Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:59:08 (28677): wrapper (7.7.26015): starting
18:59:08 (28677): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 18:59:08] Arguments: --nthreads 8
[2025-11-29 18:59:08] Threads: 8
[2025-11-29 18:59:08] Checking for CVMFS
[2025-11-29 18:59:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 18:59:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 18:59:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 18:59:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 18:59:11] 2.11.2.0 2048 176826 137404 153451 1 85 22312813 25165824 2504 130560 10 59332803 99.871 33769973 2210 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 18:59:11] CVMFS is ok
[2025-11-29 18:59:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 18:59:11] Checking for apptainer binary...
[2025-11-29 18:59:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 18:59:11] Running /usr/bin/apptainer --version
[2025-11-29 18:59:11] apptainer version 1.3.2-1.el7
[2025-11-29 18:59:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 18:59:35] cg-vwn398.simple-grid.lan
[2025-11-29 18:59:35] apptainer works
[2025-11-29 18:59:35] Set ATHENA_PROC_NUMBER=8
[2025-11-29 18:59:35] Set ATHENA_CORE_NUMBER=8
[2025-11-29 18:59:35] Starting ATLAS job with PandaID=6898378105
[2025-11-29 18:59:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 18:27:44]  *** The last 200 lines of the pilot log: ***
[2025-11-30 18:27:44] 2025-11-30 17:26:38,918 | INFO     | PID=32452 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 18:27:44] 2025-11-30 17:26:38,918 | INFO     | .. there are 9 such processes running
[2025-11-30 18:27:44] 2025-11-30 17:26:39,922 | INFO     | time since job start (84212s) is within the limit (172800.0s)
[2025-11-30 18:27:44] 2025-11-30 17:26:41,296 | INFO     | monitor loop #5664: job 0:6898378105 is in state 'finished'
[2025-11-30 18:27:44] 2025-11-30 17:26:41,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:27:44] 2025-11-30 17:26:41,932 | INFO     | time since job start (84214s) is within the limit (172800.0s)
[2025-11-30 18:27:44] 2025-11-30 17:26:43,802 | INFO     | monitor loop #5665: job 0:6898378105 is in state 'finished'
[2025-11-30 18:27:44] 2025-11-30 17:26:43,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:27:44] 2025-11-30 17:26:43,946 | INFO     | time since job start (84216s) is within the limit (172800.0s)
[2025-11-30 18:27:44] 2025-11-30 17:26:45,954 | INFO     | time since job start (84218s) is within the limit (172800.0s)
[2025-11-30 18:27:44] 2025-11-30 17:26:46,311 | INFO     | monitor loop #5666: job 0:6898378105 is in state 'finished'
[2025-11-30 18:27:44] 2025-11-30 17:26:46,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,694 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 18:27:44] 2025-11-30 17:26:47,702 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 18:27:44] 2025-11-30 17:26:47,705 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6898378105/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,706 | INFO     | extracted standard info from prmon json
[2025-11-30 18:27:44] 2025-11-30 17:26:47,706 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 18:27:44] 2025-11-30 17:26:47,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 18:27:44] 2025-11-30 17:26:47,732 | INFO     | fitting pss+swap vs Time
[2025-11-30 18:27:44] 2025-11-30 17:26:47,734 | INFO     | sum of square deviations: 799080462931.8514
[2025-11-30 18:27:44] 2025-11-30 17:26:47,796 | INFO     | sum of deviations: 2926059946604.14
