Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:57:00 (5540): wrapper (7.7.26015): starting
21:57:00 (5540): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 21:57:00] Arguments: --nthreads 8
[2025-11-29 21:57:00] Threads: 8
[2025-11-29 21:57:00] Checking for CVMFS
[2025-11-29 21:57:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 21:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 21:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 21:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 21:57:03] 2.11.2.0 19872 290046 141608 153455 0 85 17408391 25165824 2504 130560 25 123624704 99.872 79921512 2579 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 21:57:03] CVMFS is ok
[2025-11-29 21:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 21:57:03] Checking for apptainer binary...
[2025-11-29 21:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 21:57:03] Running /usr/bin/apptainer --version
[2025-11-29 21:57:03] apptainer version 1.3.2-1.el7
[2025-11-29 21:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 21:57:12] cg-vwn350.simple-grid.lan
[2025-11-29 21:57:12] apptainer works
[2025-11-29 21:57:12] Set ATHENA_PROC_NUMBER=8
[2025-11-29 21:57:12] Set ATHENA_CORE_NUMBER=8
[2025-11-29 21:57:12] Starting ATLAS job with PandaID=6898718908
[2025-11-29 21:57:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 22:11:52]  *** The last 200 lines of the pilot log: ***
[2025-11-30 22:11:52] 2025-11-30 21:10:48,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:11:52] 2025-11-30 21:10:49,034 | INFO     | time since job start (86979s) is within the limit (172800.0s)
[2025-11-30 22:11:52] 2025-11-30 21:10:50,827 | INFO     | monitor loop #5848: job 0:6898718908 is in state 'finished'
[2025-11-30 22:11:52] 2025-11-30 21:10:50,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:11:52] 2025-11-30 21:10:51,047 | INFO     | time since job start (86981s) is within the limit (172800.0s)
[2025-11-30 22:11:52] 2025-11-30 21:10:53,058 | INFO     | time since job start (86983s) is within the limit (172800.0s)
[2025-11-30 22:11:52] 2025-11-30 21:10:53,339 | INFO     | monitor loop #5849: job 0:6898718908 is in state 'finished'
[2025-11-30 22:11:52] 2025-11-30 21:10:53,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:11:52] 2025-11-30 21:10:55,064 | INFO     | time since job start (86985s) is within the limit (172800.0s)
[2025-11-30 22:11:52] 2025-11-30 21:10:55,844 | INFO     | monitor loop #5850: job 0:6898718908 is in state 'finished'
[2025-11-30 22:11:52] 2025-11-30 21:10:55,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:11:52] 2025-11-30 21:10:57,074 | INFO     | time since job start (86987s) is within the limit (172800.0s)
[2025-11-30 22:11:52] 2025-11-30 21:10:57,995 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 22:11:52] 2025-11-30 21:10:57,996 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 22:11:52] 2025-11-30 21:10:57,998 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6898718908/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 22:11:52] 2025-11-30 21:10:57,998 | INFO     | extracted standard info from prmon json
[2025-11-30 22:11:52] 2025-11-30 21:10:57,998 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 22:11:52] 2025-11-30 21:10:57,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 22:11:52] 2025-11-30 21:10:58,025 | INFO     | fitting pss+swap vs Time
[2025-11-30 22:11:52] 2025-11-30 21:10:58,027 | INFO     | sum of square deviations: 880375180450.321
[2025-11-30 22:11:52] 2025-11-30 21:10:58,102 | INFO     | sum of deviations: 3367602551773.6357
[2025-11-30 22:11:52] 2025-11-30 21:10:58,102 | INFO     | mean x: 1764493753.605226
[2025-11-30 22:11:52] 2025-11-30 21:10:58,102 | INFO     | mean y: 2836888.02259887
[2025-11-30 22:11:52] 2025-11-30 21:10:58,102 | INFO     | intersect: -6746687404.779643
[2025-11-30 22:11:52] 2025-11-30 21:10:58,104 | INFO     | chi2: 26.063114973494876
[2025-11-30 22:11:52] 2025-11-30 21:10:58,106 | INFO     | sum of square deviations: 871082534689.1914
[2025-11-30 22:11:52] 2025-11-30 21:10:58,236 | INFO     | sum of deviations: 3840293304850.7056
[2025-11-30 22:11:52] 2025-11-30 21:10:58,237 | INFO     | mean x: 1764493601.1091425
[2025-11-30 22:11:52] 2025-11-30 21:10:58,237 | INFO     | mean y: 2844644.534372785
[2025-11-30 22:11:52] 2025-11-30 21:10:58,237 | INFO     | intersect: -7776180525.806276
[2025-11-30 22:11:52] 2025-11-30 21:10:58,239 | INFO     | chi2: 22.780841606463532
[2025-11-30 22:11:52] 2025-11-30 21:10:58,239 | INFO     | current chi2=22.780841606463532 (change=12.593557486775014 %)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,239 | INFO     | right removable region: 1410
[2025-11-30 22:11:52] 2025-11-30 21:10:58,241 | INFO     | sum of square deviations: 871081580039.1923
[2025-11-30 22:11:52] 2025-11-30 21:10:58,316 | INFO     | sum of deviations: 2769598967916.3755
[2025-11-30 22:11:52] 2025-11-30 21:10:58,316 | INFO     | mean x: 1764493906.1091425
[2025-11-30 22:11:52] 2025-11-30 21:10:58,316 | INFO     | mean y: 2846700.5754783843
[2025-11-30 22:11:52] 2025-11-30 21:10:58,316 | INFO     | intersect: -5607351716.241852
[2025-11-30 22:11:52] 2025-11-30 21:10:58,318 | INFO     | chi2: 21.24424957546832
[2025-11-30 22:11:52] 2025-11-30 21:10:58,318 | INFO     | current chi2=21.24424957546832 (change=18.489215133828576 %)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,319 | INFO     | left removable region: 10
[2025-11-30 22:11:52] 2025-11-30 21:10:58,320 | INFO     | sum of square deviations: 850867491830.5535
[2025-11-30 22:11:52] 2025-11-30 21:10:58,369 | INFO     | monitor loop #5851: job 0:6898718908 is in state 'finished'
[2025-11-30 22:11:52] 2025-11-30 21:10:58,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,399 | INFO     | sum of deviations: 2816499616967.2485
[2025-11-30 22:11:52] 2025-11-30 21:10:58,399 | INFO     | mean x: 1764493875.6178572
[2025-11-30 22:11:52] 2025-11-30 21:10:58,399 | INFO     | mean y: 2865279.725714286
[2025-11-30 22:11:52] 2025-11-30 21:10:58,399 | INFO     | intersect: -5837875343.854771
[2025-11-30 22:11:52] 2025-11-30 21:10:58,401 | INFO     | chi2: 13.28729100071766
[2025-11-30 22:11:52] 2025-11-30 21:10:58,401 | INFO     | current memory leak: 3.31 B/s (using 1400 data points, chi2=13.29)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | ..............................
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | . Timing measurements:
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | . get job = 0 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | . initial setup = 10 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | . payload setup = 165 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,403 | INFO     | . stage-in = 0 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,404 | INFO     | . payload execution = 86533 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,404 | INFO     | . stage-out = 4 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,404 | INFO     | . log creation = 1 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,404 | INFO     | ..............................
[2025-11-30 22:11:52] 2025-11-30 21:10:58,499 | INFO     | PID=9366 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 22:11:52] 2025-11-30 21:10:58,499 | INFO     | .. there are 9 such processes running
[2025-11-30 22:11:52] 2025-11-30 21:10:58,564 | INFO     | 
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | job summary report
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | --------------------------------------------------
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | PanDA job id: 6898718908
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | task id: 47556173
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | errors: (none)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | pilot state: finished 
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | transexitcode: 0
[2025-11-30 22:11:52] 2025-11-30 21:10:58,565 | INFO     | exeerrorcode: 0
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | exeerrordiag: 
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | exitcode: 0
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | exitmsg: OK
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | cpuconsumptiontime: 325900 s
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | nevents: 1000
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | neventsw: 0
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | pid: 15966
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | pgrp: 15966
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | corecount: 8
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | event service: False
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | sizes: {0: 2284089, 1: 2284173, 2: 2284372, 13: 2284372, 23: 2284428, 34: 2284456, 45: 2284612, 55: 2284640, 66: 2284668, 77: 2284696, 88: 2284752, 92: 2285322, 98
[2025-11-30 22:11:52] 2025-11-30 21:10:58,566 | INFO     | --------------------------------------------------
[2025-11-30 22:11:52] 2025-11-30 21:10:58,567 | INFO     | 
[2025-11-30 22:11:52] 2025-11-30 21:10:58,567 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-30 22:11:52] 2025-11-30 21:10:58,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | job 6898718908 has completed (purged errors)
[2025-11-30 22:11:52] 2025-11-30 21:10:58,651 | INFO     | overall cleanup function is called
[2025-11-30 22:11:52] 2025-11-30 21:10:59,667 | INFO     | --- collectZombieJob: --- 10, [15966]
[2025-11-30 22:11:52] 2025-11-30 21:10:59,668 | INFO     | zombie collector waiting for pid 15966
[2025-11-30 22:11:52] 2025-11-30 21:10:59,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 22:11:52] 2025-11-30 21:10:59,668 | INFO     | collected zombie processes
[2025-11-30 22:11:52] 2025-11-30 21:10:59,668 | INFO     | will attempt to kill all subprocesses of pid=15966
[2025-11-30 22:11:52] 2025-11-30 21:10:59,788 | INFO     | process IDs to be killed: [15966] (in reverse order)
[2025-11-30 22:11:52] 2025-11-30 21:11:00,230 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 22:11:52] 2025-11-30 21:11:00,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 22:11:52] 2025-11-30 21:11:00,233 | INFO     | did not find any defunct processes belonging to 15966
[2025-11-30 22:11:52] 2025-11-30 21:11:00,236 | INFO     | did not find any defunct processes belonging to 15966
[2025-11-30 22:11:52] 2025-11-30 21:11:00,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 22:11:52] 2025-11-30 21:11:00,291 | INFO     | ready for new job
[2025-11-30 22:11:52] 2025-11-30 21:11:00,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 22:11:52] 2025-11-30 21:11:00,296 | INFO     | ***************************************
[2025-11-30 22:11:52] 2025-11-30 21:11:00,296 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 22:11:52] 2025-11-30 21:11:00,297 | INFO     | ***************************************
[2025-11-30 22:11:52] 2025-11-30 21:11:00,297 | INFO     | 
[2025-11-30 22:11:52] 2025-11-30 21:11:00,297 | INFO     | pilot is running in a VM
[2025-11-30 22:11:52] 2025-11-30 21:11:00,297 | INFO     | architecture information:
[2025-11-30 22:11:52] 2025-11-30 21:11:00,304 | INFO     | executing command: cat /etc/os-release
[2025-11-30 22:11:52] 2025-11-30 21:11:00,479 | INFO     | cat /etc/os-release:
[2025-11-30 22:11:52] NAME="CentOS Linux"
[2025-11-30 22:11:52] VERSION="7 (Core)"
[2025-11-30 22:11:52] ID="centos"
[2025-11-30 22:11:52] ID_LIKE="rhel fedora"
[2025-11-30 22:11:52] VERSION_ID="7"
[2025-11-30 22:11:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 22:11:52] ANSI_COLOR="0;31"
[2025-11-30 22:11:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 22:11:52] HOME_URL="https://www.centos.org/"
