Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:08:52 (13578): wrapper (7.7.26015): starting
17:08:52 (13578): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 17:08:52] Arguments: --nthreads 12
[2025-11-27 17:08:52] Threads: 12
[2025-11-27 17:08:52] Checking for CVMFS
[2025-11-27 17:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:08:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:08:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:08:53] 2.11.2.0 3009 74969 95700 153385 0 82 19722255 20275200 1 130560 0 30945599 99.916 3893045 34932 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 17:08:53] CVMFS is ok
[2025-11-27 17:08:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:08:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 17:08:53] Further information can be found at the LHC@home message board.
[2025-11-27 17:08:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:08:53] Checking for apptainer binary...
[2025-11-27 17:08:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:08:53] Running /usr/bin/apptainer --version
[2025-11-27 17:08:53] apptainer version 1.3.2-1.el7
[2025-11-27 17:08:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:08:54] c-115-42.aglt2.org
[2025-11-27 17:08:54] apptainer works
[2025-11-27 17:08:54] Set ATHENA_PROC_NUMBER=12
[2025-11-27 17:08:54] Set ATHENA_CORE_NUMBER=12
[2025-11-27 17:08:54] Starting ATLAS job with PandaID=6898120555
[2025-11-27 17:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:28:46 (9819): wrapper (7.7.26015): starting
22:28:46 (9819): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 22:28:46] Arguments: --nthreads 12
[2025-11-27 22:28:46] Threads: 12
[2025-11-27 22:28:46] This job has been restarted, cleaning up previous attempt
[2025-11-27 22:28:46] Checking for CVMFS
[2025-11-27 22:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 22:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 22:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 22:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 22:28:46] 2.11.2.0 3009 75289 98972 153395 1 49 20149213 20275200 1 130560 0 31088038 99.916 3907554 34946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 22:28:46] CVMFS is ok
[2025-11-27 22:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 22:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 22:28:46] Further information can be found at the LHC@home message board.
[2025-11-27 22:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 22:28:46] Checking for apptainer binary...
[2025-11-27 22:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 22:28:46] Running /usr/bin/apptainer --version
[2025-11-27 22:28:46] apptainer version 1.3.2-1.el7
[2025-11-27 22:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 22:28:48] c-115-42.aglt2.org
[2025-11-27 22:28:48] apptainer works
[2025-11-27 22:28:48] Set ATHENA_PROC_NUMBER=12
[2025-11-27 22:28:48] Set ATHENA_CORE_NUMBER=12
[2025-11-27 22:28:48] Starting ATLAS job with PandaID=6898120555
[2025-11-27 22:28:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:53:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:53:59] 2025-11-28 09:53:24,501 | INFO     | time since job start (23062s) is within the limit (172800.0s)
[2025-11-28 04:53:59] 2025-11-28 09:53:25,347 | INFO     | monitor loop #1719: job 0:6898120555 is in state 'finished'
[2025-11-28 04:53:59] 2025-11-28 09:53:25,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:53:59] 2025-11-28 09:53:26,503 | INFO     | time since job start (23064s) is within the limit (172800.0s)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,275 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 04:53:59] 2025-11-28 09:53:27,279 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-11-28 04:53:59] 2025-11-28 09:53:27,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898120555/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,282 | INFO     | extracted standard info from prmon json
[2025-11-28 04:53:59] 2025-11-28 09:53:27,282 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:53:59] 2025-11-28 09:53:27,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:53:59] 2025-11-28 09:53:27,289 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:53:59] 2025-11-28 09:53:27,290 | INFO     | sum of square deviations: 16747586338.976099