[2025-11-30 18:27:44] 2025-11-30 17:26:47,797 | INFO     | mean x: 1764481674.07221
[2025-11-30 18:27:44] 2025-11-30 17:26:47,797 | INFO     | mean y: 2823267.473377097
[2025-11-30 18:27:44] 2025-11-30 17:26:47,797 | INFO     | intersect: -6458327258.065166
[2025-11-30 18:27:44] 2025-11-30 17:26:47,799 | INFO     | chi2: 25.531421008225962
[2025-11-30 18:27:44] 2025-11-30 17:26:47,801 | INFO     | sum of square deviations: 790370078183.582
[2025-11-30 18:27:44] 2025-11-30 17:26:47,857 | INFO     | sum of deviations: 3377036237935.528
[2025-11-30 18:27:44] 2025-11-30 17:26:47,858 | INFO     | mean x: 1764481521.5761347
[2025-11-30 18:27:44] 2025-11-30 17:26:47,858 | INFO     | mean y: 2831162.2737920936
[2025-11-30 18:27:44] 2025-11-30 17:26:47,858 | INFO     | intersect: -7536318160.312499
[2025-11-30 18:27:44] 2025-11-30 17:26:47,860 | INFO     | chi2: 22.288221366674293
[2025-11-30 18:27:44] 2025-11-30 17:26:47,860 | INFO     | current chi2=22.288221366674293 (change=12.702777649966071 %)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,860 | INFO     | right removable region: 1365
[2025-11-30 18:27:44] 2025-11-30 17:26:47,862 | INFO     | sum of square deviations: 790369181483.5822
[2025-11-30 18:27:44] 2025-11-30 17:26:47,919 | INFO     | sum of deviations: 2363292601759.193
[2025-11-30 18:27:44] 2025-11-30 17:26:47,919 | INFO     | mean x: 1764481826.5761347
[2025-11-30 18:27:44] 2025-11-30 17:26:47,919 | INFO     | mean y: 2833118.5702781845
[2025-11-30 18:27:44] 2025-11-30 17:26:47,919 | INFO     | intersect: -5273165673.359525
[2025-11-30 18:27:44] 2025-11-30 17:26:47,921 | INFO     | chi2: 20.95912470976254
[2025-11-30 18:27:44] 2025-11-30 17:26:47,921 | INFO     | current chi2=20.95912470976254 (change=17.908506921687884 %)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,921 | INFO     | left removable region: 10
[2025-11-30 18:27:44] 2025-11-30 17:26:47,923 | INFO     | sum of square deviations: 771428757873.2394
[2025-11-30 18:27:44] 2025-11-30 17:26:47,971 | INFO     | time since job start (84220s) is within the limit (172800.0s)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,987 | INFO     | sum of deviations: 2417866455205.925
[2025-11-30 18:27:44] 2025-11-30 17:26:47,993 | INFO     | mean x: 1764481796.0848708
[2025-11-30 18:27:44] 2025-11-30 17:26:47,993 | INFO     | mean y: 2851642.9136531367
[2025-11-30 18:27:44] 2025-11-30 17:26:47,994 | INFO     | intersect: -5527511727.693464
[2025-11-30 18:27:44] 2025-11-30 17:26:47,995 | INFO     | chi2: 13.471405990162484
[2025-11-30 18:27:44] 2025-11-30 17:26:47,995 | INFO     | current memory leak: 3.13 B/s (using 1355 data points, chi2=13.47)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,997 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-30 18:27:44] 2025-11-30 17:26:47,997 | INFO     | ..............................
[2025-11-30 18:27:44] 2025-11-30 17:26:47,997 | INFO     | . Timing measurements:
[2025-11-30 18:27:44] 2025-11-30 17:26:47,997 | INFO     | . get job = 0 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . initial setup = 9 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . payload setup = 148 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . stage-in = 0 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . payload execution = 83783 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . stage-out = 5 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | . log creation = 2 s
[2025-11-30 18:27:44] 2025-11-30 17:26:47,998 | INFO     | ..............................
[2025-11-30 18:27:44] 2025-11-30 17:26:48,114 | INFO     | 
[2025-11-30 18:27:44] 2025-11-30 17:26:48,114 | INFO     | job summary report
[2025-11-30 18:27:44] 2025-11-30 17:26:48,114 | INFO     | --------------------------------------------------
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | PanDA job id: 6898378105
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | task id: 47556161
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | errors: (none)
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | pilot state: finished 
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | transexitcode: 0
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | exeerrorcode: 0
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | exeerrordiag: 
[2025-11-30 18:27:44] 2025-11-30 17:26:48,115 | INFO     | exitcode: 0
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | exitmsg: OK
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | cpuconsumptiontime: 313964 s
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | nevents: 1000
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | neventsw: 0
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | pid: 6683
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | pgrp: 6683
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | corecount: 8
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | event service: False
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | sizes: {0: 2284146, 1: 2284345, 12: 2284345, 23: 2284373, 33: 2284401, 44: 2284457, 55: 2284613, 66: 2284641, 76: 2284669, 87: 2284725, 92: 2285015, 98: 2285323, 8
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | --------------------------------------------------
[2025-11-30 18:27:44] 2025-11-30 17:26:48,116 | INFO     | 
[2025-11-30 18:27:44] 2025-11-30 17:26:48,117 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-30 18:27:44] 2025-11-30 17:26:48,458 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,458 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,458 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,458 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | job 6898378105 has completed (purged errors)
[2025-11-30 18:27:44] 2025-11-30 17:26:48,460 | INFO     | overall cleanup function is called
[2025-11-30 18:27:44] 2025-11-30 17:26:49,477 | INFO     | --- collectZombieJob: --- 10, [6683]
[2025-11-30 18:27:44] 2025-11-30 17:26:49,477 | INFO     | zombie collector waiting for pid 6683
[2025-11-30 18:27:44] 2025-11-30 17:26:49,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 18:27:44] 2025-11-30 17:26:49,478 | INFO     | collected zombie processes
[2025-11-30 18:27:44] 2025-11-30 17:26:49,478 | INFO     | will attempt to kill all subprocesses of pid=6683
[2025-11-30 18:27:44] 2025-11-30 17:26:49,612 | INFO     | process IDs to be killed: [6683] (in reverse order)
[2025-11-30 18:27:44] 2025-11-30 17:26:49,839 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 18:27:44] 2025-11-30 17:26:49,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 18:27:44] 2025-11-30 17:26:49,842 | INFO     | did not find any defunct processes belonging to 6683
[2025-11-30 18:27:44] 2025-11-30 17:26:49,844 | INFO     | did not find any defunct processes belonging to 6683
[2025-11-30 18:27:44] 2025-11-30 17:26:49,877 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 18:27:44] 2025-11-30 17:26:49,877 | INFO     | ready for new job
[2025-11-30 18:27:44] 2025-11-30 17:26:49,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 18:27:44] 2025-11-30 17:26:49,883 | INFO     | ***************************************
[2025-11-30 18:27:44] 2025-11-30 17:26:49,883 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 18:27:44] 2025-11-30 17:26:49,884 | INFO     | ***************************************
[2025-11-30 18:27:44] 2025-11-30 17:26:49,884 | INFO     | 
[2025-11-30 18:27:44] 2025-11-30 17:26:49,884 | INFO     | pilot is running in a VM
[2025-11-30 18:27:44] 2025-11-30 17:26:49,884 | INFO     | architecture information:
[2025-11-30 18:27:44] 2025-11-30 17:26:49,888 | INFO     | executing command: cat /etc/os-release
[2025-11-30 18:27:44] 2025-11-30 17:26:50,126 | INFO     | cat /etc/os-release:
[2025-11-30 18:27:44] NAME="CentOS Linux"
[2025-11-30 18:27:44] VERSION="7 (Core)"
[2025-11-30 18:27:44] ID="centos"
[2025-11-30 18:27:44] ID_LIKE="rhel fedora"
[2025-11-30 18:27:44] VERSION_ID="7"
[2025-11-30 18:27:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 18:27:44] ANSI_COLOR="0;31"
[2025-11-30 18:27:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 18:27:44] HOME_URL="https://www.centos.org/"
[2025-11-30 18:27:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 18:27:44] 
