Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
21:01:18 (39121): wrapper (7.7.26015): starting
21:01:18 (39121): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 21:01:18] Arguments: --nthreads 8
[2025-11-27 21:01:18] Threads: 8
[2025-11-27 21:01:18] Checking for CVMFS
[2025-11-27 21:01:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:01:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:01:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:01:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:01:18] 2.13.3.0 4370 0 39280 153384 3 87 3449085 4096000 512 130560 0 85974 99.977 2827 3052 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-27 21:01:18] CVMFS is ok
[2025-11-27 21:01:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:01:18] Checking for apptainer binary...
[2025-11-27 21:01:18] apptainer is not installed, using version from CVMFS
[2025-11-27 21:01:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:01:18] senture-c621e-l
[2025-11-27 21:01:18] apptainer works
[2025-11-27 21:01:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 21:01:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 21:01:18] Starting ATLAS job with PandaID=6898688482
[2025-11-27 21:01:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:04:31]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:04:31] 2025-11-28 05:03:57,649 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 05:04:31] 2025-11-28 05:03:57,652 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-28 05:04:31] 2025-11-28 05:03:57,658 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6898688482/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,659 | INFO     | extracted standard info from prmon json
[2025-11-28 05:04:31] 2025-11-28 05:03:57,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:04:31] 2025-11-28 05:03:57,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:04:31] 2025-11-28 05:03:57,663 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:04:31] 2025-11-28 05:03:57,664 | INFO     | sum of square deviations: 33232087783.1577
[2025-11-28 05:04:31] 2025-11-28 05:03:57,666 | INFO     | sum of deviations: 367130933333.48456
[2025-11-28 05:04:31] 2025-11-28 05:03:57,666 | INFO     | mean x: 1764291766.0421052
[2025-11-28 05:04:31] 2025-11-28 05:03:57,666 | INFO     | mean y: 2854141.6757894736
[2025-11-28 05:04:31] 2025-11-28 05:03:57,666 | INFO     | intersect: -19488129601.689648
[2025-11-28 05:04:31] 2025-11-28 05:03:57,667 | INFO     | chi2: 4.64678024851861
[2025-11-28 05:04:31] 2025-11-28 05:03:57,667 | INFO     | sum of square deviations: 32193665110.64883
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | sum of deviations: 504320709332.893
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | mean x: 1764291613.5425532
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | mean y: 2874252.455319149
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | intersect: -27635134497.208363
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | chi2: 2.02138664061568
[2025-11-28 05:04:31] 2025-11-28 05:03:57,670 | INFO     | current chi2=2.02138664061568 (change=56.49919874605439 %)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,671 | INFO     | sum of square deviations: 31177103313.139877
[2025-11-28 05:04:31] 2025-11-28 05:03:57,673 | INFO     | sum of deviations: 506389550730.61285
[2025-11-28 05:04:31] 2025-11-28 05:03:57,673 | INFO     | mean x: 1764291461.0430107
[2025-11-28 05:04:31] 2025-11-28 05:03:57,673 | INFO     | mean y: 2874546.019354839
[2025-11-28 05:04:31] 2025-11-28 05:03:57,673 | INFO     | intersect: -28653372037.956493
[2025-11-28 05:04:31] 2025-11-28 05:03:57,674 | INFO     | chi2: 1.920795887807779
[2025-11-28 05:04:31] 2025-11-28 05:03:57,674 | INFO     | current chi2=1.920795887807779 (change=4.976324211644282 %)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,674 | INFO     | right removable region: 464
[2025-11-28 05:04:31] 2025-11-28 05:03:57,674 | INFO     | sum of square deviations: 32193652910.64884
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | sum of deviations: 257976892323.81894
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | mean x: 1764291918.5425532
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | mean y: 2870117.134042553
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | intersect: -14134902553.797787
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | chi2: 2.8697037538472
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | current chi2=2.8697037538472 (change=38.24317913974822 %)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,677 | INFO     | sum of square deviations: 31177078913.139877
[2025-11-28 05:04:31] 2025-11-28 05:03:57,680 | INFO     | sum of deviations: 230368286683.06424
[2025-11-28 05:04:31] 2025-11-28 05:03:57,680 | INFO     | mean x: 1764292071.0430107
[2025-11-28 05:04:31] 2025-11-28 05:03:57,680 | INFO     | mean y: 2874255.8967741937
[2025-11-28 05:04:31] 2025-11-28 05:03:57,680 | INFO     | intersect: -13033527991.633757
[2025-11-28 05:04:31] 2025-11-28 05:03:57,681 | INFO     | chi2: 2.829175628936194
[2025-11-28 05:04:31] 2025-11-28 05:03:57,681 | INFO     | current chi2=2.829175628936194 (change=1.4122755652625478 %)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,681 | INFO     | left removable region: 20
[2025-11-28 05:04:31] 2025-11-28 05:03:57,681 | INFO     | sum of square deviations: 27140995490.186882
[2025-11-28 05:04:31] 2025-11-28 05:03:57,683 | INFO     | sum of deviations: 325890682154.153
[2025-11-28 05:04:31] 2025-11-28 05:03:57,684 | INFO     | mean x: 1764292040.5427928
[2025-11-28 05:04:31] 2025-11-28 05:03:57,684 | INFO     | mean y: 2902054.3603603602
[2025-11-28 05:04:31] 2025-11-28 05:03:57,684 | INFO     | intersect: -21181521222.211002
[2025-11-28 05:04:31] 2025-11-28 05:03:57,684 | INFO     | chi2: 0.05726142095682843
[2025-11-28 05:04:31] 2025-11-28 05:03:57,684 | INFO     | current memory leak: 12.01 B/s (using 444 data points, chi2=0.06)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | ..............................
