Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:48:42 (2468066): wrapper (7.7.26015): starting
14:48:42 (2468066): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 14:48:42] Arguments: --nthreads 9
[2025-11-27 14:48:42] Threads: 9
[2025-11-27 14:48:42] Checking for CVMFS
[2025-11-27 14:48:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:48:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:48:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:48:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:48:44] 2.13.3.0 22787 31880 243636 153383 0 474 35962411 40960001 58294 16776704 0 464891791 99.751 281323628 47575 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 14:48:44] CVMFS is ok
[2025-11-27 14:48:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:48:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:48:44] Further information can be found at the LHC@home message board.
[2025-11-27 14:48:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:48:44] Checking for apptainer binary...
[2025-11-27 14:48:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:48:44] Running /usr/bin/apptainer --version
[2025-11-27 14:48:44] apptainer version 1.4.4-1.el9
[2025-11-27 14:48:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:48:44] c8-6-11.aglt2.org
[2025-11-27 14:48:44] apptainer works
[2025-11-27 14:48:44] Set ATHENA_PROC_NUMBER=9
[2025-11-27 14:48:44] Set ATHENA_CORE_NUMBER=9
[2025-11-27 14:48:44] Starting ATLAS job with PandaID=6898686344
[2025-11-27 14:48:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:19:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:19:29] 2025-11-28 03:17:38,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:29] 2025-11-28 03:17:39,322 | INFO     | time since job start (26906s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:41,230 | INFO     | monitor loop #1526: job 0:6898686344 is in state 'finished'
[2025-11-27 22:19:29] 2025-11-28 03:17:41,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:29] 2025-11-28 03:17:42,782 | INFO     | PID=2480189 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:19:29] 2025-11-28 03:17:42,782 | INFO     | .. there are 89 such processes running
[2025-11-27 22:19:29] 2025-11-28 03:17:43,752 | INFO     | monitor loop #1527: job 0:6898686344 is in state 'finished'
[2025-11-27 22:19:29] 2025-11-28 03:17:43,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:29] 2025-11-28 03:17:43,800 | INFO     | time since job start (26910s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:45,809 | INFO     | time since job start (26912s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:46,272 | INFO     | monitor loop #1528: job 0:6898686344 is in state 'finished'
[2025-11-27 22:19:29] 2025-11-28 03:17:46,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:29] 2025-11-28 03:17:47,827 | INFO     | time since job start (26914s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:48,781 | INFO     | monitor loop #1529: job 0:6898686344 is in state 'finished'
[2025-11-27 22:19:29] 2025-11-28 03:17:48,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:29] 2025-11-28 03:17:49,834 | INFO     | time since job start (26916s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,624 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:19:29] 2025-11-28 03:17:50,672 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.402484375
[2025-11-27 22:19:29] 2025-11-28 03:17:50,804 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898686344/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,805 | INFO     | extracted standard info from prmon json
[2025-11-27 22:19:29] 2025-11-28 03:17:50,805 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:19:29] 2025-11-28 03:17:50,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:19:29] 2025-11-28 03:17:50,826 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:19:29] 2025-11-28 03:17:50,827 | INFO     | sum of square deviations: 26413976119.963547
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | sum of deviations: -49238589175.70946
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | mean x: 1764286404.3090909
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | mean y: 2908750.6522727273
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | intersect: 3291734827.253755
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | chi2: 20.186480198839938
[2025-11-27 22:19:29] 2025-11-28 03:17:50,830 | INFO     | sum of square deviations: 25523932423.411396
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | sum of deviations: 101289749345.86865
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | mean x: 1764286251.829885
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | mean y: 2934528.579310345
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | intersect: -6998498842.177377
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | chi2: 16.51469868824259
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | current chi2=16.51469868824259 (change=18.189310243438854 %)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,833 | INFO     | right removable region: 434
[2025-11-27 22:19:29] 2025-11-28 03:17:50,834 | INFO     | sum of square deviations: 25523446863.41137
[2025-11-27 22:19:29] 2025-11-28 03:17:50,836 | INFO     | sum of deviations: -224545574837.41846
[2025-11-27 22:19:29] 2025-11-28 03:17:50,836 | INFO     | mean x: 1764286556.829885
[2025-11-27 22:19:29] 2025-11-28 03:17:50,836 | INFO     | mean y: 2938762.832183908
[2025-11-27 22:19:29] 2025-11-28 03:17:50,836 | INFO     | intersect: 15524460648.232683
[2025-11-27 22:19:29] 2025-11-28 03:17:50,837 | INFO     | chi2: 16.303280430453214
[2025-11-27 22:19:29] 2025-11-28 03:17:50,837 | INFO     | current chi2=16.303280430453214 (change=19.23663625424843 %)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,837 | INFO     | left removable region: 10
[2025-11-27 22:19:29] 2025-11-28 03:17:50,837 | INFO     | sum of square deviations: 23635809639.1229
[2025-11-27 22:19:29] 2025-11-28 03:17:50,839 | INFO     | sum of deviations: -130700962430.07535
[2025-11-27 22:19:29] 2025-11-28 03:17:50,840 | INFO     | mean x: 1764286526.3726416
[2025-11-27 22:19:29] 2025-11-28 03:17:50,840 | INFO     | mean y: 2987182.4245283017
[2025-11-27 22:19:29] 2025-11-28 03:17:50,840 | INFO     | intersect: 9759113607.543083
[2025-11-27 22:19:29] 2025-11-28 03:17:50,840 | INFO     | chi2: 10.324422892017349
[2025-11-27 22:19:29] 2025-11-28 03:17:50,840 | INFO     | current memory leak: -5.53 B/s (using 424 data points, chi2=10.32)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | could have reported an average CPU frequency of 3793 MHz (18 samples)
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | ..............................
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . Timing measurements:
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . get job = 0 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . initial setup = 2 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . payload setup = 16 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . stage-in = 0 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . payload execution = 26814 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . stage-out = 7 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | . log creation = 2 s
[2025-11-27 22:19:29] 2025-11-28 03:17:50,841 | INFO     | ..............................
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | 
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | job summary report
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | --------------------------------------------------
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | PanDA job id: 6898686344
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | task id: 47556185
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | errors: (none)
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | pilot state: finished 
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | transexitcode: 0
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | exeerrorcode: 0
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | exeerrordiag: 
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | exitcode: 0
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | exitmsg: OK
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | cpuconsumptiontime: 132003 s
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | nevents: 1000
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | neventsw: 0
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | pid: 2487726
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | pgrp: 2487726
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | corecount: 9
[2025-11-27 22:19:29] 2025-11-28 03:17:51,465 | INFO     | event service: False
[2025-11-27 22:19:29] 2025-11-28 03:17:51,466 | INFO     | sizes: {0: 2284314, 11: 2284314, 15: 2284604, 22: 2284632, 26834: 2320386, 26835: 2320385, 26843: 2329563, 26847: 2329619, 26885: 2329865}
[2025-11-27 22:19:29] 2025-11-28 03:17:51,466 | INFO     | --------------------------------------------------
[2025-11-27 22:19:29] 2025-11-28 03:17:51,466 | INFO     | 
[2025-11-27 22:19:29] 2025-11-28 03:17:51,466 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 22:19:29] 2025-11-28 03:17:51,852 | INFO     | time since job start (26918s) is within the limit (172800.0s)
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | job 6898686344 has completed (purged errors)
[2025-11-27 22:19:29] 2025-11-28 03:17:51,960 | INFO     | overall cleanup function is called
[2025-11-27 22:19:29] 2025-11-28 03:17:52,994 | INFO     | --- collectZombieJob: --- 10, [2487726]
[2025-11-27 22:19:29] 2025-11-28 03:17:52,994 | INFO     | zombie collector waiting for pid 2487726
[2025-11-27 22:19:29] 2025-11-28 03:17:52,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:19:29] 2025-11-28 03:17:52,994 | INFO     | collected zombie processes
[2025-11-27 22:19:29] 2025-11-28 03:17:52,994 | INFO     | will attempt to kill all subprocesses of pid=2487726
[2025-11-27 22:19:29] 2025-11-28 03:17:59,160 | INFO     | process IDs to be killed: [2487726] (in reverse order)
[2025-11-27 22:19:29] 2025-11-28 03:18:00,088 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:19:29] 2025-11-28 03:18:00,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:19:29] 2025-11-28 03:18:01,142 | INFO     | did not find any defunct processes belonging to 2487726
[2025-11-27 22:19:29] 2025-11-28 03:18:01,387 | INFO     | did not find any defunct processes belonging to 2487726
[2025-11-27 22:19:29] 2025-11-28 03:18:01,402 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:19:29] 2025-11-28 03:18:01,402 | INFO     | ready for new job
[2025-11-27 22:19:29] 2025-11-28 03:18:01,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:19:29] 2025-11-28 03:18:01,405 | INFO     | ***************************************
[2025-11-27 22:19:29] 2025-11-28 03:18:01,405 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:19:29] 2025-11-28 03:18:01,405 | INFO     | ***************************************
[2025-11-27 22:19:29] 2025-11-28 03:18:01,405 | INFO     | 
[2025-11-27 22:19:29] 2025-11-28 03:18:01,435 | INFO     | architecture information:
[2025-11-27 22:19:29] 2025-11-28 03:18:01,437 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:19:29] 2025-11-28 03:18:01,646 | INFO     | cat /etc/os-release:
[2025-11-27 22:19:29] NAME="CentOS Linux"
[2025-11-27 22:19:29] VERSION="7 (Core)"
[2025-11-27 22:19:29] ID="centos"
[2025-11-27 22:19:29] ID_LIKE="rhel fedora"
[2025-11-27 22:19:29] VERSION_ID="7"
[2025-11-27 22:19:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:19:29] ANSI_COLOR="0;31"
[2025-11-27 22:19:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:19:29] HOME_URL="https://www.centos.org/"
[2025-11-27 22:19:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:19:29] 
[2025-11-27 22:19:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:19:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:19:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:19:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:19:29] 
[2025-11-27 22:19:29] 2025-11-28 03:18:01,646 | INFO     | ***************************************
[2025-11-27 22:19:29] 2025-11-28 03:18:02,150 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 22:19:29] 2025-11-28 03:18:02,277 | INFO     | sufficient remaining disk space (161864482816 B)
[2025-11-27 22:19:29] 2025-11-28 03:18:02,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:19:29] 2025-11-28 03:18:02,277 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:19:29] 2025-11-28 03:18:02,277 | INFO     | update_server=False
[2025-11-27 22:19:29] 2025-11-28 03:18:02,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:19:29] 2025-11-28 03:18:02,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:19:29] 2025-11-28 03:18:02,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:19:29] 2025-11-28 03:18:02,661 | INFO     | aborting loop
[2025-11-27 22:19:29] 2025-11-28 03:18:02,941 | INFO     | all data control threads have been joined
[2025-11-27 22:19:29] 2025-11-28 03:18:03,089 | INFO     | all job control threads have been joined
[2025-11-27 22:19:29] 2025-11-28 03:18:03,283 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,551 | INFO     | all payload control threads have been joined
[2025-11-27 22:19:29] 2025-11-28 03:18:03,611 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,611 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,613 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,630 | INFO     | [job] validate thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,667 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,836 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,947 | INFO     | [data] control thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:03,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:19:29] 2025-11-28 03:18:03,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:04,098 | INFO     | [job] control thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:04,256 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:04,267 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:04,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:19:29] 2025-11-28 03:18:04,557 | INFO     | [payload] control thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:04,631 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:05,369 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:07,990 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:19:29] 2025-11-28 03:18:27,408 | INFO     | PID=2480189 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:19:29] 2025-11-28 03:18:27,411 | INFO     | .. there are 89 such processes running
[2025-11-27 22:19:29] 2025-11-28 03:18:27,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:19:29] 2025-11-28 03:18:27,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:19:29] 2025-11-28 03:18:27,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:19:29] 2025-11-28 03:19:00,472 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:19:29] 2025-11-28 03:19:01,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145595746112)>', '<ExcThread(monitor, started 140144430536448)>']
[2025-11-27 22:19:29] 2025-11-28 03:19:01,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:19:29] 2025-11-28 03:19:01,720 | INFO     | [monitor] control thread has ended