[2025-11-30 18:27:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 18:27:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 18:27:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 18:27:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 18:27:44] 
[2025-11-30 18:27:44] 2025-11-30 17:26:50,127 | INFO     | ***************************************
[2025-11-30 18:27:44] 2025-11-30 17:26:50,630 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-30 18:27:44] 2025-11-30 17:26:50,952 | INFO     | sufficient remaining disk space (487698989056 B)
[2025-11-30 18:27:44] 2025-11-30 17:26:50,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 18:27:44] 2025-11-30 17:26:50,952 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 18:27:44] 2025-11-30 17:26:50,953 | INFO     | update_server=False
[2025-11-30 18:27:44] 2025-11-30 17:26:50,953 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 18:27:44] 2025-11-30 17:26:50,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 18:27:44] 2025-11-30 17:26:50,978 | INFO     | all payload control threads have been joined
[2025-11-30 18:27:44] 2025-11-30 17:26:51,328 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 18:27:44] 2025-11-30 17:26:51,328 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 18:27:44] 2025-11-30 17:26:51,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:27:44] 2025-11-30 17:26:51,328 | INFO     | will abort loop
[2025-11-30 18:27:44] 2025-11-30 17:26:51,526 | INFO     | all data control threads have been joined
[2025-11-30 18:27:44] 2025-11-30 17:26:51,765 | INFO     | all job control threads have been joined
[2025-11-30 18:27:44] 2025-11-30 17:26:51,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 18:27:44] 2025-11-30 17:26:51,958 | INFO     | [job] retrieve thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:51,984 | INFO     | [payload] control thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,012 | INFO     | [data] copytool_in thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,118 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,334 | INFO     | [job] job monitor thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,532 | INFO     | [data] control thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,564 | INFO     | [payload] validate_post thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,771 | INFO     | [job] control thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:52,969 | INFO     | [payload] failed_post thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:53,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:27:44] 2025-11-30 17:26:53,132 | INFO     | [job] validate thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:53,936 | INFO     | [data] copytool_out thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:54,135 | INFO     | [job] queue monitor thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:26:54,962 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 18:27:44] 2025-11-30 17:27:20,012 | INFO     | 84232s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-30 18:27:44] 2025-11-30 17:27:21,166 | INFO     | PID=32452 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 18:27:44] 2025-11-30 17:27:21,167 | INFO     | .. there are 9 such processes running
[2025-11-30 18:27:44] 2025-11-30 17:27:21,167 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 18:27:44] 2025-11-30 17:27:21,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 18:27:44] 2025-11-30 17:27:21,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 18:27:44] 2025-11-30 17:27:33,732 | INFO     | [monitor] cgroup control has ended
[2025-11-30 18:27:44] 2025-11-30 17:27:35,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689816860480)>', '<ExcThread(monitor, started 139689239504640)>']
[2025-11-30 18:27:44] 2025-11-30 17:27:36,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 18:27:44] 2025-11-30 17:27:36,257 | INFO     | [monitor] control thread has ended
[2025-11-30 18:27:44] 2025-11-30 17:27:40,690 | INFO     | all workflow threads have been joined
[2025-11-30 18:27:44] 2025-11-30 17:27:40,690 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 18:27:44] 2025-11-30 17:27:40,691 | INFO     | traces error code: 0
[2025-11-30 18:27:44] 2025-11-30 17:27:40,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 18:27:44] 2025-11-30 17:27:41,034 [wrapper] ==== pilot stdout END ====
[2025-11-30 18:27:44] 2025-11-30 17:27:41,131 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 18:27:44] 2025-11-30 17:27:41,213 [wrapper] pilotpid: 32452
[2025-11-30 18:27:44] 2025-11-30 17:27:41,296 [wrapper] Pilot exit status: 0
[2025-11-30 18:27:44] 2025-11-30 17:27:41,495 [wrapper] pandaids: 6898378105
