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user       353 Nov 28 07:21 output.list
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user       620 Nov 28 07:21 runtime_log
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user   3829760 Nov 28 07:21 result.tar.gz
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user       650 Nov 28 07:21 zWOKDmvanh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMjLKDmzBwLEo.diag
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user      9221 Nov 28 07:21 runtime_log.err
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user     22108 Nov 28 07:21 stderr.txt
[2025-11-28 07:21:50] HITS file was successfully produced:
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user 915810022 Nov 28 07:20 shared/HITS.pool.root.1
[2025-11-28 07:21:50]  *** Contents of shared directory: ***
[2025-11-28 07:21:50] total 1297236
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user 408116843 Nov 28 02:58 ATLAS.root_0
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 28 02:58 start_atlas.sh
[2025-11-28 07:21:50] -rw-r--r-- 2 mf493845 unix-user    590103 Nov 28 02:58 input.tar.gz
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user 915810022 Nov 28 07:20 HITS.pool.root.1
[2025-11-28 07:21:50] -rw------- 1 mf493845 unix-user   3829760 Nov 28 07:21 result.tar.gz
07:21:51 (30518): run_atlas exited; CPU time 120552.259791
07:21:51 (30518): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN