Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:46:30 (12758): wrapper (7.7.26015): starting
02:46:30 (12758): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 02:46:30] Arguments: --nthreads 8
[2025-11-28 02:46:30] Threads: 8
[2025-11-28 02:46:30] Checking for CVMFS
[2025-11-28 02:46:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 02:46:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 02:46:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 02:46:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 02:46:30] 2.11.0.0 3942 68179 81572 153392 1 1 3968067 4096001 0 130560 3 3217095 98.993 6645580 657 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-28 02:46:30] CVMFS is ok
[2025-11-28 02:46:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 02:46:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 02:46:30] Further information can be found at the LHC@home message board.
[2025-11-28 02:46:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 02:46:30] Checking for apptainer binary...
[2025-11-28 02:46:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-28 02:46:30] apptainer is not installed, using version from CVMFS
[2025-11-28 02:46:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 02:46:30] WARNING: Environment variable TMPDIR already has value [/tmp/job_10930606/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node259
[2025-11-28 02:46:30] apptainer works
[2025-11-28 02:46:30] Set ATHENA_PROC_NUMBER=8
[2025-11-28 02:46:30] Set ATHENA_CORE_NUMBER=8
[2025-11-28 02:46:30] Starting ATLAS job with PandaID=6891104835
[2025-11-28 02:46:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10930606/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:08:08]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | INFO     | using path: /tmp/job_10930606/atlas/pilot/slots/0/PanDA_Pilot-6891104835/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | WARNING  | maxPSS not found in memory monitor output
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 213103 B
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3857290 B
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13747 B
[2025-11-28 07:08:08] 2025-11-28 06:07:07,538 | INFO     | executing command: df -mP /tmp/job_10930606/atlas/pilot/slots/0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,293 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:08:08] 2025-11-28 06:07:08,300 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2754.6150000000002
[2025-11-28 07:08:08] 2025-11-28 06:07:08,301 | INFO     | sufficient remaining disk space (216966103040 B)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,301 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,304 | INFO     | size of work directory /tmp/job_10930606/atlas/pilot/slots/0/PanDA_Pilot-6891104835: 8141487 B (within 2537553920 B limit)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,304 | INFO     | pfn file=/tmp/job_10930606/atlas/pilot/slots/0/PanDA_Pilot-6891104835/HITS.47483661._002012.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,304 | INFO     | total size of present files: 0 B (workdir size: 8141487 B)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,305 | INFO     | output file size check: skipping output file /tmp/job_10930606/atlas/pilot/slots/0/PanDA_Pilot-6891104835/HITS.47483661._002012.pool.root.1 since it does not exist
[2025-11-28 07:08:08] 2025-11-28 06:07:08,307 | INFO     | using path: /tmp/job_10930606/atlas/pilot/slots/0/PanDA_Pilot-6891104835/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,307 | INFO     | extracted standard info from prmon json
[2025-11-28 07:08:08] 2025-11-28 06:07:08,307 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:08:08] 2025-11-28 06:07:08,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:08:08] 2025-11-28 06:07:08,310 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:08:08] 2025-11-28 06:07:08,310 | INFO     | sum of square deviations: 5202255680.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,311 | INFO     | sum of deviations: 1915587983120.5
[2025-11-28 07:08:08] 2025-11-28 06:07:08,311 | INFO     | mean x: 1764302191.5
[2025-11-28 07:08:08] 2025-11-28 06:07:08,311 | INFO     | mean y: 4757069.73828125
[2025-11-28 07:08:08] 2025-11-28 06:07:08,311 | INFO     | intersect: -649651139241.487
[2025-11-28 07:08:08] 2025-11-28 06:07:08,311 | INFO     | chi2: 5.739255572653088
[2025-11-28 07:08:08] 2025-11-28 06:07:08,312 | INFO     | sum of square deviations: 4903347750.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,312 | INFO     | sum of deviations: 1946882979071.0002
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | mean x: 1764302039.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | mean y: 4772429.66932271
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | intersect: -700514502318.7635
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | chi2: 4.563170295342312
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | current chi2=4.563170295342312 (change=20.491948170328758 %)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | right removable region: 250
