Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:01:57 (8674): wrapper (7.7.26015): starting
03:01:57 (8674): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 03:01:57] Arguments: --nthreads 8
[2025-11-28 03:01:57] Threads: 8
[2025-11-28 03:01:57] Checking for CVMFS
[2025-11-28 03:01:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 03:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 03:01:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 03:01:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 03:01:58] 2.11.0.0 24859 67937 82216 153392 0 1 2538063 4096000 0 130560 3 5108067 99.763 3080221 359 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-28 03:01:58] CVMFS is ok
[2025-11-28 03:01:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 03:01:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 03:01:58] Further information can be found at the LHC@home message board.
[2025-11-28 03:01:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 03:01:58] Checking for apptainer binary...
[2025-11-28 03:01:58] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-28 03:01:58] apptainer is not installed, using version from CVMFS
[2025-11-28 03:01:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 03:01:58] WARNING: Environment variable TMPDIR already has value [/tmp/job_10930675/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node313
[2025-11-28 03:01:58] apptainer works
[2025-11-28 03:01:58] Set ATHENA_PROC_NUMBER=8
[2025-11-28 03:01:58] Set ATHENA_CORE_NUMBER=8
[2025-11-28 03:01:58] Starting ATLAS job with PandaID=6891575458
[2025-11-28 03:01:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10930675/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:28:37]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:28:37] 2025-11-28 06:27:37,012 | INFO     | log transfer has been attempted: DONE
[2025-11-28 07:28:37] 2025-11-28 06:27:37,012 | INFO     | job 6891575458 has finished - writing final server update
[2025-11-28 07:28:37] 2025-11-28 06:27:37,012 | INFO     | total number of processed events: 1000 (read)
[2025-11-28 07:28:37] 2025-11-28 06:27:37,013 | INFO     | executing command: lscpu
[2025-11-28 07:28:37] 2025-11-28 06:27:37,037 | INFO     | PID=12728 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 07:28:37] 2025-11-28 06:27:37,037 | INFO     | .. there are 5 such processes running
[2025-11-28 07:28:37] 2025-11-28 06:27:37,042 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-28 07:28:37] 2025-11-28 06:27:38,038 | INFO     | time since job start (15932s) is within the limit (172800.0s)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,786 | INFO     | monitor loop #1161: job 0:6891575458 is in state 'finished'
[2025-11-28 07:28:37] 2025-11-28 06:27:38,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,801 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:28:37] 2025-11-28 06:27:38,805 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2598.880078125
[2025-11-28 07:28:37] 2025-11-28 06:27:38,810 | INFO     | using path: /tmp/job_10930675/atlas/pilot/slots/0/PanDA_Pilot-6891575458/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,811 | INFO     | extracted standard info from prmon json
[2025-11-28 07:28:37] 2025-11-28 06:27:38,811 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:28:37] 2025-11-28 06:27:38,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:28:37] 2025-11-28 06:27:38,813 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:28:37] 2025-11-28 06:27:38,813 | INFO     | sum of square deviations: 5513070810.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,814 | INFO     | sum of deviations: 2004570635029.0002
[2025-11-28 07:28:37] 2025-11-28 06:27:38,814 | INFO     | mean x: 1764303275.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,814 | INFO     | mean y: 4824737.398467433
[2025-11-28 07:28:37] 2025-11-28 06:27:38,814 | INFO     | intersect: -641501634772.5049
[2025-11-28 07:28:37] 2025-11-28 06:27:38,815 | INFO     | chi2: 5.621068757506393
[2025-11-28 07:28:37] 2025-11-28 06:27:38,815 | INFO     | sum of square deviations: 5202255680.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | sum of deviations: 2046423363085.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | mean x: 1764303122.5
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | mean y: 4844702.828125
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | intersect: -694023159981.4431
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | chi2: 4.1900985170951435
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | current chi2=4.1900985170951435 (change=25.457262704718335 %)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,816 | INFO     | sum of square deviations: 4903347750.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | sum of deviations: 1954936787904.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | mean x: 1764302970.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | mean y: 4798020.342629482
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | intersect: -703412735655.764
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | chi2: 4.321294448665207
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | current chi2=4.321294448665207 (change=-3.1310941982580753 %)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,817 | INFO     | right removable region: 250
[2025-11-28 07:28:37] 2025-11-28 06:27:38,818 | INFO     | sum of square deviations: 5202255680.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,818 | INFO     | sum of deviations: 1879374982736.5
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | mean x: 1764303427.5
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | mean y: 4885987.94921875
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | intersect: -637370115849.6691
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | chi2: 4.325768387421115
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | current chi2=4.325768387421115 (change=23.04366706697067 %)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | left removable region: 10
[2025-11-28 07:28:37] 2025-11-28 06:27:38,819 | INFO     | sum of square deviations: 4286517580.0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | sum of deviations: 1734456862141.5002
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | mean x: 1764303244.5
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | mean y: 4898287.5125
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | intersect: -713886462755.6255
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | chi2: 2.502429178740453
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | current memory leak: 404.63 B/s (using 240 data points, chi2=2.50)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | could have reported an average CPU frequency of 2850 MHz (12 samples)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | ..............................