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . Timing measurements:
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . get job = 0 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . initial setup = 1 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . payload setup = 4 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . stage-in = 0 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . payload execution = 28921 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . stage-out = 1 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | . log creation = 0 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,685 | INFO     | ..............................
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | 
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | job summary report
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | --------------------------------------------------
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | PanDA job id: 6898688482
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | task id: 47556161
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | errors: (none)
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | pilot state: finished 
[2025-11-28 05:04:31] 2025-11-28 05:03:57,982 | INFO     | transexitcode: 0
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | exeerrorcode: 0
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | exeerrordiag: 
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | exitcode: 0
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | exitmsg: OK
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | cpuconsumptiontime: 225999 s
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | nevents: 1000
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | neventsw: 0
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | pid: 123813
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | pgrp: 123813
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | corecount: 8
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | event service: False
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | sizes: {0: 2284152, 1: 2284351, 4: 2284613, 11: 2284641, 28929: 2322522, 28931: 2331530, 28932: 2331714, 28936: 2331960}
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | --------------------------------------------------
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | 
[2025-11-28 05:04:31] 2025-11-28 05:03:57,983 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-11-28 05:04:31] 2025-11-28 05:03:58,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | job 6898688482 has completed (purged errors)
[2025-11-28 05:04:31] 2025-11-28 05:03:58,005 | INFO     | overall cleanup function is called
[2025-11-28 05:04:31] 2025-11-28 05:03:58,612 | INFO     | PID=59005 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:04:31] 2025-11-28 05:03:58,612 | INFO     | .. there are 7 such processes running
[2025-11-28 05:04:31] 2025-11-28 05:03:59,018 | INFO     | --- collectZombieJob: --- 10, [123813]
[2025-11-28 05:04:31] 2025-11-28 05:03:59,018 | INFO     | zombie collector waiting for pid 123813
[2025-11-28 05:04:31] 2025-11-28 05:03:59,018 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:04:31] 2025-11-28 05:03:59,018 | INFO     | collected zombie processes
[2025-11-28 05:04:31] 2025-11-28 05:03:59,018 | INFO     | will attempt to kill all subprocesses of pid=123813
[2025-11-28 05:04:31] 2025-11-28 05:03:59,155 | INFO     | process IDs to be killed: [123813] (in reverse order)
[2025-11-28 05:04:31] 2025-11-28 05:03:59,235 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:04:31] 2025-11-28 05:03:59,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:04:31] 2025-11-28 05:03:59,240 | INFO     | did not find any defunct processes belonging to 123813
[2025-11-28 05:04:31] 2025-11-28 05:03:59,244 | INFO     | did not find any defunct processes belonging to 123813
[2025-11-28 05:04:31] 2025-11-28 05:03:59,246 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:04:31] 2025-11-28 05:03:59,246 | INFO     | ready for new job
[2025-11-28 05:04:31] 2025-11-28 05:03:59,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:04:31] 2025-11-28 05:03:59,248 | INFO     | ***************************************
[2025-11-28 05:04:31] 2025-11-28 05:03:59,249 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:04:31] 2025-11-28 05:03:59,249 | INFO     | ***************************************
[2025-11-28 05:04:31] 2025-11-28 05:03:59,249 | INFO     | 
[2025-11-28 05:04:31] 2025-11-28 05:03:59,251 | INFO     | pilot is running in a VM
[2025-11-28 05:04:31] 2025-11-28 05:03:59,251 | INFO     | architecture information:
[2025-11-28 05:04:31] 2025-11-28 05:03:59,251 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:04:31] 2025-11-28 05:03:59,265 | INFO     | cat /etc/os-release:
[2025-11-28 05:04:31] NAME="CentOS Linux"
[2025-11-28 05:04:31] VERSION="7 (Core)"
[2025-11-28 05:04:31] ID="centos"
[2025-11-28 05:04:31] ID_LIKE="rhel fedora"
[2025-11-28 05:04:31] VERSION_ID="7"
[2025-11-28 05:04:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:04:31] ANSI_COLOR="0;31"
[2025-11-28 05:04:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:04:31] HOME_URL="https://www.centos.org/"
[2025-11-28 05:04:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:04:31] 
[2025-11-28 05:04:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:04:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:04:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:04:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:04:31] 
[2025-11-28 05:04:31] 2025-11-28 05:03:59,265 | INFO     | ***************************************
[2025-11-28 05:04:31] 2025-11-28 05:03:59,768 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | INFO     | sufficient remaining disk space (110985478144 B)
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | INFO     | update_server=False
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:04:31] 2025-11-28 05:03:59,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:04:31] 2025-11-28 05:03:59,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:04:31] 2025-11-28 05:03:59,786 | INFO     | aborting loop
[2025-11-28 05:04:31] 2025-11-28 05:03:59,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:04:31] 2025-11-28 05:03:59,888 | INFO     | all payload control threads have been joined
[2025-11-28 05:04:31] 2025-11-28 05:04:00,033 | INFO     | all job control threads have been joined
[2025-11-28 05:04:31] 2025-11-28 05:04:00,701 | INFO     | all data control threads have been joined
[2025-11-28 05:04:31] 2025-11-28 05:04:00,790 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:00,791 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:00,851 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:00,893 | INFO     | [payload] control thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,039 | INFO     | [job] control thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,188 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,488 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,706 | INFO     | [data] control thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,790 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:01,950 | INFO     | [job] validate thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:02,187 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:02,243 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:02,253 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:02,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:04:31] 2025-11-28 05:04:03,750 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:03,788 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:04:31] 2025-11-28 05:04:14,080 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:04:31] 2025-11-28 05:04:15,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132814686918464)>', '<ExcThread(monitor, started 132813877671680)>']
[2025-11-28 05:04:31] 2025-11-28 05:04:20,462 | INFO     | all workflow threads have been joined
[2025-11-28 05:04:31] 2025-11-28 05:04:20,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:04:31] 2025-11-28 05:04:20,462 | INFO     | traces error code: 0
[2025-11-28 05:04:31] 2025-11-28 05:04:20,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:04:31] 2025-11-28 05:04:30,888 | INFO     | PID=59005 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:04:31] 2025-11-28 05:04:30,888 | INFO     | .. there are 7 such processes running
[2025-11-28 05:04:31] 2025-11-28 05:04:30,889 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:04:31] 2025-11-28 05:04:30,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:04:31] 2025-11-28 05:04:30,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:04:31] 2025-11-28 05:04:30,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:04:31] 2025-11-28 05:04:30,889 | INFO     | [monitor] control thread has ended
[2025-11-28 05:04:31] 2025-11-28 05:04:31,009 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:04:31] 2025-11-28 05:04:31,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:04:31] 2025-11-28 05:04:31,015 [wrapper] pilotpid: 59005
[2025-11-28 05:04:31] 2025-11-28 05:04:31,017 [wrapper] Pilot exit status: 0
[2025-11-28 05:04:31] 2025-11-28 05:04:31,027 [wrapper] pandaids: 6898688482
[2025-11-28 05:04:31] 2025-11-28 05:04:31,073 [wrapper] cleanup supervisor_pilot  495549 59008
[2025-11-28 05:04:31] 2025-11-28 05:04:31,076 [wrapper] Test setup, not cleaning
[2025-11-28 05:04:31] 2025-11-28 05:04:31,079 [wrapper] apfmon messages muted
[2025-11-28 05:04:31] 2025-11-28 05:04:31,081 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:04:31] 2025-11-28 05:04:31,084 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:04:31]  *** Error codes and diagnostics ***
[2025-11-28 05:04:31]     "exeErrorCode": 0,
[2025-11-28 05:04:31]     "exeErrorDiag": "",
[2025-11-28 05:04:31]     "pilotErrorCode": 0,
[2025-11-28 05:04:31]     "pilotErrorDiag": "",
[2025-11-28 05:04:31]  *** Listing of results directory ***
[2025-11-28 05:04:31] total 1327288
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc    576529 Nov 26 16:12 pilot3.tar.gz
[2025-11-28 05:04:31] -rwx------ 1 boinc boinc     36292 Nov 26 16:39 runpilot2-wrapper.sh
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc      5112 Nov 26 16:41 queuedata.json
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:04:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:01 run_atlas
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:01 job.xml
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc 413141820 Nov 27 21:01 EVNT.47483658._002680.pool.root.1
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc    590105 Nov 27 21:01 input.tar.gz
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:01 start_atlas.sh
[2025-11-28 05:04:31] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:01 shared
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:01 boinc_setup_complete
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc      6662 Nov 27 21:01 init_data.xml
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:01 boinc_lockfile
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc      2787 Nov 27 21:01 pandaJob.out
[2025-11-28 05:04:31] -rw------- 1 boinc boinc        50 Nov 27 21:01 setup.sh.local
[2025-11-28 05:04:31] -rw------- 1 boinc boinc    991500 Nov 27 21:01 agis_schedconf.cvmfs.json
[2025-11-28 05:04:31] drwx------ 5 boinc boinc      4096 Nov 27 21:01 pilot3
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc       533 Nov 28 04:58 boinc_task_state.xml
[2025-11-28 05:04:31] -rw------- 1 boinc boinc 930469619 Nov 28 05:03 HITS.47556161._006625.pool.root.1
[2025-11-28 05:04:31] -rw------- 1 boinc boinc      1044 Nov 28 05:03 memory_monitor_summary.json
[2025-11-28 05:04:31] -rw------- 1 boinc boinc   1516240 Nov 28 05:03 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:04:31] -rw------- 1 boinc boinc   1752913 Nov 28 05:03 log.47556161._006625.job.log.tgz.1
[2025-11-28 05:04:31] -rw------- 1 boinc boinc      8594 Nov 28 05:03 heartbeat.json
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc        29 Nov 28 05:04 wrapper_checkpoint.txt
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:04 boinc_mmap_file
[2025-11-28 05:04:31] -rw------- 1 boinc boinc       820 Nov 28 05:04 pilotlog.txt
[2025-11-28 05:04:31] -rw------- 1 boinc boinc        95 Nov 28 05:04 pilot_heartbeat.json
[2025-11-28 05:04:31] -rw------- 1 boinc boinc   4051715 Nov 28 05:04 log.47556161._006625.job.log.1
[2025-11-28 05:04:31] -rw------- 1 boinc boinc       353 Nov 28 05:04 output.list
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:04 runtime_log
[2025-11-28 05:04:31] -rw------- 1 boinc boinc   5826560 Nov 28 05:04 result.tar.gz
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc      9425 Nov 28 05:04 runtime_log.err
[2025-11-28 05:04:31] -rw------- 1 boinc boinc       659 Nov 28 05:04 1WdKDmwiXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7BKKDmmXaVHn.diag
[2025-11-28 05:04:31] -rw-r--r-- 1 boinc boinc     21061 Nov 28 05:04 stderr.txt
[2025-11-28 05:04:31] HITS file was successfully produced:
[2025-11-28 05:04:31] -rw------- 1 boinc boinc 930469619 Nov 28 05:03 shared/HITS.pool.root.1
[2025-11-28 05:04:31]  *** Contents of shared directory: ***
[2025-11-28 05:04:31] total 1318420
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc 413141820 Nov 27 21:01 ATLAS.root_0
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc    590105 Nov 27 21:01 input.tar.gz
[2025-11-28 05:04:31] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:01 start_atlas.sh
[2025-11-28 05:04:31] -rw------- 1 boinc boinc 930469619 Nov 28 05:03 HITS.pool.root.1
[2025-11-28 05:04:31] -rw------- 1 boinc boinc   5826560 Nov 28 05:04 result.tar.gz
05:04:32 (39121): run_atlas exited; CPU time 226534.999744
05:04:32 (39121): called boinc_finish(0)

</stderr_txt>
]]>

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