[2025-11-28 07:08:08] 2025-11-28 06:07:08,313 | INFO     | sum of square deviations: 4903347750.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | sum of deviations: 1795908649643.9998
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | mean x: 1764302344.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | mean y: 4817944.274900398
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | intersect: -646191617986.0104
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | chi2: 4.3946287724399316
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | current chi2=4.3946287724399316 (change=23.42859249238094 %)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | left removable region: 10
[2025-11-28 07:08:08] 2025-11-28 06:07:08,314 | INFO     | sum of square deviations: 4286517580.0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,315 | INFO     | sum of deviations: 1728358121639.0002
[2025-11-28 07:08:08] 2025-11-28 06:07:08,315 | INFO     | mean x: 1764302313.5
[2025-11-28 07:08:08] 2025-11-28 06:07:08,315 | INFO     | mean y: 4871565.816666666
[2025-11-28 07:08:08] 2025-11-28 06:07:08,315 | INFO     | intersect: -711375911471.635
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | chi2: 2.733310915397764
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | current memory leak: 403.21 B/s (using 240 data points, chi2=2.73)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | could have reported an average CPU frequency of 2892 MHz (12 samples)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | ..............................
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . Timing measurements:
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . get job = 0 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . initial setup = 1 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . payload setup = 2 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . stage-in = 0 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . payload execution = 15610 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . stage-out = 1 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | . log creation = 0 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,316 | INFO     | ..............................
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | 
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | job summary report
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | --------------------------------------------------
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | PanDA job id: 6891104835
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | task id: 47483661
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | errors: (none)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | pilot state: finished 
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | transexitcode: 0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | exeerrorcode: 0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | exeerrordiag: 
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | exitcode: 0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | exitmsg: OK
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | cpuconsumptiontime: 120543 s
[2025-11-28 07:08:08] 2025-11-28 06:07:08,367 | INFO     | nevents: 1000
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | neventsw: 0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | pid: 25662
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | pgrp: 25662
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | corecount: 8
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | event service: False
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | sizes: {0: 2284430, 2: 2284692, 11: 2284720, 15616: 2316902, 15618: 2325982, 15620: 2326200}
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | --------------------------------------------------
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | 
[2025-11-28 07:08:08] 2025-11-28 06:07:08,368 | INFO     | executing command: ls -lF /tmp/job_10930606/atlas/pilot/slots/0
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | job 6891104835 has completed (purged errors)
[2025-11-28 07:08:08] 2025-11-28 06:07:08,378 | INFO     | overall cleanup function is called
[2025-11-28 07:08:08] 2025-11-28 06:07:08,480 | INFO     | number of running child processes to parent process 25662: 1
[2025-11-28 07:08:08] 2025-11-28 06:07:08,480 | INFO     | maximum number of monitored processes: 16
[2025-11-28 07:08:08] 2025-11-28 06:07:08,480 | INFO     | aborting job monitoring since job object (job id=6891104835) has expired
[2025-11-28 07:08:08] 2025-11-28 06:07:09,388 | INFO     | --- collectZombieJob: --- 10, [25662]
[2025-11-28 07:08:08] 2025-11-28 06:07:09,388 | INFO     | zombie collector waiting for pid 25662
[2025-11-28 07:08:08] 2025-11-28 06:07:09,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:08:08] 2025-11-28 06:07:09,388 | INFO     | collected zombie processes
