Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:59:44 (2643435): wrapper (7.7.26015): starting
20:59:44 (2643435): wrapper: running run_atlas (--nthreads 4)
[2025-12-01 20:59:44] Arguments: --nthreads 4
[2025-12-01 20:59:44] Threads: 4
[2025-12-01 20:59:44] Checking for CVMFS
[2025-12-01 20:59:44] No cvmfs_config command found, will try listing directly
[2025-12-01 20:59:44] CVMFS is ok
[2025-12-01 20:59:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 20:59:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 20:59:44] Further information can be found at the LHC@home message board.
[2025-12-01 20:59:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 20:59:44] Checking for apptainer binary...
[2025-12-01 20:59:44] which: no apptainer in ((null))
[2025-12-01 20:59:44] apptainer is not installed, using version from CVMFS
[2025-12-01 20:59:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 20:59:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-01 20:59:45] apptainer works
[2025-12-01 20:59:45] Set ATHENA_PROC_NUMBER=4
[2025-12-01 20:59:45] Set ATHENA_CORE_NUMBER=4
[2025-12-01 20:59:45] Starting ATLAS job with PandaID=6898378690
[2025-12-01 20:59:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:48:43]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:48:43] 2025-12-02 13:43:06,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:48:43] 2025-12-02 13:43:06,433 | INFO     | PID=2647286 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-02 14:48:43] 2025-12-02 13:43:06,434 | INFO     | .. there are 4 such processes running
[2025-12-02 14:48:43] 2025-12-02 13:43:06,874 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 14:48:43] 2025-12-02 13:43:06,885 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2763.8656875000006
[2025-12-02 14:48:43] 2025-12-02 13:43:06,900 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6898378690/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:48:43] 2025-12-02 13:43:06,901 | INFO     | extracted standard info from prmon json
[2025-12-02 14:48:43] 2025-12-02 13:43:06,901 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:48:43] 2025-12-02 13:43:06,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:48:43] 2025-12-02 13:43:06,922 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:48:43] 2025-12-02 13:43:06,924 | INFO     | sum of square deviations: 354873100257.5
[2025-12-02 14:48:43] 2025-12-02 13:43:06,947 | INFO     | sum of deviations: 1000978020201.0006
[2025-12-02 14:48:43] 2025-12-02 13:43:06,948 | INFO     | mean x: 1764651095.5
[2025-12-02 14:48:43] 2025-12-02 13:43:06,948 | INFO     | mean y: 2284184.6826003822
[2025-12-02 14:48:43] 2025-12-02 13:43:06,948 | INFO     | intersect: -4975204835.0188465
[2025-12-02 14:48:43] 2025-12-02 13:43:06,949 | INFO     | chi2: 4.954325303830462
[2025-12-02 14:48:43] 2025-12-02 13:43:06,951 | INFO     | sum of square deviations: 349808382040.0
[2025-12-02 14:48:43] 2025-12-02 13:43:06,972 | INFO     | sum of deviations: 1276307777276.0002
[2025-12-02 14:48:43] 2025-12-02 13:43:06,973 | INFO     | mean x: 1764650943.0
[2025-12-02 14:48:43] 2025-12-02 13:43:06,973 | INFO     | mean y: 2292474.5187319885
[2025-12-02 14:48:43] 2025-12-02 13:43:06,973 | INFO     | intersect: -6436197391.258093
[2025-12-02 14:48:43] 2025-12-02 13:43:06,974 | INFO     | chi2: 1.9314794797352528
[2025-12-02 14:48:43] 2025-12-02 13:43:06,974 | INFO     | current chi2=1.9314794797352528 (change=61.01427820571411 %)
[2025-12-02 14:48:43] 2025-12-02 13:43:06,976 | INFO     | sum of square deviations: 344792083335.0
[2025-12-02 14:48:43] 2025-12-02 13:43:06,997 | INFO     | sum of deviations: 1326236335195.5002