[2025-11-30 22:11:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 22:11:52] 
[2025-11-30 22:11:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 22:11:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 22:11:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 22:11:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 22:11:52] 
[2025-11-30 22:11:52] 2025-11-30 21:11:00,479 | INFO     | ***************************************
[2025-11-30 22:11:52] 2025-11-30 21:11:00,983 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-30 22:11:52] 2025-11-30 21:11:01,149 | INFO     | sufficient remaining disk space (487872004096 B)
[2025-11-30 22:11:52] 2025-11-30 21:11:01,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 22:11:52] 2025-11-30 21:11:01,150 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 22:11:52] 2025-11-30 21:11:01,150 | INFO     | update_server=False
[2025-11-30 22:11:52] 2025-11-30 21:11:01,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 22:11:52] 2025-11-30 21:11:01,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 22:11:52] 2025-11-30 21:11:01,435 | INFO     | all payload control threads have been joined
[2025-11-30 22:11:52] 2025-11-30 21:11:01,597 | INFO     | all data control threads have been joined
[2025-11-30 22:11:52] 2025-11-30 21:11:01,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 22:11:52] 2025-11-30 21:11:01,889 | INFO     | aborting loop
[2025-11-30 22:11:52] 2025-11-30 21:11:01,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 22:11:52] 2025-11-30 21:11:01,962 | INFO     | all job control threads have been joined
[2025-11-30 22:11:52] 2025-11-30 21:11:02,157 | INFO     | [job] retrieve thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,381 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,442 | INFO     | [payload] control thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,604 | INFO     | [data] control thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,767 | INFO     | [job] validate thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,853 | INFO     | [data] copytool_in thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,895 | INFO     | [job] job monitor thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,915 | INFO     | [payload] failed_post thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:02,969 | INFO     | [job] control thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,138 | INFO     | [payload] validate_post thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,158 | INFO     | [data] copytool_out thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,189 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,467 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:03,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 22:11:52] 2025-11-30 21:11:04,582 | INFO     | [job] queue monitor thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:05,930 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 22:11:52] 2025-11-30 21:11:30,666 | INFO     | PID=9366 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 22:11:52] 2025-11-30 21:11:30,666 | INFO     | .. there are 9 such processes running
[2025-11-30 22:11:52] 2025-11-30 21:11:30,667 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 22:11:52] 2025-11-30 21:11:30,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 22:11:52] 2025-11-30 21:11:30,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 22:11:52] 2025-11-30 21:11:41,453 | INFO     | [monitor] cgroup control has ended
[2025-11-30 22:11:52] 2025-11-30 21:11:42,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432230942528)>', '<ExcThread(monitor, started 140431807477504)>']
[2025-11-30 22:11:52] 2025-11-30 21:11:43,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 22:11:52] 2025-11-30 21:11:43,745 | INFO     | [monitor] control thread has ended
[2025-11-30 22:11:52] 2025-11-30 21:11:48,005 | INFO     | all workflow threads have been joined
[2025-11-30 22:11:52] 2025-11-30 21:11:48,006 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 22:11:52] 2025-11-30 21:11:48,006 | INFO     | traces error code: 0
[2025-11-30 22:11:52] 2025-11-30 21:11:48,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 22:11:52] 2025-11-30 21:11:48,320 [wrapper] ==== pilot stdout END ====
[2025-11-30 22:11:52] 2025-11-30 21:11:48,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 22:11:52] 2025-11-30 21:11:48,593 [wrapper] pilotpid: 9366
[2025-11-30 22:11:52] 2025-11-30 21:11:48,692 [wrapper] Pilot exit status: 0
[2025-11-30 22:11:52] 2025-11-30 21:11:49,113 [wrapper] pandaids: 6898718908
[2025-11-30 22:11:52] 2025-11-30 21:11:49,205 [wrapper] cleanup supervisor_pilot 24722 9367
[2025-11-30 22:11:52] 2025-11-30 21:11:49,253 [wrapper] Test setup, not cleaning
[2025-11-30 22:11:52] 2025-11-30 21:11:49,315 [wrapper] apfmon messages muted
[2025-11-30 22:11:52] 2025-11-30 21:11:49,371 [wrapper] ==== wrapper stdout END ====
[2025-11-30 22:11:52] 2025-11-30 21:11:49,386 [wrapper] ==== wrapper stderr END ====
[2025-11-30 22:11:52]  *** Error codes and diagnostics ***
[2025-11-30 22:11:52]     "exeErrorCode": 0,
[2025-11-30 22:11:52]     "exeErrorDiag": "",
[2025-11-30 22:11:52]     "pilotErrorCode": 0,
[2025-11-30 22:11:52]     "pilotErrorDiag": "",
[2025-11-30 22:11:52]  *** Listing of results directory ***
[2025-11-30 22:11:52] total 1333012
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-30 22:11:52] -rwx------. 1 boinc boinc     36292 Nov 26 17:42 runpilot2-wrapper.sh
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:43 queuedata.json
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc       100 Nov 29 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 22:11:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 21:56 run_atlas
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc       105 Nov 29 21:56 job.xml
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc 411744840 Nov 29 21:57 EVNT.47483658._003226.pool.root.1
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc      6393 Nov 29 21:57 init_data.xml
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc     15847 Nov 29 21:57 start_atlas.sh
[2025-11-30 22:11:52] drwxrwx--x. 2 boinc boinc        68 Nov 29 21:57 shared
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc    590104 Nov 29 21:57 input.tar.gz
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc         0 Nov 29 21:57 boinc_lockfile
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc      2786 Nov 29 21:57 pandaJob.out
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc    991826 Nov 29 22:01 agis_schedconf.cvmfs.json
[2025-11-30 22:11:52] drwx------. 5 boinc boinc      4096 Nov 29 22:01 pilot3
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc       533 Nov 30 21:47 boinc_task_state.xml
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc 921166849 Nov 30 22:08 HITS.47556173._001830.pool.root.1
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc      1029 Nov 30 22:09 memory_monitor_summary.json
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc   1516240 Nov 30 22:09 agis_ddmendpoints.agis.ALL.json
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc   2494739 Nov 30 22:09 log.47556173._001830.job.log.tgz.1
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc      7939 Nov 30 22:10 heartbeat.json
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc        29 Nov 30 22:11 wrapper_checkpoint.txt
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc      8192 Nov 30 22:11 boinc_mmap_file
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc        95 Nov 30 22:11 pilot_heartbeat.json
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc      4884 Nov 30 22:11 pilotlog.txt
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc  11600108 Nov 30 22:11 log.47556173._001830.job.log.1
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc       353 Nov 30 22:11 output.list
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc       620 Nov 30 22:11 runtime_log
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc  14110720 Nov 30 22:11 result.tar.gz
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc      8833 Nov 30 22:11 runtime_log.err
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc       662 Nov 30 22:11 4r5KDmplXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaKNKDmmn2BQm.diag
[2025-11-30 22:11:52] -rw-r--r--. 1 boinc boinc     21522 Nov 30 22:11 stderr.txt
[2025-11-30 22:11:52] HITS file was successfully produced:
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc 921166849 Nov 30 22:08 shared/HITS.pool.root.1
[2025-11-30 22:11:52]  *** Contents of shared directory: ***
[2025-11-30 22:11:52] total 1316052
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc 411744840 Nov 29 21:57 ATLAS.root_0
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc     15847 Nov 29 21:57 start_atlas.sh
[2025-11-30 22:11:52] -rw-r--r--. 2 boinc boinc    590104 Nov 29 21:57 input.tar.gz
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc 921166849 Nov 30 22:08 HITS.pool.root.1
[2025-11-30 22:11:52] -rw-------. 1 boinc boinc  14110720 Nov 30 22:11 result.tar.gz
22:11:54 (5540): run_atlas exited; CPU time 326563.109026
22:11:54 (5540): called boinc_finish(0)

</stderr_txt>
]]>

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