Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
15:03:59 (2554512): wrapper (7.7.26015): starting
15:03:59 (2554512): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 15:03:59] Arguments: --nthreads 4
[2025-11-27 15:03:59] Threads: 4
[2025-11-27 15:03:59] Checking for CVMFS
[2025-11-27 15:03:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:03:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:03:59] 2.13.2.0 774864 6203 58424 153385 0 90 3515498 4096000 5100 130560 0 18167265 99.966 648115 1278 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 15:03:59] CVMFS is ok
[2025-11-27 15:03:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 15:03:59] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 15:03:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 15:03:59] Further information can be found at the LHC@home message board.
[2025-11-27 15:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:03:59] Checking for apptainer binary...
[2025-11-27 15:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:03:59] Running /usr/bin/apptainer --version
[2025-11-27 15:03:59] apptainer version 1.4.3
[2025-11-27 15:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:03:59] msi670e
[2025-11-27 15:03:59] apptainer works
[2025-11-27 15:03:59] Set ATHENA_PROC_NUMBER=4
[2025-11-27 15:03:59] Set ATHENA_CORE_NUMBER=4
[2025-11-27 15:03:59] Starting ATLAS job with PandaID=6898041259
[2025-11-27 15:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:47:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:47:02] 2025-11-28 04:46:28,462 | INFO     | executing command: lscpu
[2025-11-27 21:47:02] 2025-11-28 04:46:28,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 21:47:02] 2025-11-28 04:46:28,881 | INFO     | time since job start (24142s) is within the limit (172800.0s)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,563 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:47:02] 2025-11-28 04:46:30,566 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5044.280343750001
[2025-11-27 21:47:02] 2025-11-28 04:46:30,568 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6898041259/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,569 | INFO     | extracted standard info from prmon json
[2025-11-27 21:47:02] 2025-11-28 04:46:30,569 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:47:02] 2025-11-28 04:46:30,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:47:02] 2025-11-28 04:46:30,572 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:47:02] 2025-11-28 04:46:30,572 | INFO     | sum of square deviations: 19255784295.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | sum of deviations: 139936500298.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | mean x: 1764293112.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | mean y: 2242347.7803030303
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | intersect: -12819307783.943258
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | chi2: 3.0811786303186697
[2025-11-27 21:47:02] 2025-11-28 04:46:30,574 | INFO     | sum of square deviations: 18535566140.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | sum of deviations: 188832452047.99997
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | mean x: 1764292960.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | mean y: 2252623.3734015347
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | intersect: -17971612499.034126
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | chi2: 1.603489915528903
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | current chi2=1.603489915528903 (change=47.958553919898414 %)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,576 | INFO     | sum of square deviations: 17833534372.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | sum of deviations: 184690084208.49997
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | mean x: 1764292807.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | mean y: 2251723.6295336788
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | intersect: -18269358400.278103
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | chi2: 1.6025463688258426
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | current chi2=1.6025463688258426 (change=0.05884332005600995 %)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,578 | INFO     | right removable region: 385
[2025-11-27 21:47:02] 2025-11-28 04:46:30,579 | INFO     | sum of square deviations: 18535566140.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,580 | INFO     | sum of deviations: 79452496157.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,580 | INFO     | mean x: 1764293265.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,580 | INFO     | mean y: 2255086.217391304
[2025-11-27 21:47:02] 2025-11-28 04:46:30,580 | INFO     | intersect: -7560368186.169662
[2025-11-27 21:47:02] 2025-11-28 04:46:30,581 | INFO     | chi2: 1.5272013767540544
[2025-11-27 21:47:02] 2025-11-28 04:46:30,581 | INFO     | current chi2=1.5272013767540544 (change=50.434507051085696 %)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,581 | INFO     | sum of square deviations: 17833534372.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,582 | INFO     | sum of deviations: 71830341593.50003
[2025-11-27 21:47:02] 2025-11-28 04:46:30,582 | INFO     | mean x: 1764293417.5
[2025-11-27 21:47:02] 2025-11-28 04:46:30,582 | INFO     | mean y: 2256743.821243523
[2025-11-27 21:47:02] 2025-11-28 04:46:30,582 | INFO     | intersect: -7104007006.431809
[2025-11-27 21:47:02] 2025-11-28 04:46:30,583 | INFO     | chi2: 1.5224666844160986
[2025-11-27 21:47:02] 2025-11-28 04:46:30,583 | INFO     | current chi2=1.5224666844160986 (change=0.3100241009485654 %)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,583 | INFO     | left removable region: 20
[2025-11-27 21:47:02] 2025-11-28 04:46:30,583 | INFO     | sum of square deviations: 15078347830.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,584 | INFO     | sum of deviations: 99965302999.00003
[2025-11-27 21:47:02] 2025-11-28 04:46:30,584 | INFO     | mean x: 1764293387.0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,584 | INFO     | mean y: 2270580.312328767
[2025-11-27 21:47:02] 2025-11-28 04:46:30,584 | INFO     | intersect: -11694509796.360214
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | chi2: 0.016480503810551696
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | current memory leak: 6.63 B/s (using 365 data points, chi2=0.02)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | could have reported an average CPU frequency of 4918 MHz (17 samples)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | ..............................