[2025-12-02 14:48:43] 2025-12-02 13:43:06,997 | INFO     | mean x: 1764650790.5
[2025-12-02 14:48:43] 2025-12-02 13:43:06,998 | INFO     | mean y: 2293990.8349420847
[2025-12-02 14:48:43] 2025-12-02 13:43:06,998 | INFO     | intersect: -6785402451.193526
[2025-12-02 14:48:43] 2025-12-02 13:43:06,999 | INFO     | chi2: 1.7589900716344762
[2025-12-02 14:48:43] 2025-12-02 13:43:06,999 | INFO     | current chi2=1.7589900716344762 (change=8.930429233678407 %)
[2025-12-02 14:48:43] 2025-12-02 13:43:06,999 | INFO     | right removable region: 1035
[2025-12-02 14:48:43] 2025-12-02 13:43:07,001 | INFO     | sum of square deviations: 349808382040.0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,024 | INFO     | sum of deviations: 817997342987.9979
[2025-12-02 14:48:43] 2025-12-02 13:43:07,025 | INFO     | mean x: 1764651248.0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,025 | INFO     | mean y: 2289685.246878002
[2025-12-02 14:48:43] 2025-12-02 13:43:07,025 | INFO     | intersect: -4124198147.1670265
[2025-12-02 14:48:43] 2025-12-02 13:43:07,027 | INFO     | chi2: 3.2804172023819715
[2025-12-02 14:48:43] 2025-12-02 13:43:07,027 | INFO     | current chi2=3.2804172023819715 (change=33.786802415947534 %)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,028 | INFO     | sum of square deviations: 344792083335.0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,053 | INFO     | sum of deviations: 800994469466.5002
[2025-12-02 14:48:43] 2025-12-02 13:43:07,054 | INFO     | mean x: 1764651400.5
[2025-12-02 14:48:43] 2025-12-02 13:43:07,054 | INFO     | mean y: 2290201.7287644786
[2025-12-02 14:48:43] 2025-12-02 13:43:07,054 | INFO     | intersect: -4097212311.9744887
[2025-12-02 14:48:43] 2025-12-02 13:43:07,056 | INFO     | chi2: 3.279113554908854
[2025-12-02 14:48:43] 2025-12-02 13:43:07,056 | INFO     | current chi2=3.279113554908854 (change=0.03974029498963714 %)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,056 | INFO     | left removable region: 20
[2025-12-02 14:48:43] 2025-12-02 13:43:07,058 | INFO     | sum of square deviations: 324247121380.0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,081 | INFO     | sum of deviations: 1077059258332.9998
[2025-12-02 14:48:43] 2025-12-02 13:43:07,081 | INFO     | mean x: 1764651370.0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,081 | INFO     | mean y: 2301494.7615763545
[2025-12-02 14:48:43] 2025-12-02 13:43:07,082 | INFO     | intersect: -5859382296.599124
[2025-12-02 14:48:43] 2025-12-02 13:43:07,083 | INFO     | chi2: 0.05038581950066669
[2025-12-02 14:48:43] 2025-12-02 13:43:07,084 | INFO     | current memory leak: 3.32 B/s (using 1015 data points, chi2=0.05)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,085 | INFO     | could have reported an average CPU frequency of 2664 MHz (39 samples)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,085 | INFO     | ..............................
[2025-12-02 14:48:43] 2025-12-02 13:43:07,085 | INFO     | . Timing measurements:
[2025-12-02 14:48:43] 2025-12-02 13:43:07,085 | INFO     | . get job = 0 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,085 | INFO     | . initial setup = 1 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | . payload setup = 6 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | . stage-in = 0 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | . payload execution = 63754 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | . stage-out = 2 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | . log creation = 0 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,086 | INFO     | ..............................