[2025-11-30 18:27:44] 2025-11-30 17:27:42,187 [wrapper] cleanup supervisor_pilot 32435 32453
[2025-11-30 18:27:44] 2025-11-30 17:27:42,230 [wrapper] Test setup, not cleaning
[2025-11-30 18:27:44] 2025-11-30 17:27:42,298 [wrapper] apfmon messages muted
[2025-11-30 18:27:44] 2025-11-30 17:27:42,378 [wrapper] ==== wrapper stdout END ====
[2025-11-30 18:27:44] 2025-11-30 17:27:42,435 [wrapper] ==== wrapper stderr END ====
[2025-11-30 18:27:44]  *** Error codes and diagnostics ***
[2025-11-30 18:27:44]     "exeErrorCode": 0,
[2025-11-30 18:27:44]     "exeErrorDiag": "",
[2025-11-30 18:27:44]     "pilotErrorCode": 0,
[2025-11-30 18:27:44]     "pilotErrorDiag": "",
[2025-11-30 18:27:44]  *** Listing of results directory ***
[2025-11-30 18:27:44] total 1313668
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-30 18:27:44] -rwx------. 1 boinc boinc     36292 Nov 26 17:38 runpilot2-wrapper.sh
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:41 queuedata.json
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc       100 Nov 29 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 18:27:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 18:59 run_atlas
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc       105 Nov 29 18:59 job.xml
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc      6392 Nov 29 18:59 init_data.xml
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc 407778890 Nov 29 18:59 EVNT.47483658._002587.pool.root.1
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc     15847 Nov 29 18:59 start_atlas.sh
[2025-11-30 18:27:44] drwxrwx--x. 2 boinc boinc        68 Nov 29 18:59 shared
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc    590106 Nov 29 18:59 input.tar.gz
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc         0 Nov 29 18:59 boinc_lockfile
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc      2787 Nov 29 18:59 pandaJob.out
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc    991834 Nov 29 19:03 agis_schedconf.cvmfs.json
[2025-11-30 18:27:44] drwx------. 5 boinc boinc      4096 Nov 29 19:03 pilot3
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc       533 Nov 30 17:58 boinc_task_state.xml
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc 906138229 Nov 30 18:23 HITS.47556161._005699.pool.root.1
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc      1029 Nov 30 18:25 memory_monitor_summary.json
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc   1516240 Nov 30 18:25 agis_ddmendpoints.agis.ALL.json
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc   2458584 Nov 30 18:25 log.47556161._005699.job.log.tgz.1
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc        95 Nov 30 18:26 pilot_heartbeat.json
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc      8626 Nov 30 18:26 heartbeat.json
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc      8192 Nov 30 18:27 boinc_mmap_file
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc        29 Nov 30 18:27 wrapper_checkpoint.txt
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc      5187 Nov 30 18:27 pilotlog.txt
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc  11227662 Nov 30 18:27 log.47556161._005699.job.log.1
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc       353 Nov 30 18:27 output.list
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc       620 Nov 30 18:27 runtime_log
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc  13701120 Nov 30 18:27 result.tar.gz
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc      8833 Nov 30 18:27 runtime_log.err
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc       662 Nov 30 18:27 7K8KDmliXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqHNKDm42qsnn.diag
[2025-11-30 18:27:44] -rw-r--r--. 1 boinc boinc     21484 Nov 30 18:27 stderr.txt
[2025-11-30 18:27:44] HITS file was successfully produced:
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc 906138229 Nov 30 18:23 shared/HITS.pool.root.1
[2025-11-30 18:27:44]  *** Contents of shared directory: ***
[2025-11-30 18:27:44] total 1297104
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc 407778890 Nov 29 18:59 ATLAS.root_0
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc     15847 Nov 29 18:59 start_atlas.sh
[2025-11-30 18:27:44] -rw-r--r--. 2 boinc boinc    590106 Nov 29 18:59 input.tar.gz
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc 906138229 Nov 30 18:23 HITS.pool.root.1
[2025-11-30 18:27:44] -rw-------. 1 boinc boinc  13701120 Nov 30 18:27 result.tar.gz
18:27:46 (28677): run_atlas exited; CPU time 314583.322786
18:27:46 (28677): called boinc_finish(0)

</stderr_txt>
]]>

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