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . Timing measurements:
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . get job = 0 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . initial setup = 2 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . payload setup = 2 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . stage-in = 0 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . payload execution = 24113 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . stage-out = 6 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | . log creation = 0 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,585 | INFO     | ..............................
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | 
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | job summary report
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | --------------------------------------------------
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | PanDA job id: 6898041259
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | task id: 47556161
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | errors: (none)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | pilot state: finished 
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | transexitcode: 0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | exeerrorcode: 0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | exeerrordiag: 
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | exitcode: 0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | exitmsg: OK
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | cpuconsumptiontime: 95667 s
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | nevents: 1000
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | neventsw: 0
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | pid: 2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | pgrp: 2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | corecount: 4
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | event service: False
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | sizes: {0: 2284271, 2: 2284533, 11: 2284561, 24119: 2320884, 24126: 2329892, 24128: 2329948, 24131: 2330386}
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | --------------------------------------------------
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | 
[2025-11-27 21:47:02] 2025-11-28 04:46:30,627 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:47:02] 2025-11-28 04:46:30,640 | INFO     | job 6898041259 has completed (purged errors)
[2025-11-27 21:47:02] 2025-11-28 04:46:30,641 | INFO     | overall cleanup function is called
[2025-11-27 21:47:02] 2025-11-28 04:46:31,650 | INFO     | --- collectZombieJob: --- 10, [2565020]
[2025-11-27 21:47:02] 2025-11-28 04:46:31,650 | INFO     | zombie collector waiting for pid 2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:31,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:47:02] 2025-11-28 04:46:31,650 | INFO     | collected zombie processes
[2025-11-27 21:47:02] 2025-11-28 04:46:31,650 | INFO     | will attempt to kill all subprocesses of pid=2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:31,738 | INFO     | process IDs to be killed: [2565020] (in reverse order)
[2025-11-27 21:47:02] 2025-11-28 04:46:31,776 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:47:02] 2025-11-28 04:46:31,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:47:02] 2025-11-28 04:46:31,779 | INFO     | did not find any defunct processes belonging to 2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:31,781 | INFO     | did not find any defunct processes belonging to 2565020
[2025-11-27 21:47:02] 2025-11-28 04:46:31,782 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:47:02] 2025-11-28 04:46:31,782 | INFO     | ready for new job
[2025-11-27 21:47:02] 2025-11-28 04:46:31,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:47:02] 2025-11-28 04:46:31,784 | INFO     | ***************************************
[2025-11-27 21:47:02] 2025-11-28 04:46:31,784 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:47:02] 2025-11-28 04:46:31,784 | INFO     | ***************************************
[2025-11-27 21:47:02] 2025-11-28 04:46:31,784 | INFO     | 
[2025-11-27 21:47:02] 2025-11-28 04:46:31,785 | INFO     | architecture information:
[2025-11-27 21:47:02] 2025-11-28 04:46:31,785 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:47:02] 2025-11-28 04:46:31,793 | INFO     | cat /etc/os-release:
[2025-11-27 21:47:02] NAME="CentOS Linux"
[2025-11-27 21:47:02] VERSION="7 (Core)"
[2025-11-27 21:47:02] ID="centos"
[2025-11-27 21:47:02] ID_LIKE="rhel fedora"
[2025-11-27 21:47:02] VERSION_ID="7"
[2025-11-27 21:47:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:47:02] ANSI_COLOR="0;31"
[2025-11-27 21:47:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:47:02] HOME_URL="https://www.centos.org/"
[2025-11-27 21:47:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:47:02] 
[2025-11-27 21:47:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:47:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:47:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:47:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:47:02] 
[2025-11-27 21:47:02] 2025-11-28 04:46:31,793 | INFO     | ***************************************
[2025-11-27 21:47:02] 2025-11-28 04:46:32,296 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | INFO     | sufficient remaining disk space (437583347712 B)
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | INFO     | update_server=False
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:47:02] 2025-11-28 04:46:32,306 | INFO     | aborting loop
[2025-11-27 21:47:02] 2025-11-28 04:46:32,447 | INFO     | all payload control threads have been joined
[2025-11-27 21:47:02] 2025-11-28 04:46:32,467 | INFO     | all data control threads have been joined
[2025-11-27 21:47:02] 2025-11-28 04:46:33,311 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,311 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,311 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,452 | INFO     | [payload] control thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,472 | INFO     | [data] control thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,648 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,652 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:47:02] 2025-11-28 04:46:33,710 | INFO     | [job] validate thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,830 | INFO     | all job control threads have been joined
[2025-11-27 21:47:02] 2025-11-28 04:46:33,890 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:33,925 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:34,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:47:02] 2025-11-28 04:46:34,581 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:34,736 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:34,835 | INFO     | [job] control thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:35,701 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:38,136 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:47:02] 2025-11-28 04:46:45,970 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:47:02] 2025-11-28 04:46:46,606 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128127033157440)>', '<ExcThread(monitor, started 128126306735872)>']
[2025-11-27 21:47:02] 2025-11-28 04:46:51,609 | INFO     | all workflow threads have been joined
[2025-11-27 21:47:02] 2025-11-28 04:46:51,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:47:02] 2025-11-28 04:46:51,609 | INFO     | traces error code: 0
[2025-11-27 21:47:02] 2025-11-28 04:46:51,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:47:02] 2025-11-28 04:47:02,034 | INFO     | PID=2558364 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:47:02] 2025-11-28 04:47:02,034 | INFO     | .. there are 7 such processes running
[2025-11-27 21:47:02] 2025-11-28 04:47:02,035 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:47:02] 2025-11-28 04:47:02,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:47:02] 2025-11-28 04:47:02,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:47:02] 2025-11-28 04:47:02,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:47:02] 2025-11-28 04:47:02,035 | INFO     | [monitor] control thread has ended
[2025-11-27 21:47:02] 2025-11-28 04:47:02,091 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:47:02] 2025-11-28 04:47:02,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:47:02] 2025-11-28 04:47:02,094 [wrapper] pilotpid: 2558364
[2025-11-27 21:47:02] 2025-11-28 04:47:02,095 [wrapper] Pilot exit status: 0
[2025-11-27 21:47:02] 2025-11-28 04:47:02,101 [wrapper] pandaids: 6898041259
[2025-11-27 21:47:02] 2025-11-28 04:47:02,125 [wrapper] cleanup supervisor_pilot 2920808 2558365