[2025-12-02 14:48:43] 2025-12-02 13:43:07,201 | INFO     | 
[2025-12-02 14:48:43] 2025-12-02 13:43:07,201 | INFO     | job summary report
[2025-12-02 14:48:43] 2025-12-02 13:43:07,201 | INFO     | --------------------------------------------------
[2025-12-02 14:48:43] 2025-12-02 13:43:07,201 | INFO     | PanDA job id: 6898378690
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | task id: 47556161
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | errors: (none)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | pilot state: finished 
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | transexitcode: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | exeerrorcode: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | exeerrordiag: 
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | exitcode: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | exitmsg: OK
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | cpuconsumptiontime: 252485 s
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | nevents: 1000
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | neventsw: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | pid: 2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:07,202 | INFO     | pgrp: 2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | corecount: 4
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | event service: False
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | sizes: {0: 2284327, 5: 2284589, 11: 2284645, 63765: 2338958, 63767: 2347974, 63769: 2348030, 63776: 2348404}
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | --------------------------------------------------
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | 
[2025-12-02 14:48:43] 2025-12-02 13:43:07,203 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-02 14:48:43] 2025-12-02 13:43:07,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,225 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,225 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | job 6898378690 has completed (purged errors)
[2025-12-02 14:48:43] 2025-12-02 13:43:07,227 | INFO     | overall cleanup function is called
[2025-12-02 14:48:43] 2025-12-02 13:43:08,243 | INFO     | --- collectZombieJob: --- 10, [2654929]
[2025-12-02 14:48:43] 2025-12-02 13:43:08,243 | INFO     | zombie collector waiting for pid 2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:08,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:48:43] 2025-12-02 13:43:08,243 | INFO     | collected zombie processes
[2025-12-02 14:48:43] 2025-12-02 13:43:08,244 | INFO     | will attempt to kill all subprocesses of pid=2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:08,670 | INFO     | process IDs to be killed: [2654929] (in reverse order)
[2025-12-02 14:48:43] 2025-12-02 13:43:08,794 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:48:43] 2025-12-02 13:43:08,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:48:43] 2025-12-02 13:43:08,811 | INFO     | did not find any defunct processes belonging to 2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:08,827 | INFO     | did not find any defunct processes belonging to 2654929
[2025-12-02 14:48:43] 2025-12-02 13:43:08,829 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:48:43] 2025-12-02 13:43:08,829 | INFO     | ready for new job
[2025-12-02 14:48:43] 2025-12-02 13:43:08,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:48:43] 2025-12-02 13:43:08,835 | INFO     | ***************************************
[2025-12-02 14:48:43] 2025-12-02 13:43:08,835 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:48:43] 2025-12-02 13:43:08,835 | INFO     | ***************************************
[2025-12-02 14:48:43] 2025-12-02 13:43:08,836 | INFO     | 
[2025-12-02 14:48:43] 2025-12-02 13:43:08,840 | INFO     | architecture information:
[2025-12-02 14:48:43] 2025-12-02 13:43:08,841 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:48:43] 2025-12-02 13:43:08,856 | INFO     | cat /etc/os-release:
[2025-12-02 14:48:43] NAME="CentOS Linux"
[2025-12-02 14:48:43] VERSION="7 (Core)"
[2025-12-02 14:48:43] ID="centos"
[2025-12-02 14:48:43] ID_LIKE="rhel fedora"
[2025-12-02 14:48:43] VERSION_ID="7"
[2025-12-02 14:48:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:48:43] ANSI_COLOR="0;31"
[2025-12-02 14:48:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:48:43] HOME_URL="https://www.centos.org/"