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | . Timing measurements:
[2025-11-28 07:28:37] 2025-11-28 06:27:38,820 | INFO     | . get job = 0 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . initial setup = 1 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . payload setup = 2 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . stage-in = 0 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . payload execution = 15908 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . stage-out = 1 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | . log creation = 0 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,821 | INFO     | ..............................
[2025-11-28 07:28:37] 2025-11-28 06:27:38,952 | INFO     | 
[2025-11-28 07:28:37] 2025-11-28 06:27:38,952 | INFO     | job summary report
[2025-11-28 07:28:37] 2025-11-28 06:27:38,952 | INFO     | --------------------------------------------------
[2025-11-28 07:28:37] 2025-11-28 06:27:38,952 | INFO     | PanDA job id: 6891575458
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | task id: 47493068
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | errors: (none)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | pilot state: finished 
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | transexitcode: 0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | exeerrorcode: 0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | exeerrordiag: 
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | exitcode: 0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | exitmsg: OK
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | cpuconsumptiontime: 122065 s
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | nevents: 1000
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | neventsw: 0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | pid: 19306
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | pgrp: 19306
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | corecount: 8
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | event service: False
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | sizes: {0: 2284379, 2: 2284641, 11: 2284669, 15915: 2316935, 15917: 2325959, 15918: 2326015, 15920: 2326389}
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | --------------------------------------------------
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | 
[2025-11-28 07:28:37] 2025-11-28 06:27:38,953 | INFO     | executing command: ls -lF /tmp/job_10930675/atlas/pilot/slots/0
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,963 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | job 6891575458 has completed (purged errors)
[2025-11-28 07:28:37] 2025-11-28 06:27:38,964 | INFO     | overall cleanup function is called
[2025-11-28 07:28:37] 2025-11-28 06:27:39,971 | INFO     | --- collectZombieJob: --- 10, [19306]
[2025-11-28 07:28:37] 2025-11-28 06:27:39,971 | INFO     | zombie collector waiting for pid 19306
[2025-11-28 07:28:37] 2025-11-28 06:27:39,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:28:37] 2025-11-28 06:27:39,971 | INFO     | collected zombie processes
[2025-11-28 07:28:37] 2025-11-28 06:27:39,971 | INFO     | will attempt to kill all subprocesses of pid=19306
[2025-11-28 07:28:37] 2025-11-28 06:27:40,073 | INFO     | process IDs to be killed: [19306] (in reverse order)
[2025-11-28 07:28:37] 2025-11-28 06:27:40,108 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:28:37] 2025-11-28 06:27:40,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:28:37] 2025-11-28 06:27:40,112 | INFO     | did not find any defunct processes belonging to 19306
[2025-11-28 07:28:37] 2025-11-28 06:27:40,115 | INFO     | did not find any defunct processes belonging to 19306
[2025-11-28 07:28:37] 2025-11-28 06:27:40,116 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:28:37] 2025-11-28 06:27:40,116 | INFO     | ready for new job
[2025-11-28 07:28:37] 2025-11-28 06:27:40,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:28:37] 2025-11-28 06:27:40,117 | INFO     | ***************************************
[2025-11-28 07:28:37] 2025-11-28 06:27:40,117 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:28:37] 2025-11-28 06:27:40,117 | INFO     | ***************************************
[2025-11-28 07:28:37] 2025-11-28 06:27:40,117 | INFO     | 
[2025-11-28 07:28:37] 2025-11-28 06:27:40,131 | INFO     | architecture information:
[2025-11-28 07:28:37] 2025-11-28 06:27:40,131 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:28:37] 2025-11-28 06:27:40,137 | INFO     | cat /etc/os-release:
[2025-11-28 07:28:37] NAME="CentOS Linux"
[2025-11-28 07:28:37] VERSION="7 (Core)"
[2025-11-28 07:28:37] ID="centos"
[2025-11-28 07:28:37] ID_LIKE="rhel fedora"
[2025-11-28 07:28:37] VERSION_ID="7"
[2025-11-28 07:28:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:28:37] ANSI_COLOR="0;31"
[2025-11-28 07:28:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:28:37] HOME_URL="https://www.centos.org/"
[2025-11-28 07:28:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:28:37] 
[2025-11-28 07:28:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:28:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:28:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:28:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:28:37] 
[2025-11-28 07:28:37] 2025-11-28 06:27:40,137 | INFO     | ***************************************
[2025-11-28 07:28:37] 2025-11-28 06:27:40,640 | INFO     | executing command: df -mP /tmp/job_10930675/atlas/pilot/slots/0
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | INFO     | sufficient remaining disk space (219399847936 B)
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | INFO     | update_server=False
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:28:37] 2025-11-28 06:27:40,646 | INFO     | aborting loop
[2025-11-28 07:28:37] 2025-11-28 06:27:40,964 | INFO     | all data control threads have been joined
[2025-11-28 07:28:37] 2025-11-28 06:27:41,079 | INFO     | all job control threads have been joined
[2025-11-28 07:28:37] 2025-11-28 06:27:41,174 | INFO     | all payload control threads have been joined
[2025-11-28 07:28:37] 2025-11-28 06:27:41,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:28:37] 2025-11-28 06:27:41,651 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:41,651 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:41,652 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:41,729 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:41,969 | INFO     | [data] control thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:41,989 | INFO     | [job] validate thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,082 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,084 | INFO     | [job] control thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,179 | INFO     | [payload] control thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,266 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,419 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,501 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:42,882 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:43,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:28:37] 2025-11-28 06:27:43,056 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:43,263 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:27:47,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:28:37] 2025-11-28 06:28:11,228 | INFO     | PID=12728 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 07:28:37] 2025-11-28 06:28:11,228 | INFO     | .. there are 5 such processes running
[2025-11-28 07:28:37] 2025-11-28 06:28:11,228 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:28:37] 2025-11-28 06:28:11,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:28:37] 2025-11-28 06:28:11,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:28:37] 2025-11-28 06:28:32,571 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:28:37] 2025-11-28 06:28:32,681 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-11-28 07:28:37] 2025-11-28 06:28:33,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:28:37] 2025-11-28 06:28:33,339 | INFO     | [monitor] control thread has ended
[2025-11-28 07:28:37] 2025-11-28 06:28:37,706 | INFO     | all workflow threads have been joined
[2025-11-28 07:28:37] 2025-11-28 06:28:37,706 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:28:37] 2025-11-28 06:28:37,706 | INFO     | traces error code: 0
[2025-11-28 07:28:37] 2025-11-28 06:28:37,706 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:28:37] 2025-11-28 06:28:37,758 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:28:37] 2025-11-28 06:28:37,759 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:28:37] 2025-11-28 06:28:37,760 [wrapper] pilotpid: 12728
[2025-11-28 07:28:37] 2025-11-28 06:28:37,761 [wrapper] Pilot exit status: 0
[2025-11-28 07:28:37] 2025-11-28 06:28:37,765 [wrapper] pandaids: 6891575458
[2025-11-28 07:28:37] 2025-11-28 06:28:37,789 [wrapper] cleanup supervisor_pilot 16552 12729
[2025-11-28 07:28:37] 2025-11-28 06:28:37,791 [wrapper] Test setup, not cleaning
[2025-11-28 07:28:37] 2025-11-28 06:28:37,792 [wrapper] apfmon messages muted
[2025-11-28 07:28:37] 2025-11-28 06:28:37,792 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:28:37] 2025-11-28 06:28:37,793 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:28:37]  *** Error codes and diagnostics ***
[2025-11-28 07:28:37]     "exeErrorCode": 0,
[2025-11-28 07:28:37]     "exeErrorDiag": "",
[2025-11-28 07:28:37]     "pilotErrorCode": 0,
[2025-11-28 07:28:37]     "pilotErrorDiag": "",
[2025-11-28 07:28:37]  *** Listing of results directory ***
[2025-11-28 07:28:37] total 1306444
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      5112 Nov 18 17:30 queuedata.json
[2025-11-28 07:28:37] -rwx------ 1 mf493845 unix-user     36292 Nov 18 17:32 runpilot2-wrapper.sh
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user       100 Nov 28 01:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:28:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 28 01:18 run_atlas
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user       105 Nov 28 01:18 job.xml
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 28 03:01 start_atlas.sh
[2025-11-28 07:28:37] drwxrwx--x 2 mf493845 unix-user       100 Nov 28 03:01 shared
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user    590104 Nov 28 03:01 input.tar.gz
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      6391 Nov 28 03:01 init_data.xml
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user 408304659 Nov 28 03:01 EVNT.47493065._000364.pool.root.1
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user         0 Nov 28 03:01 boinc_setup_complete
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      8192 Nov 28 03:01 boinc_mmap_file
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user         0 Nov 28 03:01 boinc_lockfile
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      2772 Nov 28 03:01 pandaJob.out
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user    991866 Nov 28 03:02 agis_schedconf.cvmfs.json
[2025-11-28 07:28:37] drwx------ 5 mf493845 unix-user       440 Nov 28 03:02 pilot3
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user 917924862 Nov 28 07:27 HITS.47493068._003635.pool.root.1
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      1025 Nov 28 07:27 memory_monitor_summary.json
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user   1516240 Nov 28 07:27 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user   1556106 Nov 28 07:27 log.47493068._003635.job.log.tgz.1
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      8575 Nov 28 07:27 heartbeat.json
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user        95 Nov 28 07:28 pilot_heartbeat.json
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      4835 Nov 28 07:28 pilotlog.txt
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user   2283645 Nov 28 07:28 log.47493068._003635.job.log.1
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user       353 Nov 28 07:28 output.list
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user       620 Nov 28 07:28 runtime_log
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user   3860480 Nov 28 07:28 result.tar.gz
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user      9077 Nov 28 07:28 runtime_log.err
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user       651 Nov 28 07:28 GkIODmSodf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZTFKDmMyfOsm.diag
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user     21981 Nov 28 07:28 stderr.txt
[2025-11-28 07:28:37] HITS file was successfully produced:
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user 917924862 Nov 28 07:27 shared/HITS.pool.root.1
[2025-11-28 07:28:37]  *** Contents of shared directory: ***
[2025-11-28 07:28:37] total 1299516
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 28 03:01 start_atlas.sh
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user    590104 Nov 28 03:01 input.tar.gz
[2025-11-28 07:28:37] -rw-r--r-- 2 mf493845 unix-user 408304659 Nov 28 03:01 ATLAS.root_0
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user 917924862 Nov 28 07:27 HITS.pool.root.1
[2025-11-28 07:28:37] -rw------- 1 mf493845 unix-user   3860480 Nov 28 07:28 result.tar.gz
07:28:39 (8674): run_atlas exited; CPU time 122262.175985
07:28:39 (8674): called boinc_finish(0)

</stderr_txt>
]]>

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