Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:13:25 (2934163): wrapper (7.7.26015): starting
17:13:25 (2934163): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:13:25] Arguments: --nthreads 8
[2025-11-27 17:13:25] Threads: 8
[2025-11-27 17:13:25] Checking for CVMFS
[2025-11-27 17:13:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:13:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:13:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:13:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:13:27] 2.13.3.0 14106 32026 282812 153386 2 369 39296131 40960001 61500 16776704 0 405126678 99.751 265413734 47113 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 17:13:27] CVMFS is ok
[2025-11-27 17:13:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:13:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 17:13:27] Further information can be found at the LHC@home message board.
[2025-11-27 17:13:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:13:27] Checking for apptainer binary...
[2025-11-27 17:13:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:13:27] Running /usr/bin/apptainer --version
[2025-11-27 17:13:27] apptainer version 1.4.4-1.el9
[2025-11-27 17:13:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:13:28] c8-7-5.aglt2.org
[2025-11-27 17:13:28] apptainer works
[2025-11-27 17:13:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:13:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:13:28] Starting ATLAS job with PandaID=6898688519
[2025-11-27 17:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:38:18]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:38:18] 2025-11-28 07:37:17,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:38:18] 2025-11-28 07:37:20,356 | INFO     | monitor loop #1837: job 0:6898688519 is in state 'finished'
[2025-11-28 02:38:18] 2025-11-28 07:37:20,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:38:18] 2025-11-28 07:37:20,537 | INFO     | PID=2967838 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:38:18] 2025-11-28 07:37:20,537 | INFO     | .. there are 101 such processes running
[2025-11-28 02:38:18] 2025-11-28 07:37:21,539 | INFO     | time since job start (33730s) is within the limit (172800.0s)
[2025-11-28 02:38:18] 2025-11-28 07:37:22,868 | INFO     | monitor loop #1838: job 0:6898688519 is in state 'finished'
[2025-11-28 02:38:18] 2025-11-28 07:37:22,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:38:18] 2025-11-28 07:37:23,548 | INFO     | time since job start (33732s) is within the limit (172800.0s)
[2025-11-28 02:38:18] 2025-11-28 07:37:25,377 | INFO     | monitor loop #1839: job 0:6898688519 is in state 'finished'
[2025-11-28 02:38:18] 2025-11-28 07:37:25,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:38:18] 2025-11-28 07:37:25,589 | INFO     | time since job start (33734s) is within the limit (172800.0s)
[2025-11-28 02:38:18] 2025-11-28 07:37:27,603 | INFO     | time since job start (33736s) is within the limit (172800.0s)
[2025-11-28 02:38:18] 2025-11-28 07:37:27,894 | INFO     | monitor loop #1840: job 0:6898688519 is in state 'finished'
[2025-11-28 02:38:18] 2025-11-28 07:37:27,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,415 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 02:38:18] 2025-11-28 07:37:28,424 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9893828124987
[2025-11-28 02:38:18] 2025-11-28 07:37:28,449 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6898688519/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,449 | INFO     | extracted standard info from prmon json
[2025-11-28 02:38:18] 2025-11-28 07:37:28,449 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:38:18] 2025-11-28 07:37:28,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:38:18] 2025-11-28 07:37:28,462 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:38:18] 2025-11-28 07:37:28,470 | INFO     | sum of square deviations: 51309192840.85242
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | sum of deviations: 265893356916.95062
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | mean x: 1764298631.9836066
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | mean y: 2737329.2167577413
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | intersect: -9140171765.400589
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | chi2: 29.669429023077043
[2025-11-28 02:38:18] 2025-11-28 07:37:28,474 | INFO     | sum of square deviations: 49920196605.971
[2025-11-28 02:38:18] 2025-11-28 07:37:28,494 | INFO     | sum of deviations: 432633883418.4618
[2025-11-28 02:38:18] 2025-11-28 07:37:28,494 | INFO     | mean x: 1764298479.4926472
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | mean y: 2755639.9908088236
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | intersect: -15287554787.209969
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | chi2: 26.39527427567937
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | current chi2=26.39527427567937 (change=11.035449131329822 %)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | right removable region: 543
[2025-11-28 02:38:18] 2025-11-28 07:37:28,495 | INFO     | sum of square deviations: 49919867205.97098
[2025-11-28 02:38:18] 2025-11-28 07:37:28,523 | INFO     | sum of deviations: 44961142112.01439
[2025-11-28 02:38:18] 2025-11-28 07:37:28,523 | INFO     | mean x: 1764298784.4926472
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | mean y: 2761577.5036764704
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | intersect: -1586282881.4956057
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | chi2: 24.880887994289935
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | current chi2=24.880887994289935 (change=16.139646722094163 %)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | left removable region: 10
[2025-11-28 02:38:18] 2025-11-28 07:37:28,524 | INFO     | sum of square deviations: 46952484496.90802
[2025-11-28 02:38:18] 2025-11-28 07:37:28,533 | INFO     | sum of deviations: 55017715064.07133
[2025-11-28 02:38:18] 2025-11-28 07:37:28,533 | INFO     | mean x: 1764298754.0131333
[2025-11-28 02:38:18] 2025-11-28 07:37:28,533 | INFO     | mean y: 2806913.4183864915
[2025-11-28 02:38:18] 2025-11-28 07:37:28,533 | INFO     | intersect: -2064553039.4416773
[2025-11-28 02:38:18] 2025-11-28 07:37:28,533 | INFO     | chi2: 17.1156583544209
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | current memory leak: 1.17 B/s (using 533 data points, chi2=17.12)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | could have reported an average CPU frequency of 3796 MHz (22 samples)
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | ..............................
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | . Timing measurements:
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | . get job = 0 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,534 | INFO     | . initial setup = 6 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | . payload setup = 58 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | . stage-in = 0 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | . payload execution = 33517 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | . stage-out = 6 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | . log creation = 1 s
[2025-11-28 02:38:18] 2025-11-28 07:37:28,543 | INFO     | ..............................
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | 
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | job summary report
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | --------------------------------------------------
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | PanDA job id: 6898688519
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | task id: 47556161
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | errors: (none)
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | pilot state: finished 
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | transexitcode: 0
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | exeerrorcode: 0
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | exeerrordiag: 
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | exitcode: 0
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | exitmsg: OK
[2025-11-28 02:38:18] 2025-11-28 07:37:29,021 | INFO     | cpuconsumptiontime: 133142 s
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | nevents: 1000
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | neventsw: 0
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | pid: 3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | pgrp: 3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | corecount: 8
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | event service: False
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | sizes: {0: 2284145, 1: 2284344, 12: 2284344, 23: 2284372, 33: 2284400, 44: 2284456, 47: 2284874, 55: 2284930, 33581: 2324635, 33588: 2333629, 33591: 2333685, 33630
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | --------------------------------------------------
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | 
[2025-11-28 02:38:18] 2025-11-28 07:37:29,022 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | job 6898688519 has completed (purged errors)
[2025-11-28 02:38:18] 2025-11-28 07:37:29,302 | INFO     | overall cleanup function is called
[2025-11-28 02:38:18] 2025-11-28 07:37:30,375 | INFO     | --- collectZombieJob: --- 10, [3008603]
[2025-11-28 02:38:18] 2025-11-28 07:37:30,375 | INFO     | zombie collector waiting for pid 3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:30,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:38:18] 2025-11-28 07:37:30,375 | INFO     | collected zombie processes
[2025-11-28 02:38:18] 2025-11-28 07:37:30,375 | INFO     | will attempt to kill all subprocesses of pid=3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:32,367 | INFO     | process IDs to be killed: [3008603] (in reverse order)
[2025-11-28 02:38:18] 2025-11-28 07:37:34,159 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:38:18] 2025-11-28 07:37:34,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:38:18] 2025-11-28 07:37:34,336 | INFO     | did not find any defunct processes belonging to 3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:34,435 | INFO     | did not find any defunct processes belonging to 3008603
[2025-11-28 02:38:18] 2025-11-28 07:37:34,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:38:18] 2025-11-28 07:37:34,451 | INFO     | ready for new job
[2025-11-28 02:38:18] 2025-11-28 07:37:34,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:38:18] 2025-11-28 07:37:34,456 | INFO     | ***************************************
[2025-11-28 02:38:18] 2025-11-28 07:37:34,457 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:38:18] 2025-11-28 07:37:34,457 | INFO     | ***************************************
[2025-11-28 02:38:18] 2025-11-28 07:37:34,457 | INFO     | 
[2025-11-28 02:38:18] 2025-11-28 07:37:34,469 | INFO     | architecture information:
[2025-11-28 02:38:18] 2025-11-28 07:37:34,478 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:38:18] 2025-11-28 07:37:34,534 | INFO     | cat /etc/os-release:
[2025-11-28 02:38:18] NAME="CentOS Linux"
[2025-11-28 02:38:18] VERSION="7 (Core)"
[2025-11-28 02:38:18] ID="centos"
[2025-11-28 02:38:18] ID_LIKE="rhel fedora"
[2025-11-28 02:38:18] VERSION_ID="7"
[2025-11-28 02:38:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:38:18] ANSI_COLOR="0;31"
[2025-11-28 02:38:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:38:18] HOME_URL="https://www.centos.org/"
[2025-11-28 02:38:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:38:18] 
[2025-11-28 02:38:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:38:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:38:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:38:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:38:18] 
[2025-11-28 02:38:18] 2025-11-28 07:37:34,534 | INFO     | ***************************************
[2025-11-28 02:38:18] 2025-11-28 07:37:35,037 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | INFO     | sufficient remaining disk space (161664204800 B)
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | INFO     | update_server=False
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:38:18] 2025-11-28 07:37:35,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:38:18] 2025-11-28 07:37:35,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 02:38:18] 2025-11-28 07:37:35,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 02:38:18] 2025-11-28 07:37:35,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:38:18] 2025-11-28 07:37:35,422 | INFO     | will abort loop
[2025-11-28 02:38:18] 2025-11-28 07:37:35,586 | INFO     | all payload control threads have been joined
[2025-11-28 02:38:18] 2025-11-28 07:37:35,690 | INFO     | all job control threads have been joined
[2025-11-28 02:38:18] 2025-11-28 07:37:36,124 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,133 | INFO     | all data control threads have been joined
[2025-11-28 02:38:18] 2025-11-28 07:37:36,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,432 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:38:18] 2025-11-28 07:37:36,596 | INFO     | [payload] control thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,608 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,692 | INFO     | [job] validate thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,696 | INFO     | [job] control thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:36,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,070 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,105 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,126 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,146 | INFO     | [data] control thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,171 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,206 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:37,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:38:18] 2025-11-28 07:37:38,839 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:37:40,615 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:38:18] 2025-11-28 07:38:03,343 | INFO     | PID=2967838 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:38:18] 2025-11-28 07:38:03,343 | INFO     | .. there are 101 such processes running
[2025-11-28 02:38:18] 2025-11-28 07:38:03,344 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:38:18] 2025-11-28 07:38:03,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:38:18] 2025-11-28 07:38:03,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:38:18] 2025-11-28 07:38:10,755 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:38:18] 2025-11-28 07:38:11,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323667797824)>', '<ExcThread(monitor, started 140323317589760)>']
[2025-11-28 02:38:18] 2025-11-28 07:38:12,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:38:18] 2025-11-28 07:38:12,416 | INFO     | [monitor] control thread has ended
[2025-11-28 02:38:18] 2025-11-28 07:38:16,787 | INFO     | all workflow threads have been joined
[2025-11-28 02:38:18] 2025-11-28 07:38:16,787 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:38:18] 2025-11-28 07:38:16,787 | INFO     | traces error code: 0
[2025-11-28 02:38:18] 2025-11-28 07:38:16,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:38:18] 2025-11-28 07:38:17,004 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:38:18] 2025-11-28 07:38:17,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:38:18] 2025-11-28 07:38:17,026 [wrapper] pilotpid: 2967838
[2025-11-28 02:38:18] 2025-11-28 07:38:17,039 [wrapper] Pilot exit status: 0
[2025-11-28 02:38:18] 2025-11-28 07:38:17,181 [wrapper] pandaids: 6898688519
[2025-11-28 02:38:18] 2025-11-28 07:38:17,496 [wrapper] cleanup supervisor_pilot 3764921 2967839
[2025-11-28 02:38:18] 2025-11-28 07:38:17,540 [wrapper] Test setup, not cleaning
[2025-11-28 02:38:18] 2025-11-28 07:38:17,569 [wrapper] apfmon messages muted
[2025-11-28 02:38:18] 2025-11-28 07:38:17,627 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:38:18] 2025-11-28 07:38:17,684 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:38:18]  *** Error codes and diagnostics ***
[2025-11-28 02:38:18]     "exeErrorCode": 0,
[2025-11-28 02:38:18]     "exeErrorDiag": "",
[2025-11-28 02:38:18]     "pilotErrorCode": 0,
[2025-11-28 02:38:18]     "pilotErrorDiag": "",
[2025-11-28 02:38:18]  *** Listing of results directory ***
[2025-11-28 02:38:18] total 1307108
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 02:38:18] -rwx------. 1 boincer umatlas     36292 Nov 26 11:39 runpilot2-wrapper.sh
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:41 queuedata.json
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas       100 Nov 27 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:38:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 17:13 run_atlas
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas       105 Nov 27 17:13 job.xml
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas 410744785 Nov 27 17:13 EVNT.47483658._002684.pool.root.1
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 17:13 start_atlas.sh
[2025-11-28 02:38:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 17:13 shared
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 17:13 input.tar.gz
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas         0 Nov 27 17:13 boinc_lockfile
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas      2787 Nov 27 17:13 pandaJob.out
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas        57 Nov 27 17:13 setup.sh.local
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas    991540 Nov 27 17:15 agis_schedconf.cvmfs.json
[2025-11-28 02:38:18] drwx------. 5 boincer umatlas      4096 Nov 27 17:15 pilot3
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas       533 Nov 28 02:10 boinc_task_state.xml
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas 912238751 Nov 28 02:35 HITS.47556161._006662.pool.root.1
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas      1052 Nov 28 02:36 memory_monitor_summary.json
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas   1516240 Nov 28 02:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas   1778587 Nov 28 02:36 log.47556161._006662.job.log.tgz.1
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas      7173 Nov 28 02:36 init_data.xml
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas      8579 Nov 28 02:37 heartbeat.json
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas        95 Nov 28 02:38 pilot_heartbeat.json
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 02:38 boinc_mmap_file
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas        29 Nov 28 02:38 wrapper_checkpoint.txt
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas      5012 Nov 28 02:38 pilotlog.txt
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas   4003470 Nov 28 02:38 log.47556161._006662.job.log.1
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas       353 Nov 28 02:38 output.list
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas       620 Nov 28 02:38 runtime_log
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas   5806080 Nov 28 02:38 result.tar.gz
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas      9333 Nov 28 02:38 runtime_log.err
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas       658 Nov 28 02:38 KUfLDmwiXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeCKKDmPQ9AWn.diag
[2025-11-28 02:38:18] -rw-r--r--. 1 boincer umatlas     21888 Nov 28 02:38 stderr.txt
[2025-11-28 02:38:18] HITS file was successfully produced:
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas 912238751 Nov 28 02:35 shared/HITS.pool.root.1
[2025-11-28 02:38:18]  *** Contents of shared directory: ***
[2025-11-28 02:38:18] total 1298256
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas 410744785 Nov 27 17:13 ATLAS.root_0
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 17:13 start_atlas.sh
[2025-11-28 02:38:18] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 17:13 input.tar.gz
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas 912238751 Nov 28 02:35 HITS.pool.root.1
[2025-11-28 02:38:18] -rw-------. 1 boincer umatlas   5806080 Nov 28 02:38 result.tar.gz
02:38:19 (2934163): run_atlas exited; CPU time 133714.937775
02:38:19 (2934163): called boinc_finish(0)

</stderr_txt>
]]>

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