[2025-12-02 14:48:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:48:43] 
[2025-12-02 14:48:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:48:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:48:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:48:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:48:43] 
[2025-12-02 14:48:43] 2025-12-02 13:43:08,856 | INFO     | ***************************************
[2025-12-02 14:48:43] 2025-12-02 13:43:09,359 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-02 14:48:43] 2025-12-02 13:43:09,378 | INFO     | sufficient remaining disk space (570584727552 B)
[2025-12-02 14:48:43] 2025-12-02 13:43:09,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:48:43] 2025-12-02 13:43:09,379 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:48:43] 2025-12-02 13:43:09,379 | INFO     | update_server=False
[2025-12-02 14:48:43] 2025-12-02 13:43:09,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:48:43] 2025-12-02 13:43:09,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:48:43] 2025-12-02 13:43:09,544 | INFO     | all data control threads have been joined
[2025-12-02 14:48:43] 2025-12-02 13:43:09,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:48:43] 2025-12-02 13:43:09,556 | INFO     | aborting loop
[2025-12-02 14:48:43] 2025-12-02 13:43:09,867 | INFO     | all payload control threads have been joined
[2025-12-02 14:48:43] 2025-12-02 13:43:09,876 | INFO     | all job control threads have been joined
[2025-12-02 14:48:43] 2025-12-02 13:43:10,385 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:48:43] 2025-12-02 13:43:10,440 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,448 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,514 | INFO     | [job] validate thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,549 | INFO     | [data] control thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,559 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,733 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,872 | INFO     | [payload] control thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:10,881 | INFO     | [job] control thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:11,208 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:11,385 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:11,404 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:11,573 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:11,749 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:12,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:48:43] 2025-12-02 13:43:13,217 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:14,410 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:48:43] 2025-12-02 13:43:39,068 | INFO     | PID=2647286 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 14:48:43] 2025-12-02 13:43:39,068 | INFO     | .. there are 4 such processes running
[2025-12-02 14:48:43] 2025-12-02 13:43:39,068 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:48:43] 2025-12-02 13:43:39,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:48:43] 2025-12-02 13:43:39,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:48:43] 2025-12-02 13:43:39,544 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:48:43] 2025-12-02 13:43:40,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23077004969792)>', '<ExcThread(monitor, started 23076766975744)>']
[2025-12-02 14:48:43] 2025-12-02 13:43:41,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:48:43] 2025-12-02 13:43:41,078 | INFO     | [monitor] control thread has ended
[2025-12-02 14:48:43] 2025-12-02 13:43:45,575 | INFO     | all workflow threads have been joined
[2025-12-02 14:48:43] 2025-12-02 13:43:45,577 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:48:43] 2025-12-02 13:43:45,577 | INFO     | traces error code: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:45,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:48:43] 2025-12-02 13:43:45,719 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:48:43] 2025-12-02 13:43:45,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:48:43] 2025-12-02 13:43:45,725 [wrapper] pilotpid: 2647286
[2025-12-02 14:48:43] 2025-12-02 13:43:45,728 [wrapper] Pilot exit status: 0
[2025-12-02 14:48:43] 2025-12-02 13:43:45,740 [wrapper] pandaids: 6898378690
[2025-12-02 14:48:43] 2025-12-02 13:43:45,795 [wrapper] cleanup supervisor_pilot 3636013 2647287
[2025-12-02 14:48:43] 2025-12-02 13:43:45,797 [wrapper] Test setup, not cleaning