[2025-11-28 07:08:08] 2025-11-28 06:07:09,388 | INFO     | will attempt to kill all subprocesses of pid=25662
[2025-11-28 07:08:08] 2025-11-28 06:07:09,495 | INFO     | process IDs to be killed: [25662] (in reverse order)
[2025-11-28 07:08:08] 2025-11-28 06:07:09,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:08:08] 2025-11-28 06:07:09,534 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:08:08] 2025-11-28 06:07:09,539 | INFO     | did not find any defunct processes belonging to 25662
[2025-11-28 07:08:08] 2025-11-28 06:07:09,542 | INFO     | did not find any defunct processes belonging to 25662
[2025-11-28 07:08:08] 2025-11-28 06:07:09,542 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:08:08] 2025-11-28 06:07:09,542 | INFO     | ready for new job
[2025-11-28 07:08:08] 2025-11-28 06:07:09,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:08:08] 2025-11-28 06:07:09,544 | INFO     | ***************************************
[2025-11-28 07:08:08] 2025-11-28 06:07:09,544 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:08:08] 2025-11-28 06:07:09,544 | INFO     | ***************************************
[2025-11-28 07:08:08] 2025-11-28 06:07:09,544 | INFO     | 
[2025-11-28 07:08:08] 2025-11-28 06:07:09,558 | INFO     | architecture information:
[2025-11-28 07:08:08] 2025-11-28 06:07:09,558 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:08:08] 2025-11-28 06:07:09,565 | INFO     | cat /etc/os-release:
[2025-11-28 07:08:08] NAME="CentOS Linux"
[2025-11-28 07:08:08] VERSION="7 (Core)"
[2025-11-28 07:08:08] ID="centos"
[2025-11-28 07:08:08] ID_LIKE="rhel fedora"
[2025-11-28 07:08:08] VERSION_ID="7"
[2025-11-28 07:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:08:08] ANSI_COLOR="0;31"
[2025-11-28 07:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:08:08] HOME_URL="https://www.centos.org/"
[2025-11-28 07:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:08:08] 
[2025-11-28 07:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:08:08] 
[2025-11-28 07:08:08] 2025-11-28 06:07:09,565 | INFO     | ***************************************
[2025-11-28 07:08:08] 2025-11-28 06:07:10,068 | INFO     | executing command: df -mP /tmp/job_10930606/atlas/pilot/slots/0
[2025-11-28 07:08:08] 2025-11-28 06:07:10,074 | INFO     | sufficient remaining disk space (216977637376 B)
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | INFO     | update_server=False
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:08:08] 2025-11-28 06:07:10,075 | INFO     | aborting loop
[2025-11-28 07:08:08] 2025-11-28 06:07:10,330 | INFO     | all data control threads have been joined
[2025-11-28 07:08:08] 2025-11-28 06:07:10,446 | INFO     | all job control threads have been joined
[2025-11-28 07:08:08] 2025-11-28 06:07:10,730 | INFO     | job.realtimelogging is not enabled
[2025-11-28 07:08:08] 2025-11-28 06:07:11,080 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,081 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,081 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,321 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,335 | INFO     | [data] control thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,349 | INFO     | all payload control threads have been joined
[2025-11-28 07:08:08] 2025-11-28 06:07:11,452 | INFO     | [job] control thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:11,920 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,080 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,100 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:08:08] 2025-11-28 06:07:12,354 | INFO     | [payload] control thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,367 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,367 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,388 | INFO     | [job] validate thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:12,644 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:16,227 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:08:08] 2025-11-28 06:07:39,918 | INFO     | PID=17458 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 07:08:08] 2025-11-28 06:07:39,918 | INFO     | .. there are 6 such processes running
[2025-11-28 07:08:08] 2025-11-28 06:07:39,918 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:08:08] 2025-11-28 06:07:39,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:08:08] 2025-11-28 06:07:39,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:08:08] 2025-11-28 06:08:01,890 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:08:08] 2025-11-28 06:08:03,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-28 07:08:08] 2025-11-28 06:08:04,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:08:08] 2025-11-28 06:08:04,033 | INFO     | [monitor] control thread has ended
[2025-11-28 07:08:08] 2025-11-28 06:08:08,484 | INFO     | all workflow threads have been joined
[2025-11-28 07:08:08] 2025-11-28 06:08:08,484 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:08:08] 2025-11-28 06:08:08,484 | INFO     | traces error code: 0