[2025-11-28 04:53:59] 2025-11-28 09:53:27,295 | INFO     | sum of deviations: 297707947514.5951
[2025-11-28 04:53:59] 2025-11-28 09:53:27,295 | INFO     | mean x: 1764312069.7698412
[2025-11-28 04:53:59] 2025-11-28 09:53:27,295 | INFO     | mean y: 3889688.087301587
[2025-11-28 04:53:59] 2025-11-28 09:53:27,295 | INFO     | intersect: -31358822193.804024
[2025-11-28 04:53:59] 2025-11-28 09:53:27,296 | INFO     | chi2: 5.299668100626546
[2025-11-28 04:53:59] 2025-11-28 09:53:27,296 | INFO     | sum of square deviations: 16091781896.10723
[2025-11-28 04:53:59] 2025-11-28 09:53:27,299 | INFO     | sum of deviations: 453414254586.04047
[2025-11-28 04:53:59] 2025-11-28 09:53:27,299 | INFO     | mean x: 1764311917.2734585
[2025-11-28 04:53:59] 2025-11-28 09:53:27,299 | INFO     | mean y: 3925839.852546917
[2025-11-28 04:53:59] 2025-11-28 09:53:27,299 | INFO     | intersect: -49708665220.14267
[2025-11-28 04:53:59] 2025-11-28 09:53:27,300 | INFO     | chi2: 2.563542448413911
[2025-11-28 04:53:59] 2025-11-28 09:53:27,300 | INFO     | current chi2=2.563542448413911 (change=51.628245396898734 %)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,300 | INFO     | sum of square deviations: 15453304106.279871
[2025-11-28 04:53:59] 2025-11-28 09:53:27,303 | INFO     | sum of deviations: 467544624898.829
[2025-11-28 04:53:59] 2025-11-28 09:53:27,303 | INFO     | mean x: 1764311764.7744565
[2025-11-28 04:53:59] 2025-11-28 09:53:27,303 | INFO     | mean y: 3929165.7690217393
[2025-11-28 04:53:59] 2025-11-28 09:53:27,303 | INFO     | intersect: -53375883759.21224
[2025-11-28 04:53:59] 2025-11-28 09:53:27,304 | INFO     | chi2: 2.4123124683177863
[2025-11-28 04:53:59] 2025-11-28 09:53:27,304 | INFO     | current chi2=2.4123124683177863 (change=5.899257887837669 %)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,304 | INFO     | right removable region: 367
[2025-11-28 04:53:59] 2025-11-28 09:53:27,304 | INFO     | sum of square deviations: 16091719676.10723
[2025-11-28 04:53:59] 2025-11-28 09:53:27,307 | INFO     | sum of deviations: 163550246915.35123
[2025-11-28 04:53:59] 2025-11-28 09:53:27,307 | INFO     | mean x: 1764312222.2734585
[2025-11-28 04:53:59] 2025-11-28 09:53:27,307 | INFO     | mean y: 3920756.0455764076
[2025-11-28 04:53:59] 2025-11-28 09:53:27,307 | INFO     | intersect: -17927891716.243313
[2025-11-28 04:53:59] 2025-11-28 09:53:27,308 | INFO     | chi2: 3.009105284831592
[2025-11-28 04:53:59] 2025-11-28 09:53:27,308 | INFO     | current chi2=3.009105284831592 (change=43.220872935876024 %)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,308 | INFO     | sum of square deviations: 15453225050.279871
[2025-11-28 04:53:59] 2025-11-28 09:53:27,311 | INFO     | sum of deviations: 134145669946.59802
[2025-11-28 04:53:59] 2025-11-28 09:53:27,311 | INFO     | mean x: 1764312374.7744565
[2025-11-28 04:53:59] 2025-11-28 09:53:27,311 | INFO     | mean y: 3927767.4891304346
[2025-11-28 04:53:59] 2025-11-28 09:53:27,311 | INFO     | intersect: -15311636766.071222
[2025-11-28 04:53:59] 2025-11-28 09:53:27,312 | INFO     | chi2: 2.9618516398149946
[2025-11-28 04:53:59] 2025-11-28 09:53:27,312 | INFO     | current chi2=2.9618516398149946 (change=1.570355323052183 %)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,312 | INFO     | left removable region: 20
[2025-11-28 04:53:59] 2025-11-28 09:53:27,312 | INFO     | sum of square deviations: 12955815324.322767
[2025-11-28 04:53:59] 2025-11-28 09:53:27,315 | INFO     | sum of deviations: 268868901029.45825
[2025-11-28 04:53:59] 2025-11-28 09:53:27,315 | INFO     | mean x: 1764312344.2824206
[2025-11-28 04:53:59] 2025-11-28 09:53:27,315 | INFO     | mean y: 3977650.0259365994
[2025-11-28 04:53:59] 2025-11-28 09:53:27,315 | INFO     | intersect: -36610369591.35218
[2025-11-28 04:53:59] 2025-11-28 09:53:27,316 | INFO     | chi2: 0.023111066170740956
[2025-11-28 04:53:59] 2025-11-28 09:53:27,316 | INFO     | current memory leak: 20.75 B/s (using 347 data points, chi2=0.02)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,316 | INFO     | could have reported an average CPU frequency of 2592 MHz (16 samples)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,316 | INFO     | ..............................
