Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:56:34 (793805): wrapper (7.7.26015): starting
13:56:34 (793805): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 13:56:34] Arguments: --nthreads 8
[2025-11-27 13:56:34] Threads: 8
[2025-11-27 13:56:34] Checking for CVMFS
[2025-11-27 13:56:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:56:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:56:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:56:35] 2.11.3.0 733561 30394 193932 153385 0 446 34447439 45568000 19286 130560 0 200761290 99.795 134459229 23011 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-27 13:56:35] CVMFS is ok
[2025-11-27 13:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:56:35] Further information can be found at the LHC@home message board.
[2025-11-27 13:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:56:35] Checking for apptainer binary...
[2025-11-27 13:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:56:35] Running /usr/bin/apptainer --version
[2025-11-27 13:56:35] apptainer version 1.4.1-1.el9
[2025-11-27 13:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:56:36] wns0024.triumf.lcg
[2025-11-27 13:56:36] apptainer works
[2025-11-27 13:56:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 13:56:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 13:56:37] Starting ATLAS job with PandaID=6891571207
[2025-11-27 13:56:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:07:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . Timing measurements:
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . get job = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . initial setup = 7 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload setup = 25 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-in = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload execution = 350 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-out = 1 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . log creation = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891571207/pilotlog.txt
[2025-11-27 14:07:18] 2025-11-27 22:06:37,771 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 14:07:18] - Log from pilotlog.txt -
[2025-11-27 14:07:18] 2025-11-27 22:06:37,606 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891571207/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | INFO     | extracted standard info from prmon json
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:07:18] 2025-11-27 22:06:37,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 14:07:18] 2025-11-27 22:06:37,632 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 14:07:18] 2025-11-27 22:06:37,632 | WARNING  | wrong length of table data, x=[1764280715.0, 1764280776.0, 1764280837.0, 1764280898.0, 1764280959.0, 1764281020.0], y=[10909.0, 17994.0, 266539.0, 644920.0, 374922
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . Timing measurements:
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . get job = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . initial setup = 7 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload setup = 25 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-in = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload execution = 350 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-out = 1 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . log creation = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891571207/pilotlog.txt
[2025-11-27 14:07:18] 2025-11-27 22:06:37,771 | WARNING  | 
[2025-11-27 14:07:18] [begin log extracts]
[2025-11-27 14:07:18] - Log from pilotlog.txt -
[2025-11-27 14:07:18] 2025-11-27 22:06:37,606 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891571207/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | INFO     | extracted standard info from prmon json
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:07:18] 2025-11-27 22:06:37,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:07:18] 2025-11-27 22:06:37,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 14:07:18] 2025-11-27 22:06:37,632 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 14:07:18] 2025-11-27 22:06:37,632 | WARNING  | wrong length of table data, x=[1764280715.0, 1764280776.0, 1764280837.0, 1764280898.0, 1764280959.0, 1764281020.0], y=[10909.0, 17994.0, 266539.0, 644920.0, 374922
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . Timing measurements:
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . get job = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . initial setup = 7 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload setup = 25 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-in = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . payload execution = 350 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . stage-out = 1 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,633 | INFO     | . log creation = 0 s
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | ..............................
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 14:07:18] 2025-11-27 22:06:37,634 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891571207/pilotlog.txt
[2025-11-27 14:07:18] [end log extracts]
[2025-11-27 14:07:18] 2025-11-27 22:06:37,772 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 14:07:18] 2025-11-27 22:06:37,772 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 14:07:18] 2025-11-27 22:06:38,391 | INFO     | 
[2025-11-27 14:07:18] 2025-11-27 22:06:38,395 | INFO     | job summary report
[2025-11-27 14:07:18] 2025-11-27 22:06:38,395 | INFO     | --------------------------------------------------
[2025-11-27 14:07:18] 2025-11-27 22:06:38,395 | INFO     | PanDA job id: 6891571207
[2025-11-27 14:07:18] 2025-11-27 22:06:38,395 | INFO     | task id: 47493068
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 14:04:01,663 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | pilot state: failed 
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | transexitcode: 65
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | exeerrorcode: 65
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | exitcode: 65
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | cpuconsumptiontime: 52 s
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | nevents: 0
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | neventsw: 0
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | pid: 810017
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | pgrp: 810017
[2025-11-27 14:07:18] 2025-11-27 22:06:38,396 | INFO     | corecount: 8
[2025-11-27 14:07:18] 2025-11-27 22:06:38,397 | INFO     | event service: False
[2025-11-27 14:07:18] 2025-11-27 22:06:38,397 | INFO     | sizes: {0: 2284130, 1: 2284329, 12: 2284329, 19: 2284619, 23: 2284647, 380: 2310231, 381: 2310363, 382: 2314765, 527: 2314903}
[2025-11-27 14:07:18] 2025-11-27 22:06:38,397 | INFO     | --------------------------------------------------
[2025-11-27 14:07:18] 2025-11-27 22:06:38,397 | INFO     | 
[2025-11-27 14:07:18] 2025-11-27 22:06:38,397 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 14:07:18] 2025-11-27 22:06:38,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,835 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | job 6891571207 has completed (purged errors)
[2025-11-27 14:07:18] 2025-11-27 22:06:38,837 | INFO     | overall cleanup function is called
[2025-11-27 14:07:18] 2025-11-27 22:06:39,864 | INFO     | --- collectZombieJob: --- 10, [810017]
[2025-11-27 14:07:18] 2025-11-27 22:06:39,864 | INFO     | zombie collector waiting for pid 810017
[2025-11-27 14:07:18] 2025-11-27 22:06:39,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:07:18] 2025-11-27 22:06:39,864 | INFO     | collected zombie processes
[2025-11-27 14:07:18] 2025-11-27 22:06:39,864 | INFO     | will attempt to kill all subprocesses of pid=810017
[2025-11-27 14:07:18] 2025-11-27 22:06:41,379 | INFO     | process IDs to be killed: [810017] (in reverse order)
[2025-11-27 14:07:18] 2025-11-27 22:06:42,033 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:07:18] 2025-11-27 22:06:42,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:07:18] 2025-11-27 22:06:42,157 | INFO     | did not find any defunct processes belonging to 810017
[2025-11-27 14:07:18] 2025-11-27 22:06:42,201 | INFO     | did not find any defunct processes belonging to 810017
[2025-11-27 14:07:18] 2025-11-27 22:06:42,202 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:07:18] 2025-11-27 22:06:42,202 | INFO     | ready for new job
[2025-11-27 14:07:18] 2025-11-27 22:06:42,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:07:18] 2025-11-27 22:06:42,225 | INFO     | ***************************************
[2025-11-27 14:07:18] 2025-11-27 22:06:42,225 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:07:18] 2025-11-27 22:06:42,225 | INFO     | ***************************************
[2025-11-27 14:07:18] 2025-11-27 22:06:42,225 | INFO     | 
[2025-11-27 14:07:18] 2025-11-27 22:06:42,227 | INFO     | architecture information:
[2025-11-27 14:07:18] 2025-11-27 22:06:42,241 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:07:18] 2025-11-27 22:06:42,380 | INFO     | cat /etc/os-release:
[2025-11-27 14:07:18] NAME="CentOS Linux"
[2025-11-27 14:07:18] VERSION="7 (Core)"
[2025-11-27 14:07:18] ID="centos"
[2025-11-27 14:07:18] ID_LIKE="rhel fedora"
[2025-11-27 14:07:18] VERSION_ID="7"
[2025-11-27 14:07:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:07:18] ANSI_COLOR="0;31"
[2025-11-27 14:07:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:07:18] HOME_URL="https://www.centos.org/"
[2025-11-27 14:07:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:07:18] 
[2025-11-27 14:07:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:07:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:07:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:07:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:07:18] 
[2025-11-27 14:07:18] 2025-11-27 22:06:42,381 | INFO     | ***************************************
[2025-11-27 14:07:18] 2025-11-27 22:06:42,892 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 14:07:18] 2025-11-27 22:06:43,011 | INFO     | sufficient remaining disk space (1152764608512 B)
[2025-11-27 14:07:18] 2025-11-27 22:06:43,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:07:18] 2025-11-27 22:06:43,012 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:07:18] 2025-11-27 22:06:43,012 | INFO     | update_server=False
[2025-11-27 14:07:18] 2025-11-27 22:06:43,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:07:18] 2025-11-27 22:06:43,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:07:18] 2025-11-27 22:06:43,260 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:07:18] 2025-11-27 22:06:43,260 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:07:18] 2025-11-27 22:06:43,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:07:18] 2025-11-27 22:06:43,260 | INFO     | will abort loop
[2025-11-27 14:07:18] 2025-11-27 22:06:43,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:07:18] 2025-11-27 22:06:43,374 | INFO     | all payload control threads have been joined
[2025-11-27 14:07:18] 2025-11-27 22:06:43,674 | INFO     | all data control threads have been joined
[2025-11-27 14:07:18] 2025-11-27 22:06:44,018 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,163 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,181 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:07:18] 2025-11-27 22:06:44,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,241 | INFO     | all job control threads have been joined
[2025-11-27 14:07:18] 2025-11-27 22:06:44,266 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,314 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,380 | INFO     | [payload] control thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,512 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,561 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,680 | INFO     | [data] control thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,694 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,835 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:44,985 | INFO     | [job] validate thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:45,020 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:45,247 | INFO     | [job] control thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:45,310 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:06:48,192 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:07:18] 2025-11-27 22:07:10,737 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:07:18] 2025-11-27 22:07:12,044 | INFO     | PID=797577 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 14:07:18] 2025-11-27 22:07:12,044 | INFO     | .. there are 33 such processes running