[2025-11-28 07:08:08] 2025-11-28 06:08:08,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:08:08] 2025-11-28 06:08:08,536 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:08:08] 2025-11-28 06:08:08,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:08:08] 2025-11-28 06:08:08,539 [wrapper] pilotpid: 17458
[2025-11-28 07:08:08] 2025-11-28 06:08:08,540 [wrapper] Pilot exit status: 0
[2025-11-28 07:08:08] 2025-11-28 06:08:08,544 [wrapper] pandaids: 6891104835
[2025-11-28 07:08:08] 2025-11-28 06:08:08,571 [wrapper] cleanup supervisor_pilot 15015 17459
[2025-11-28 07:08:08] 2025-11-28 06:08:08,572 [wrapper] Test setup, not cleaning
[2025-11-28 07:08:08] 2025-11-28 06:08:08,573 [wrapper] apfmon messages muted
[2025-11-28 07:08:08] 2025-11-28 06:08:08,574 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:08:08] 2025-11-28 06:08:08,576 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:08:08]  *** Error codes and diagnostics ***
[2025-11-28 07:08:08]     "exeErrorCode": 0,
[2025-11-28 07:08:08]     "exeErrorDiag": "",
[2025-11-28 07:08:08]     "pilotErrorCode": 0,
[2025-11-28 07:08:08]     "pilotErrorDiag": "",
[2025-11-28 07:08:08]  *** Listing of results directory ***
[2025-11-28 07:08:08] total 1317632
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      5112 Nov 18 07:58 queuedata.json
[2025-11-28 07:08:08] -rwx------ 1 mf493845 unix-user     36292 Nov 18 07:59 runpilot2-wrapper.sh
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user       100 Nov 28 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:08:08] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 28 01:02 run_atlas
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user       105 Nov 28 01:02 job.xml
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 28 02:46 start_atlas.sh
[2025-11-28 07:08:08] drwxrwx--x 2 mf493845 unix-user       100 Nov 28 02:46 shared
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 28 02:46 input.tar.gz
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      6390 Nov 28 02:46 init_data.xml
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user 409785293 Nov 28 02:46 EVNT.47483658._000232.pool.root.1
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user         0 Nov 28 02:46 boinc_setup_complete
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      8192 Nov 28 02:46 boinc_mmap_file
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user         0 Nov 28 02:46 boinc_lockfile
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      2773 Nov 28 02:46 pandaJob.out
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user    991866 Nov 28 02:46 agis_schedconf.cvmfs.json
[2025-11-28 07:08:08] drwx------ 5 mf493845 unix-user       440 Nov 28 02:46 pilot3
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user 928011870 Nov 28 07:06 HITS.47483661._002012.pool.root.1
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user        95 Nov 28 07:06 pilot_heartbeat.json
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      1023 Nov 28 07:07 memory_monitor_summary.json
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user   1516240 Nov 28 07:07 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user   1552949 Nov 28 07:07 log.47483661._002012.job.log.tgz.1
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      8589 Nov 28 07:07 heartbeat.json
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      4907 Nov 28 07:08 pilotlog.txt
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user   2229095 Nov 28 07:08 log.47483661._002012.job.log.1
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user       353 Nov 28 07:08 output.list
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user       620 Nov 28 07:08 runtime_log
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user   3799040 Nov 28 07:08 result.tar.gz
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user      9077 Nov 28 07:08 runtime_log.err
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user       651 Nov 28 07:08 LvPKDmJrUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwNKODmxVmxgn.diag
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user     22418 Nov 28 07:08 stderr.txt
[2025-11-28 07:08:08] HITS file was successfully produced:
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user 928011870 Nov 28 07:06 shared/HITS.pool.root.1
[2025-11-28 07:08:08]  *** Contents of shared directory: ***
[2025-11-28 07:08:08] total 1310756
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 28 02:46 start_atlas.sh
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 28 02:46 input.tar.gz
[2025-11-28 07:08:08] -rw-r--r-- 2 mf493845 unix-user 409785293 Nov 28 02:46 ATLAS.root_0
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user 928011870 Nov 28 07:06 HITS.pool.root.1
[2025-11-28 07:08:08] -rw------- 1 mf493845 unix-user   3799040 Nov 28 07:08 result.tar.gz
07:08:10 (12758): run_atlas exited; CPU time 120715.992706
07:08:10 (12758): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN