Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:41:14 (2655175): wrapper (7.7.26015): starting
14:41:14 (2655175): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:41:14] Arguments: --nthreads 8
[2025-11-27 14:41:14] Threads: 8
[2025-11-27 14:41:14] Checking for CVMFS
[2025-11-27 14:41:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:41:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:41:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:41:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:41:15] 2.13.3.0 10223 31901 240440 153383 3 381 28289767 40960000 46455 16776704 0 415086876 99.760 264166837 50985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 14:41:15] CVMFS is ok
[2025-11-27 14:41:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:41:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:41:15] Further information can be found at the LHC@home message board.
[2025-11-27 14:41:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:41:15] Checking for apptainer binary...
[2025-11-27 14:41:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:41:15] Running /usr/bin/apptainer --version
[2025-11-27 14:41:15] apptainer version 1.4.4-1.el9
[2025-11-27 14:41:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:41:16] c8-7-6.aglt2.org
[2025-11-27 14:41:16] apptainer works
[2025-11-27 14:41:16] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:41:16] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:41:16] Starting ATLAS job with PandaID=6898377790
[2025-11-27 14:41:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:33:22]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:33:22] 2025-11-28 04:32:31,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:33:22] 2025-11-28 04:32:32,364 | INFO     | time since job start (31832s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:34,373 | INFO     | time since job start (31834s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:34,417 | INFO     | monitor loop #1848: job 0:6898377790 is in state 'finished'
[2025-11-27 23:33:22] 2025-11-28 04:32:34,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:33:22] 2025-11-28 04:32:36,380 | INFO     | time since job start (31836s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:36,932 | INFO     | monitor loop #1849: job 0:6898377790 is in state 'finished'
[2025-11-27 23:33:22] 2025-11-28 04:32:36,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:33:22] 2025-11-28 04:32:38,387 | INFO     | time since job start (31838s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:39,447 | INFO     | monitor loop #1850: job 0:6898377790 is in state 'finished'
[2025-11-27 23:33:22] 2025-11-28 04:32:39,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:33:22] 2025-11-28 04:32:40,410 | INFO     | time since job start (31840s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:41,999 | INFO     | monitor loop #1851: job 0:6898377790 is in state 'finished'
[2025-11-27 23:33:22] 2025-11-28 04:32:42,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:33:22] 2025-11-28 04:32:43,117 | INFO     | PID=2662920 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:33:22] 2025-11-28 04:32:43,117 | INFO     | .. there are 65 such processes running
[2025-11-27 23:33:22] 2025-11-28 04:32:44,108 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:33:22] 2025-11-28 04:32:44,118 | INFO     | time since job start (31844s) is within the limit (172800.0s)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,131 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.9418203125
[2025-11-27 23:33:22] 2025-11-28 04:32:44,190 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898377790/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,190 | INFO     | extracted standard info from prmon json
[2025-11-27 23:33:22] 2025-11-28 04:32:44,190 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:33:22] 2025-11-28 04:32:44,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:33:22] 2025-11-28 04:32:44,199 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:33:22] 2025-11-28 04:32:44,199 | INFO     | sum of square deviations: 43598624654.99799
[2025-11-27 23:33:22] 2025-11-28 04:32:44,207 | INFO     | sum of deviations: 40698965287.58817
[2025-11-27 23:33:22] 2025-11-28 04:32:44,207 | INFO     | mean x: 1764288455.5980768
[2025-11-27 23:33:22] 2025-11-28 04:32:44,207 | INFO     | mean y: 2803606.9884615387
[2025-11-27 23:33:22] 2025-11-28 04:32:44,207 | INFO     | intersect: -1644145469.4991436
[2025-11-27 23:33:22] 2025-11-28 04:32:44,208 | INFO     | chi2: 15.70670288862562
[2025-11-27 23:33:22] 2025-11-28 04:32:44,212 | INFO     | sum of square deviations: 42353156843.91131
[2025-11-27 23:33:22] 2025-11-28 04:32:44,215 | INFO     | sum of deviations: 208503640454.55545
[2025-11-27 23:33:22] 2025-11-28 04:32:44,216 | INFO     | mean x: 1764288303.108738
[2025-11-27 23:33:22] 2025-11-28 04:32:44,216 | INFO     | mean y: 2824143.454368932
[2025-11-27 23:33:22] 2025-11-28 04:32:44,216 | INFO     | intersect: -8682727570.324099
[2025-11-27 23:33:22] 2025-11-28 04:32:44,220 | INFO     | chi2: 12.293315254227814
[2025-11-27 23:33:22] 2025-11-28 04:32:44,220 | INFO     | current chi2=12.293315254227814 (change=21.732044329110543 %)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,220 | INFO     | right removable region: 514
[2025-11-27 23:33:22] 2025-11-28 04:32:44,220 | INFO     | sum of square deviations: 42352808533.91131
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | sum of deviations: -138880363153.61014
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | mean x: 1764288608.108738
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | mean y: 2825574.046601942
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | intersect: 5788157198.647855
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | chi2: 12.538620373377942
[2025-11-27 23:33:22] 2025-11-28 04:32:44,228 | INFO     | current chi2=12.538620373377942 (change=20.17025812299486 %)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,229 | INFO     | left removable region: 10
[2025-11-27 23:33:22] 2025-11-28 04:32:44,229 | INFO     | sum of square deviations: 39696607502.61699
[2025-11-27 23:33:22] 2025-11-28 04:32:44,236 | INFO     | sum of deviations: 28803291640.9067
[2025-11-27 23:33:22] 2025-11-28 04:32:44,236 | INFO     | mean x: 1764288577.6210318
[2025-11-27 23:33:22] 2025-11-28 04:32:44,236 | INFO     | mean y: 2854992.140873016
[2025-11-27 23:33:22] 2025-11-28 04:32:44,236 | INFO     | intersect: -1277287610.387288
[2025-11-27 23:33:22] 2025-11-28 04:32:44,237 | INFO     | chi2: 8.34785099757633
[2025-11-27 23:33:22] 2025-11-28 04:32:44,237 | INFO     | current memory leak: 0.73 B/s (using 504 data points, chi2=8.35)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,237 | INFO     | could have reported an average CPU frequency of 3773 MHz (21 samples)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | ..............................
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . Timing measurements:
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . get job = 0 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . initial setup = 3 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . payload setup = 25 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . stage-in = 0 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . payload execution = 31711 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . stage-out = 11 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | . log creation = 2 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,238 | INFO     | ..............................
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | 
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | job summary report
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | --------------------------------------------------
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | PanDA job id: 6898377790
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | task id: 47556161
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | errors: (none)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | pilot state: finished 
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | transexitcode: 0
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | exeerrorcode: 0
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | exeerrordiag: 
[2025-11-27 23:33:22] 2025-11-28 04:32:44,338 | INFO     | exitcode: 0
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | exitmsg: OK
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | cpuconsumptiontime: 135220 s
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | nevents: 1000
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | neventsw: 0
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | pid: 2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | pgrp: 2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | corecount: 8
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | event service: False
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | sizes: {0: 2283488, 1: 2284344, 12: 2284344, 22: 2284372, 25: 2284662, 33: 2284690, 31738: 2324051, 31750: 2333045, 31753: 2333101, 31789: 2333347}
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | --------------------------------------------------
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | 
[2025-11-27 23:33:22] 2025-11-28 04:32:44,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,430 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | job 6898377790 has completed (purged errors)
[2025-11-27 23:33:22] 2025-11-28 04:32:44,433 | INFO     | overall cleanup function is called
[2025-11-27 23:33:22] 2025-11-28 04:32:45,459 | INFO     | --- collectZombieJob: --- 10, [2683461]
[2025-11-27 23:33:22] 2025-11-28 04:32:45,459 | INFO     | zombie collector waiting for pid 2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:45,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:33:22] 2025-11-28 04:32:45,459 | INFO     | collected zombie processes
[2025-11-27 23:33:22] 2025-11-28 04:32:45,459 | INFO     | will attempt to kill all subprocesses of pid=2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:48,756 | INFO     | process IDs to be killed: [2683461] (in reverse order)
[2025-11-27 23:33:22] 2025-11-28 04:32:49,557 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:33:22] 2025-11-28 04:32:49,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:33:22] 2025-11-28 04:32:49,831 | INFO     | did not find any defunct processes belonging to 2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:50,057 | INFO     | did not find any defunct processes belonging to 2683461
[2025-11-27 23:33:22] 2025-11-28 04:32:50,073 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:33:22] 2025-11-28 04:32:50,074 | INFO     | ready for new job
[2025-11-27 23:33:22] 2025-11-28 04:32:50,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:33:22] 2025-11-28 04:32:50,076 | INFO     | ***************************************
[2025-11-27 23:33:22] 2025-11-28 04:32:50,076 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:33:22] 2025-11-28 04:32:50,076 | INFO     | ***************************************
[2025-11-27 23:33:22] 2025-11-28 04:32:50,076 | INFO     | 
[2025-11-27 23:33:22] 2025-11-28 04:32:50,102 | INFO     | architecture information:
[2025-11-27 23:33:22] 2025-11-28 04:32:50,110 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:33:22] 2025-11-28 04:32:50,253 | INFO     | cat /etc/os-release:
[2025-11-27 23:33:22] NAME="CentOS Linux"
[2025-11-27 23:33:22] VERSION="7 (Core)"
[2025-11-27 23:33:22] ID="centos"
[2025-11-27 23:33:22] ID_LIKE="rhel fedora"
[2025-11-27 23:33:22] VERSION_ID="7"
[2025-11-27 23:33:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:33:22] ANSI_COLOR="0;31"
[2025-11-27 23:33:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:33:22] HOME_URL="https://www.centos.org/"
[2025-11-27 23:33:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:33:22] 
[2025-11-27 23:33:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:33:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:33:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:33:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:33:22] 
[2025-11-27 23:33:22] 2025-11-28 04:32:50,253 | INFO     | ***************************************
[2025-11-27 23:33:22] 2025-11-28 04:32:50,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 23:33:22] 2025-11-28 04:32:50,882 | INFO     | sufficient remaining disk space (159532449792 B)
[2025-11-27 23:33:22] 2025-11-28 04:32:50,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:33:22] 2025-11-28 04:32:50,882 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | INFO     | update_server=False
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | INFO     | aborting loop
[2025-11-27 23:33:22] 2025-11-28 04:32:50,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:33:22] 2025-11-28 04:32:51,011 | INFO     | all data control threads have been joined
[2025-11-27 23:33:22] 2025-11-28 04:32:51,288 | INFO     | all payload control threads have been joined
[2025-11-27 23:33:22] 2025-11-28 04:32:51,888 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:51,896 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:51,954 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,008 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,018 | INFO     | [data] control thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,058 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,058 | INFO     | [job] validate thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,294 | INFO     | [payload] control thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,307 | INFO     | all job control threads have been joined
[2025-11-27 23:33:22] 2025-11-28 04:32:52,749 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,840 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:52,890 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:53,029 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:53,315 | INFO     | [job] control thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:53,378 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:53,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:33:22] 2025-11-28 04:32:54,440 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:54,703 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:33:22] 2025-11-28 04:32:54,904 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:33:22] 2025-11-28 04:32:56,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492920092480)>', '<ExcThread(monitor, started 140492163491584)>']
[2025-11-27 23:33:22] 2025-11-28 04:33:01,375 | INFO     | all workflow threads have been joined
[2025-11-27 23:33:22] 2025-11-28 04:33:01,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:33:22] 2025-11-28 04:33:01,375 | INFO     | traces error code: 0
[2025-11-27 23:33:22] 2025-11-28 04:33:01,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:33:22] 2025-11-28 04:33:18,990 | INFO     | PID=2662920 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:33:22] 2025-11-28 04:33:18,990 | INFO     | .. there are 65 such processes running
[2025-11-27 23:33:22] 2025-11-28 04:33:18,992 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:33:22] 2025-11-28 04:33:18,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:33:22] 2025-11-28 04:33:18,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:33:22] 2025-11-28 04:33:18,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:33:22] 2025-11-28 04:33:18,992 | INFO     | [monitor] control thread has ended