[2025-11-28 04:53:59] 2025-11-28 09:53:27,316 | INFO     | . Timing measurements:
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . get job = 0 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . initial setup = 2 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . payload setup = 7 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . stage-in = 0 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . payload execution = 23028 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . stage-out = 2 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | . log creation = 0 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,317 | INFO     | ..............................
[2025-11-28 04:53:59] 2025-11-28 09:53:27,391 | INFO     | 
[2025-11-28 04:53:59] 2025-11-28 09:53:27,391 | INFO     | job summary report
[2025-11-28 04:53:59] 2025-11-28 09:53:27,396 | INFO     | --------------------------------------------------
[2025-11-28 04:53:59] 2025-11-28 09:53:27,396 | INFO     | PanDA job id: 6898120555
[2025-11-28 04:53:59] 2025-11-28 09:53:27,396 | INFO     | task id: 47556161
[2025-11-28 04:53:59] 2025-11-28 09:53:27,396 | INFO     | errors: (none)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | pilot state: finished 
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | transexitcode: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | exeerrorcode: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | exeerrordiag: 
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | exitcode: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:27,397 | INFO     | exitmsg: OK
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | cpuconsumptiontime: 267035 s
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | nevents: 1000
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | neventsw: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | pid: 20020
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | pgrp: 20020
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | corecount: 12
[2025-11-28 04:53:59] 2025-11-28 09:53:27,398 | INFO     | event service: False
[2025-11-28 04:53:59] 2025-11-28 09:53:27,399 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 23039: 2320375, 23042: 2329425, 23049: 2329615}
[2025-11-28 04:53:59] 2025-11-28 09:53:27,399 | INFO     | --------------------------------------------------
[2025-11-28 04:53:59] 2025-11-28 09:53:27,399 | INFO     | 
[2025-11-28 04:53:59] 2025-11-28 09:53:27,399 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 04:53:59] 2025-11-28 09:53:27,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:53:59] 2025-11-28 09:53:27,428 | INFO     | job 6898120555 has completed (purged errors)
[2025-11-28 04:53:59] 2025-11-28 09:53:27,428 | INFO     | overall cleanup function is called
[2025-11-28 04:53:59] 2025-11-28 09:53:28,444 | INFO     | --- collectZombieJob: --- 10, [20020]
[2025-11-28 04:53:59] 2025-11-28 09:53:28,445 | INFO     | zombie collector waiting for pid 20020
[2025-11-28 04:53:59] 2025-11-28 09:53:28,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:53:59] 2025-11-28 09:53:28,445 | INFO     | collected zombie processes
[2025-11-28 04:53:59] 2025-11-28 09:53:28,445 | INFO     | will attempt to kill all subprocesses of pid=20020
[2025-11-28 04:53:59] 2025-11-28 09:53:28,535 | INFO     | process IDs to be killed: [20020] (in reverse order)
[2025-11-28 04:53:59] 2025-11-28 09:53:28,588 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:53:59] 2025-11-28 09:53:28,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:53:59] 2025-11-28 09:53:28,592 | INFO     | did not find any defunct processes belonging to 20020
[2025-11-28 04:53:59] 2025-11-28 09:53:28,596 | INFO     | did not find any defunct processes belonging to 20020
[2025-11-28 04:53:59] 2025-11-28 09:53:28,598 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:53:59] 2025-11-28 09:53:28,598 | INFO     | ready for new job
[2025-11-28 04:53:59] 2025-11-28 09:53:28,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:53:59] 2025-11-28 09:53:28,600 | INFO     | ***************************************
[2025-11-28 04:53:59] 2025-11-28 09:53:28,600 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:53:59] 2025-11-28 09:53:28,600 | INFO     | ***************************************
[2025-11-28 04:53:59] 2025-11-28 09:53:28,600 | INFO     | 
[2025-11-28 04:53:59] 2025-11-28 09:53:28,600 | INFO     | architecture information:
[2025-11-28 04:53:59] 2025-11-28 09:53:28,601 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:53:59] 2025-11-28 09:53:28,617 | INFO     | cat /etc/os-release:
[2025-11-28 04:53:59] NAME="CentOS Linux"