[2025-11-27 21:47:02] 2025-11-28 04:47:02,126 [wrapper] Test setup, not cleaning
[2025-11-27 21:47:02] 2025-11-28 04:47:02,128 [wrapper] apfmon messages muted
[2025-11-27 21:47:02] 2025-11-28 04:47:02,129 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:47:02] 2025-11-28 04:47:02,131 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:47:02]  *** Error codes and diagnostics ***
[2025-11-27 21:47:02]     "exeErrorCode": 0,
[2025-11-27 21:47:02]     "exeErrorDiag": "",
[2025-11-27 21:47:02]     "pilotErrorCode": 0,
[2025-11-27 21:47:02]     "pilotErrorDiag": "",
[2025-11-27 21:47:02]  *** Listing of results directory ***
[2025-11-27 21:47:02] total 1312952
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc    576529 Nov 25 19:38 pilot3.tar.gz
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc      5112 Nov 25 20:12 queuedata.json
[2025-11-27 21:47:02] -rwx------ 1 boinc boinc     36292 Nov 25 20:13 runpilot2-wrapper.sh
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:47:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:03 run_atlas
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:03 job.xml
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc      9949 Nov 27 15:03 init_data.xml
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc 411548940 Nov 27 15:03 EVNT.47483658._002418.pool.root.1
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:03 start_atlas.sh
[2025-11-27 21:47:02] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:03 shared
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc    590105 Nov 27 15:03 input.tar.gz
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:03 boinc_lockfile
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc      2785 Nov 27 15:03 pandaJob.out
[2025-11-27 21:47:02] -rw------- 1 boinc boinc    991540 Nov 27 15:04 agis_schedconf.cvmfs.json
[2025-11-27 21:47:02] drwx------ 5 boinc boinc      4096 Nov 27 15:04 pilot3
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc       531 Nov 27 21:43 boinc_task_state.xml
[2025-11-27 21:47:02] -rw------- 1 boinc boinc 919530437 Nov 27 21:45 HITS.47556161._004010.pool.root.1
[2025-11-27 21:47:02] -rw------- 1 boinc boinc      1032 Nov 27 21:46 memory_monitor_summary.json
[2025-11-27 21:47:02] -rw------- 1 boinc boinc   1516240 Nov 27 21:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:47:02] -rw------- 1 boinc boinc   1232840 Nov 27 21:46 log.47556161._004010.job.log.tgz.1
[2025-11-27 21:47:02] -rw------- 1 boinc boinc      8541 Nov 27 21:46 heartbeat.json
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc      8192 Nov 27 21:47 boinc_mmap_file
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc        28 Nov 27 21:47 wrapper_checkpoint.txt
[2025-11-27 21:47:02] -rw------- 1 boinc boinc       822 Nov 27 21:47 pilotlog.txt
[2025-11-27 21:47:02] -rw------- 1 boinc boinc        95 Nov 27 21:47 pilot_heartbeat.json
[2025-11-27 21:47:02] -rw------- 1 boinc boinc   3502795 Nov 27 21:47 log.47556161._004010.job.log.1
[2025-11-27 21:47:02] -rw------- 1 boinc boinc       353 Nov 27 21:47 output.list
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc       620 Nov 27 21:47 runtime_log
[2025-11-27 21:47:02] -rw------- 1 boinc boinc   4751360 Nov 27 21:47 result.tar.gz
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc      8920 Nov 27 21:47 runtime_log.err
[2025-11-27 21:47:02] -rw------- 1 boinc boinc       660 Nov 27 21:47 pvxKDmf9Ki8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfqJKDmzJjVfn.diag
[2025-11-27 21:47:02] -rw-r--r-- 1 boinc boinc     21391 Nov 27 21:47 stderr.txt
[2025-11-27 21:47:02] HITS file was successfully produced:
[2025-11-27 21:47:02] -rw------- 1 boinc boinc 919530437 Nov 27 21:45 shared/HITS.pool.root.1
[2025-11-27 21:47:02]  *** Contents of shared directory: ***
[2025-11-27 21:47:02] total 1305128
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc 411548940 Nov 27 15:03 ATLAS.root_0
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:03 start_atlas.sh
[2025-11-27 21:47:02] -rw-r--r-- 2 boinc boinc    590105 Nov 27 15:03 input.tar.gz
[2025-11-27 21:47:02] -rw------- 1 boinc boinc 919530437 Nov 27 21:45 HITS.pool.root.1
[2025-11-27 21:47:02] -rw------- 1 boinc boinc   4751360 Nov 27 21:47 result.tar.gz
21:47:03 (2554512): run_atlas exited; CPU time 95637.802989
21:47:03 (2554512): called boinc_finish(0)

</stderr_txt>
]]>

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