[2025-12-02 14:48:43] 2025-12-02 13:43:45,799 [wrapper] apfmon messages muted
[2025-12-02 14:48:43] 2025-12-02 13:43:45,801 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:48:43] 2025-12-02 13:43:45,803 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:48:43]  *** Error codes and diagnostics ***
[2025-12-02 14:48:43]     "exeErrorCode": 0,
[2025-12-02 14:48:43]     "exeErrorDiag": "",
[2025-12-02 14:48:43]     "pilotErrorCode": 0,
[2025-12-02 14:48:43]     "pilotErrorDiag": "",
[2025-12-02 14:48:43]  *** Listing of results directory ***
[2025-12-02 14:48:43] total 1334136
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 14:48:43] -rwx------ 1 boinc boinc     36292 Nov 26 17:38 runpilot2-wrapper.sh
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:41 queuedata.json
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc       100 Dec  1 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:48:43] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 20:59 run_atlas
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc       105 Dec  1 20:59 job.xml
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc 410879522 Dec  1 20:59 EVNT.47483658._002622.pool.root.1
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc      6635 Dec  1 20:59 init_data.xml
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc     15847 Dec  1 20:59 start_atlas.sh
[2025-12-02 14:48:43] drwxrwx--x 2 boinc boinc      4096 Dec  1 20:59 shared
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc    590114 Dec  1 20:59 input.tar.gz
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc         0 Dec  1 20:59 boinc_lockfile
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc      2787 Dec  1 20:59 pandaJob.out
[2025-12-02 14:48:43] -rw------- 1 boinc boinc    992004 Dec  1 20:59 agis_schedconf.cvmfs.json
[2025-12-02 14:48:43] drwx------ 5 boinc boinc      4096 Dec  1 20:59 pilot3
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc       532 Dec  2 14:33 boinc_task_state.xml
[2025-12-02 14:48:43] -rw------- 1 boinc boinc 929954478 Dec  2 14:42 HITS.47556161._006044.pool.root.1
[2025-12-02 14:48:43] -rw------- 1 boinc boinc      1056 Dec  2 14:42 memory_monitor_summary.json
[2025-12-02 14:48:43] -rw------- 1 boinc boinc   1516240 Dec  2 14:42 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:48:43] -rw------- 1 boinc boinc   1771730 Dec  2 14:42 log.47556161._006044.job.log.tgz.1
[2025-12-02 14:48:43] -rw------- 1 boinc boinc        95 Dec  2 14:43 pilot_heartbeat.json
[2025-12-02 14:48:43] -rw------- 1 boinc boinc      8654 Dec  2 14:43 heartbeat.json
[2025-12-02 14:48:43] -rw------- 1 boinc boinc      4833 Dec  2 14:43 pilotlog.txt
[2025-12-02 14:48:43] -rw------- 1 boinc boinc   8925404 Dec  2 14:43 log.47556161._006044.job.log.1
[2025-12-02 14:48:43] -rw------- 1 boinc boinc       353 Dec  2 14:43 output.list
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc       620 Dec  2 14:43 runtime_log
[2025-12-02 14:48:43] -rw------- 1 boinc boinc  10721280 Dec  2 14:43 result.tar.gz
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc      9206 Dec  2 14:43 runtime_log.err
[2025-12-02 14:48:43] -rw------- 1 boinc boinc       674 Dec  2 14:43 UP9MDmliXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKBKKDmUz8e0m.diag
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc        28 Dec  2 14:48 wrapper_checkpoint.txt
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc      8192 Dec  2 14:48 boinc_mmap_file
[2025-12-02 14:48:43] -rw-r--r-- 1 boinc boinc     21146 Dec  2 14:48 stderr.txt
[2025-12-02 14:48:43] HITS file was successfully produced:
[2025-12-02 14:48:43] -rw------- 1 boinc boinc 929954478 Dec  2 14:42 shared/HITS.pool.root.1
[2025-12-02 14:48:43]  *** Contents of shared directory: ***
[2025-12-02 14:48:43] total 1320488
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc 410879522 Dec  1 20:59 ATLAS.root_0
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc     15847 Dec  1 20:59 start_atlas.sh
[2025-12-02 14:48:43] -rw-r--r-- 2 boinc boinc    590114 Dec  1 20:59 input.tar.gz
[2025-12-02 14:48:43] -rw------- 1 boinc boinc 929954478 Dec  2 14:42 HITS.pool.root.1
[2025-12-02 14:48:43] -rw------- 1 boinc boinc  10721280 Dec  2 14:43 result.tar.gz
14:48:45 (2643435): run_atlas exited; CPU time 254932.532579
14:48:45 (2643435): called boinc_finish(0)

</stderr_txt>
]]>

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