[2025-11-27 22:19:29] 2025-11-28 03:19:06,490 | INFO     | all workflow threads have been joined
[2025-11-27 22:19:29] 2025-11-28 03:19:06,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:19:29] 2025-11-28 03:19:06,490 | INFO     | traces error code: 0
[2025-11-27 22:19:29] 2025-11-28 03:19:06,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:19:29] 2025-11-28 03:19:07,313 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:19:29] 2025-11-28 03:19:07,450 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:19:29] 2025-11-28 03:19:07,462 [wrapper] pilotpid: 2480189
[2025-11-27 22:19:29] 2025-11-28 03:19:07,473 [wrapper] Pilot exit status: 0
[2025-11-27 22:19:29] 2025-11-28 03:19:07,737 [wrapper] pandaids: 6898686344
[2025-11-27 22:19:29] 2025-11-28 03:19:09,080 [wrapper] cleanup supervisor_pilot 1915982 2480190
[2025-11-27 22:19:29] 2025-11-28 03:19:09,135 [wrapper] Test setup, not cleaning
[2025-11-27 22:19:29] 2025-11-28 03:19:09,193 [wrapper] apfmon messages muted
[2025-11-27 22:19:29] 2025-11-28 03:19:09,264 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:19:29] 2025-11-28 03:19:09,326 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:19:29]  *** Error codes and diagnostics ***
[2025-11-27 22:19:29]     "exeErrorCode": 0,
[2025-11-27 22:19:29]     "exeErrorDiag": "",
[2025-11-27 22:19:29]     "pilotErrorCode": 0,
[2025-11-27 22:19:29]     "pilotErrorDiag": "",
[2025-11-27 22:19:29]  *** Listing of results directory ***
[2025-11-27 22:19:29] total 1305420
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 22:19:29] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:19:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 14:48 run_atlas
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 14:48 job.xml
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas 407506427 Nov 27 14:48 EVNT.47483658._004294.pool.root.1
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:48 start_atlas.sh
[2025-11-27 22:19:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 14:48 shared
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 14:48 input.tar.gz
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 14:48 boinc_lockfile
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 14:48 pandaJob.out
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas        57 Nov 27 14:48 setup.sh.local
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas    991191 Nov 27 14:49 agis_schedconf.cvmfs.json
[2025-11-27 22:19:29] drwx------. 5 boincer umatlas      4096 Nov 27 14:49 pilot3
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:55 boinc_task_state.xml
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 22:12 init_data.xml
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas 915142141 Nov 27 22:15 HITS.47556185._000572.pool.root.1
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas      1058 Nov 27 22:16 memory_monitor_summary.json
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas   1798913 Nov 27 22:17 log.47556185._000572.job.log.tgz.1
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas      7929 Nov 27 22:17 heartbeat.json
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas        95 Nov 27 22:18 pilot_heartbeat.json
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas      4825 Nov 27 22:19 pilotlog.txt
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas   3293705 Nov 27 22:19 log.47556185._000572.job.log.1
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas       353 Nov 27 22:19 output.list
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:19 runtime_log
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas   5109760 Nov 27 22:19 result.tar.gz
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 22:19 runtime_log.err
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas       659 Nov 27 22:19 M5ANDmXgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm68JKDmDxkt9n.diag
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:19 boinc_mmap_file
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas     21871 Nov 27 22:19 stderr.txt
[2025-11-27 22:19:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:19 wrapper_checkpoint.txt
[2025-11-27 22:19:29] HITS file was successfully produced:
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas 915142141 Nov 27 22:15 shared/HITS.pool.root.1
[2025-11-27 22:19:29]  *** Contents of shared directory: ***
[2025-11-27 22:19:29] total 1297248
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas 407506427 Nov 27 14:48 ATLAS.root_0
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:48 start_atlas.sh
[2025-11-27 22:19:29] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 14:48 input.tar.gz
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas 915142141 Nov 27 22:15 HITS.pool.root.1
[2025-11-27 22:19:29] -rw-------. 1 boincer umatlas   5109760 Nov 27 22:19 result.tar.gz
22:19:31 (2468066): run_atlas exited; CPU time 132430.146818
22:19:31 (2468066): called boinc_finish(0)

</stderr_txt>
]]>

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