[2025-11-27 14:07:18] 2025-11-27 22:07:12,044 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:07:18] 2025-11-27 22:07:12,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:07:18] 2025-11-27 22:07:12,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:07:18] 2025-11-27 22:07:12,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845045188416)>', '<ExcThread(monitor, started 139844059653888)>']
[2025-11-27 14:07:18] 2025-11-27 22:07:13,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:07:18] 2025-11-27 22:07:13,050 | INFO     | [monitor] control thread has ended
[2025-11-27 14:07:18] 2025-11-27 22:07:17,181 | INFO     | all workflow threads have been joined
[2025-11-27 14:07:18] 2025-11-27 22:07:17,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:07:18] 2025-11-27 22:07:17,181 | INFO     | traces error code: 0
[2025-11-27 14:07:18] 2025-11-27 22:07:17,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:07:18] 2025-11-27 22:07:17,627 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:07:18] 2025-11-27 22:07:17,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:07:18] 2025-11-27 22:07:17,630 [wrapper] pilotpid: 797577
[2025-11-27 14:07:18] 2025-11-27 22:07:17,632 [wrapper] Pilot exit status: 0
[2025-11-27 14:07:18] 2025-11-27 22:07:17,641 [wrapper] pandaids: 6891571207
[2025-11-27 14:07:18] 2025-11-27 22:07:17,684 [wrapper] cleanup supervisor_pilot  797583 797578
[2025-11-27 14:07:18] 2025-11-27 22:07:17,686 [wrapper] Test setup, not cleaning
[2025-11-27 14:07:18] 2025-11-27 22:07:17,687 [wrapper] apfmon messages muted
[2025-11-27 14:07:18] 2025-11-27 22:07:17,689 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:07:18] 2025-11-27 22:07:17,691 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:07:18]  *** Error codes and diagnostics ***
[2025-11-27 14:07:18]     "exeErrorCode": 65,
[2025-11-27 14:07:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 14:07:18]     "pilotErrorCode": 1305,
[2025-11-27 14:07:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 14:07:18]  *** Listing of results directory ***
[2025-11-27 14:07:18] total 404932
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:45 queuedata.json
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:47 pilot3.tar.gz
[2025-11-27 14:07:18] -rwx------. 1 boinc boinc     36292 Nov 18 07:48 runpilot2-wrapper.sh
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc       100 Nov 27 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:07:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 13:56 run_atlas
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc       105 Nov 27 13:56 job.xml
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc 410353664 Nov 27 13:56 EVNT.47493065._000274.pool.root.1
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc     15120 Nov 27 13:56 start_atlas.sh
[2025-11-27 14:07:18] drwxrwx--x. 2 boinc boinc      4096 Nov 27 13:56 shared
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc    590099 Nov 27 13:56 input.tar.gz
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc      6446 Nov 27 13:56 init_data.xml
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc         0 Nov 27 13:56 boinc_lockfile
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc      2773 Nov 27 13:56 pandaJob.out
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc    991540 Nov 27 13:57 agis_schedconf.cvmfs.json
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc   1516240 Nov 27 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:07:18] drwx------. 5 boinc boinc      4096 Nov 27 13:57 pilot3
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc       524 Nov 27 14:04 boinc_task_state.xml
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc       998 Nov 27 14:04 memory_monitor_summary.json
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc     52842 Nov 27 14:04 log.47493068._002732.job.log.tgz.1
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc        95 Nov 27 14:06 pilot_heartbeat.json
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc     10331 Nov 27 14:06 heartbeat.json
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc      5008 Nov 27 14:07 pilotlog.txt
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc      8192 Nov 27 14:07 boinc_mmap_file
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc    136668 Nov 27 14:07 log.47493068._002732.job.log.1
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc        23 Nov 27 14:07 wrapper_checkpoint.txt
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc       186 Nov 27 14:07 output.list
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc       620 Nov 27 14:07 runtime_log
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc    215040 Nov 27 14:07 result.tar.gz
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc      8526 Nov 27 14:07 runtime_log.err
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc       644 Nov 27 14:07 NFyMDmX7cf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIPFKDmKAMaNn.diag
[2025-11-27 14:07:18] -rw-r--r--. 1 boinc boinc     22550 Nov 27 14:07 stderr.txt
[2025-11-27 14:07:18] No HITS result produced
[2025-11-27 14:07:18]  *** Contents of shared directory: ***
[2025-11-27 14:07:18] total 401548
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc 410353664 Nov 27 13:56 ATLAS.root_0
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc     15120 Nov 27 13:56 start_atlas.sh
[2025-11-27 14:07:18] -rw-r--r--. 2 boinc boinc    590099 Nov 27 13:56 input.tar.gz
[2025-11-27 14:07:18] -rw-------. 1 boinc boinc    215040 Nov 27 14:07 result.tar.gz
14:07:19 (793805): run_atlas exited; CPU time 62.472675
14:07:19 (793805): called boinc_finish(0)

</stderr_txt>
]]>

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