[2025-11-28 04:53:59] VERSION="7 (Core)"
[2025-11-28 04:53:59] ID="centos"
[2025-11-28 04:53:59] ID_LIKE="rhel fedora"
[2025-11-28 04:53:59] VERSION_ID="7"
[2025-11-28 04:53:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:53:59] ANSI_COLOR="0;31"
[2025-11-28 04:53:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:53:59] HOME_URL="https://www.centos.org/"
[2025-11-28 04:53:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:53:59] 
[2025-11-28 04:53:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:53:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:53:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:53:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:53:59] 
[2025-11-28 04:53:59] 2025-11-28 09:53:28,617 | INFO     | ***************************************
[2025-11-28 04:53:59] 2025-11-28 09:53:29,120 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 04:53:59] 2025-11-28 09:53:29,137 | INFO     | sufficient remaining disk space (17470324736 B)
[2025-11-28 04:53:59] 2025-11-28 09:53:29,137 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:53:59] 2025-11-28 09:53:29,137 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:53:59] 2025-11-28 09:53:29,137 | INFO     | update_server=False
[2025-11-28 04:53:59] 2025-11-28 09:53:29,137 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:53:59] 2025-11-28 09:53:29,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:53:59] 2025-11-28 09:53:29,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:53:59] 2025-11-28 09:53:29,138 | INFO     | aborting loop
[2025-11-28 04:53:59] 2025-11-28 09:53:29,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:53:59] 2025-11-28 09:53:29,572 | INFO     | all data control threads have been joined
[2025-11-28 04:53:59] 2025-11-28 09:53:29,678 | INFO     | all payload control threads have been joined
[2025-11-28 04:53:59] 2025-11-28 09:53:30,143 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,143 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,144 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,208 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,240 | INFO     | [job] validate thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,351 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,578 | INFO     | [data] control thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,684 | INFO     | [payload] control thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:30,772 | INFO     | all job control threads have been joined
[2025-11-28 04:53:59] 2025-11-28 09:53:31,144 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:31,211 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:31,252 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:31,524 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:31,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:53:59] 2025-11-28 09:53:31,777 | INFO     | [job] control thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:35,610 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:53:59] 2025-11-28 09:53:40,087 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:53:59] 2025-11-28 09:53:40,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495613278016)>', '<ExcThread(monitor, started 140494713628416)>']
[2025-11-28 04:53:59] 2025-11-28 09:53:45,502 | INFO     | all workflow threads have been joined
[2025-11-28 04:53:59] 2025-11-28 09:53:45,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:53:59] 2025-11-28 09:53:45,503 | INFO     | traces error code: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:45,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:53:59] 2025-11-28 09:53:59,679 | INFO     | PID=13610 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 04:53:59] 2025-11-28 09:53:59,680 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:53:59] 2025-11-28 09:53:59,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:53:59] 2025-11-28 09:53:59,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:53:59] 2025-11-28 09:53:59,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:53:59] 2025-11-28 09:53:59,681 | INFO     | [monitor] control thread has ended
[2025-11-28 04:53:59] 2025-11-28 09:53:59,773 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:53:59] 2025-11-28 09:53:59,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:53:59] 2025-11-28 09:53:59,780 [wrapper] pilotpid: 13610
[2025-11-28 04:53:59] 2025-11-28 09:53:59,785 [wrapper] Pilot exit status: 0
[2025-11-28 04:53:59] 2025-11-28 09:53:59,799 [wrapper] pandaids: 6898120555 6898120555
[2025-11-28 04:53:59] 2025-11-28 09:53:59,840 [wrapper] cleanup supervisor_pilot 22889 13611
[2025-11-28 04:53:59] 2025-11-28 09:53:59,844 [wrapper] Test setup, not cleaning
[2025-11-28 04:53:59] 2025-11-28 09:53:59,848 [wrapper] apfmon messages muted
[2025-11-28 04:53:59] 2025-11-28 09:53:59,851 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:53:59] 2025-11-28 09:53:59,855 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:53:59]  *** Error codes and diagnostics ***
[2025-11-28 04:53:59]     "exeErrorCode": 0,
[2025-11-28 04:53:59]     "exeErrorDiag": "",
[2025-11-28 04:53:59]     "pilotErrorCode": 0,
[2025-11-28 04:53:59]     "pilotErrorDiag": "",
[2025-11-28 04:53:59]  *** Listing of results directory ***
[2025-11-28 04:53:59] total 1712048
[2025-11-28 04:53:59] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 22:36 queuedata.json
[2025-11-28 04:53:59] -rwx------ 1 boincer umatlas     36292 Nov 25 22:39 runpilot2-wrapper.sh
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas       100 Nov 27 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:53:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 17:08 run_atlas
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas       105 Nov 27 17:08 job.xml
[2025-11-28 04:53:59] -rw-r--r-- 3 boincer umatlas 409764017 Nov 27 17:08 EVNT.47483658._002436.pool.root.1
[2025-11-28 04:53:59] -rw-r--r-- 3 boincer umatlas 409764017 Nov 27 17:08 ATLAS.root_0
[2025-11-28 04:53:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 17:08 start_atlas.sh
[2025-11-28 04:53:59] drwxrwx--x 2 boincer umatlas      4096 Nov 27 17:08 shared
[2025-11-28 04:53:59] -rw-r--r-- 2 boincer umatlas    590104 Nov 27 17:08 input.tar.gz
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas         0 Nov 27 17:08 boinc_lockfile
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 22:28 pandaJob.out
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas        57 Nov 27 22:28 setup.sh.local
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas    991850 Nov 27 22:29 agis_schedconf.cvmfs.json
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas       533 Nov 28 04:44 boinc_task_state.xml
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas      5956 Nov 28 04:49 init_data.xml
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas 918952524 Nov 28 04:52 HITS.47556161._004188.pool.root.1
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas      1060 Nov 28 04:53 memory_monitor_summary.json
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas   1516240 Nov 28 04:53 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas   2149235 Nov 28 04:53 log.47556161._004188.job.log.tgz.1
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas      8667 Nov 28 04:53 heartbeat.json
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 04:53 boinc_mmap_file
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas        29 Nov 28 04:53 wrapper_checkpoint.txt
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas       745 Nov 28 04:53 pilotlog.txt
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas        96 Nov 28 04:53 pilot_heartbeat.json
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas   3221863 Nov 28 04:53 log.47556161._004188.job.log.1
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas       353 Nov 28 04:53 output.list
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas       620 Nov 28 04:53 runtime_log
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas   5386240 Nov 28 04:53 result.tar.gz
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas      9430 Nov 28 04:53 runtime_log.err
[2025-11-28 04:53:59] -rw------- 1 boincer umatlas       794 Nov 28 04:53 K1KLDmsYLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXrJKDmUSMI8m.diag
[2025-11-28 04:53:59] -rw-r--r-- 1 boincer umatlas     23465 Nov 28 04:53 stderr.txt
[2025-11-28 04:54:00] HITS file was successfully produced:
[2025-11-28 04:54:00] -rw------- 1 boincer umatlas 918952524 Nov 28 04:52 shared/HITS.pool.root.1
[2025-11-28 04:54:00]  *** Contents of shared directory: ***
[2025-11-28 04:54:00] total 1303440
[2025-11-28 04:54:00] -rw-r--r-- 3 boincer umatlas 409764017 Nov 27 17:08 ATLAS.root_0
[2025-11-28 04:54:00] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 17:08 start_atlas.sh
[2025-11-28 04:54:00] -rw-r--r-- 2 boincer umatlas    590104 Nov 27 17:08 input.tar.gz
[2025-11-28 04:54:00] -rw------- 1 boincer umatlas 918952524 Nov 28 04:52 HITS.pool.root.1
[2025-11-28 04:54:00] -rw------- 1 boincer umatlas   5386240 Nov 28 04:53 result.tar.gz
04:54:01 (9819): run_atlas exited; CPU time 263793.254896
04:54:01 (9819): called boinc_finish(0)

</stderr_txt>
]]>

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