[2025-11-27 23:33:22] 2025-11-28 04:33:20,555 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:33:22] 2025-11-28 04:33:20,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:33:22] 2025-11-28 04:33:20,597 [wrapper] pilotpid: 2662920
[2025-11-27 23:33:22] 2025-11-28 04:33:20,630 [wrapper] Pilot exit status: 0
[2025-11-27 23:33:22] 2025-11-28 04:33:20,795 [wrapper] pandaids: 6898377790
[2025-11-27 23:33:22] 2025-11-28 04:33:21,530 [wrapper] cleanup supervisor_pilot 1812852 2662921
[2025-11-27 23:33:22] 2025-11-28 04:33:21,558 [wrapper] Test setup, not cleaning
[2025-11-27 23:33:22] 2025-11-28 04:33:21,571 [wrapper] apfmon messages muted
[2025-11-27 23:33:22] 2025-11-28 04:33:21,602 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:33:22] 2025-11-28 04:33:21,618 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:33:22]  *** Error codes and diagnostics ***
[2025-11-27 23:33:22]     "exeErrorCode": 0,
[2025-11-27 23:33:22]     "exeErrorDiag": "",
[2025-11-27 23:33:22]     "pilotErrorCode": 0,
[2025-11-27 23:33:22]     "pilotErrorDiag": "",
[2025-11-27 23:33:22]  *** Listing of results directory ***
[2025-11-27 23:33:22] total 1309468
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 23:33:22] -rwx------. 1 boincer umatlas     36292 Nov 26 11:38 runpilot2-wrapper.sh
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:41 queuedata.json
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas       100 Nov 27 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:33:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 14:41 run_atlas
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas       105 Nov 27 14:41 job.xml
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas 409684944 Nov 27 14:41 EVNT.47483658._002582.pool.root.1
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:41 start_atlas.sh
[2025-11-27 23:33:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 14:41 shared
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 14:41 input.tar.gz
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas         0 Nov 27 14:41 boinc_lockfile
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas      2787 Nov 27 14:41 pandaJob.out
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas        57 Nov 27 14:41 setup.sh.local
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas    991191 Nov 27 14:41 agis_schedconf.cvmfs.json
[2025-11-27 23:33:22] drwx------. 5 boincer umatlas      4096 Nov 27 14:42 pilot3
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:10 boinc_task_state.xml
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 23:28 init_data.xml
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas 915900129 Nov 27 23:30 HITS.47556161._005648.pool.root.1
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas      1052 Nov 27 23:31 memory_monitor_summary.json
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas   1764844 Nov 27 23:32 log.47556161._005648.job.log.tgz.1
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas      8590 Nov 27 23:32 heartbeat.json
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:33 wrapper_checkpoint.txt
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:33 boinc_mmap_file
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas        95 Nov 27 23:33 pilot_heartbeat.json
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas       823 Nov 27 23:33 pilotlog.txt
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas   3939748 Nov 27 23:33 log.47556161._005648.job.log.1
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas       353 Nov 27 23:33 output.list
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:33 runtime_log
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas   5724160 Nov 27 23:33 result.tar.gz
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas       658 Nov 27 23:33 xgNODmkiXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6GNKDm5W63Tm.diag
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 23:33 runtime_log.err
[2025-11-27 23:33:22] -rw-r--r--. 1 boincer umatlas     12351 Nov 27 23:33 stderr.txt
[2025-11-27 23:33:22] HITS file was successfully produced:
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas 915900129 Nov 27 23:30 shared/HITS.pool.root.1
[2025-11-27 23:33:22]  *** Contents of shared directory: ***
[2025-11-27 23:33:22] total 1300712
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas 409684944 Nov 27 14:41 ATLAS.root_0
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:41 start_atlas.sh
[2025-11-27 23:33:22] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 14:41 input.tar.gz
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas 915900129 Nov 27 23:30 HITS.pool.root.1
[2025-11-27 23:33:22] -rw-------. 1 boincer umatlas   5724160 Nov 27 23:33 result.tar.gz
23:33:24 (2655175): run_atlas exited; CPU time 135778.396156
23:33:24 (2655175): called boinc_finish(0)

</stderr_txt>
]]>

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