Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
17:59:58 (719157): wrapper (7.7.26015): starting
17:59:58 (719157): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:59:58] Arguments: --nthreads 8
[2025-11-27 17:59:58] Threads: 8
[2025-11-27 17:59:58] Checking for CVMFS
[2025-11-27 17:59:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:59:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:59:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:59:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:59:58] 2.11.3.0 1658007 6377 92072 153391 0 90 3549263 4096001 2648 130560 0 10607337 99.929 711734 723 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 17:59:58] CVMFS is ok
[2025-11-27 17:59:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:59:58] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 17:59:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 17:59:58] Further information can be found at the LHC@home message board.
[2025-11-27 17:59:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:59:58] Checking for apptainer binary...
[2025-11-27 17:59:58] apptainer is not installed, using version from CVMFS
[2025-11-27 17:59:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:59:58] officedc-System-Product-Name
[2025-11-27 17:59:58] apptainer works
[2025-11-27 17:59:58] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:59:58] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:59:58] Starting ATLAS job with PandaID=6898490962
[2025-11-27 17:59:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:41:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:41:49] 2025-11-28 06:41:14,965 | INFO     | monitor loop #1518: job 0:6898490962 is in state 'finished'
[2025-11-27 23:41:49] 2025-11-28 06:41:14,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:41:49] 2025-11-28 06:41:16,326 | INFO     | time since job start (20468s) is within the limit (172800.0s)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,071 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:41:49] 2025-11-28 06:41:17,075 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.79415625
[2025-11-27 23:41:49] 2025-11-28 06:41:17,079 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6898490962/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,079 | INFO     | extracted standard info from prmon json
[2025-11-27 23:41:49] 2025-11-28 06:41:17,079 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:41:49] 2025-11-28 06:41:17,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:41:49] 2025-11-28 06:41:17,083 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:41:49] 2025-11-28 06:41:17,084 | INFO     | sum of square deviations: 11657590988.895584
[2025-11-27 23:41:49] 2025-11-28 06:41:17,086 | INFO     | sum of deviations: 212040034644.56717
[2025-11-27 23:41:49] 2025-11-28 06:41:17,086 | INFO     | mean x: 1764301816.238806
[2025-11-27 23:41:49] 2025-11-28 06:41:17,086 | INFO     | mean y: 2858461.017910448
[2025-11-27 23:41:49] 2025-11-28 06:41:17,086 | INFO     | intersect: -32088044247.363262
[2025-11-27 23:41:49] 2025-11-28 06:41:17,086 | INFO     | chi2: 4.318090931877981
[2025-11-27 23:41:49] 2025-11-28 06:41:17,087 | INFO     | sum of square deviations: 11143382491.106112
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | sum of deviations: 285303775876.015
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | mean x: 1764301663.7424242
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | mean y: 2880078.106060606
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | intersect: -45168496463.24466
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | chi2: 2.2952829366203047
[2025-11-27 23:41:49] 2025-11-28 06:41:17,089 | INFO     | current chi2=2.2952829366203047 (change=46.844960589515345 %)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,090 | INFO     | sum of square deviations: 10644523118.307713
[2025-11-27 23:41:49] 2025-11-28 06:41:17,091 | INFO     | sum of deviations: 277697835273.4461
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | mean x: 1764301511.2461538
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | mean y: 2877752.7569230767
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | intersect: -46024802867.341965
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | chi2: 2.2928116509122005
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | current chi2=2.2928116509122005 (change=0.10766802073399401 %)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | right removable region: 324
[2025-11-27 23:41:49] 2025-11-28 06:41:17,092 | INFO     | sum of square deviations: 11143333691.106108
[2025-11-27 23:41:49] 2025-11-28 06:41:17,094 | INFO     | sum of deviations: 121862022944.69691
[2025-11-27 23:41:49] 2025-11-28 06:41:17,094 | INFO     | mean x: 1764301968.7424242
[2025-11-27 23:41:49] 2025-11-28 06:41:17,094 | INFO     | mean y: 2885107.0787878786
[2025-11-27 23:41:49] 2025-11-28 06:41:17,094 | INFO     | intersect: -19291287799.89101
[2025-11-27 23:41:49] 2025-11-28 06:41:17,095 | INFO     | chi2: 2.1263889560031197
[2025-11-27 23:41:49] 2025-11-28 06:41:17,095 | INFO     | current chi2=2.1263889560031197 (change=50.75627193709115 %)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,095 | INFO     | sum of square deviations: 10644425518.307713
[2025-11-27 23:41:49] 2025-11-28 06:41:17,097 | INFO     | sum of deviations: 106757386099.92302
[2025-11-27 23:41:49] 2025-11-28 06:41:17,097 | INFO     | mean x: 1764302121.2461538
[2025-11-27 23:41:49] 2025-11-28 06:41:17,097 | INFO     | mean y: 2889716.7384615387
[2025-11-27 23:41:49] 2025-11-28 06:41:17,097 | INFO     | intersect: -17692032609.58486
[2025-11-27 23:41:49] 2025-11-28 06:41:17,097 | INFO     | chi2: 2.1075898150382857
[2025-11-27 23:41:49] 2025-11-28 06:41:17,098 | INFO     | current chi2=2.1075898150382857 (change=0.8840875942174737 %)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,098 | INFO     | left removable region: 20
[2025-11-27 23:41:49] 2025-11-28 06:41:17,098 | INFO     | sum of square deviations: 8711501497.470373
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | sum of deviations: 147812243346.17426
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | mean x: 1764302090.7598684
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | mean y: 2918699.3585526315
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | intersect: -29932844963.34506
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | chi2: 0.037161141527216536
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | current memory leak: 16.97 B/s (using 304 data points, chi2=0.04)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | could have reported an average CPU frequency of 3958 MHz (15 samples)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,100 | INFO     | ..............................
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . Timing measurements:
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . get job = 0 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . initial setup = 3 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . payload setup = 3 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . stage-in = 0 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . payload execution = 20438 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . stage-out = 3 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | . log creation = 0 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,101 | INFO     | ..............................
[2025-11-27 23:41:49] 2025-11-28 06:41:17,164 | INFO     | 
[2025-11-27 23:41:49] 2025-11-28 06:41:17,164 | INFO     | job summary report
[2025-11-27 23:41:49] 2025-11-28 06:41:17,164 | INFO     | --------------------------------------------------
[2025-11-27 23:41:49] 2025-11-28 06:41:17,164 | INFO     | PanDA job id: 6898490962
[2025-11-27 23:41:49] 2025-11-28 06:41:17,164 | INFO     | task id: 47556161
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | errors: (none)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | pilot state: finished 
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | transexitcode: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | exeerrorcode: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | exeerrordiag: 
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | exitcode: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | exitmsg: OK
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | cpuconsumptiontime: 154481 s
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | nevents: 1000
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | neventsw: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | pid: 729750
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | pgrp: 729750
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | corecount: 8
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | event service: False
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | sizes: {0: 2284323, 3: 2284585, 11: 2284613, 20444: 2319117, 20445: 2319116, 20448: 2328180, 20449: 2328364, 20455: 2328610}
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | --------------------------------------------------
[2025-11-27 23:41:49] 2025-11-28 06:41:17,165 | INFO     | 
[2025-11-27 23:41:49] 2025-11-28 06:41:17,166 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | job 6898490962 has completed (purged errors)
[2025-11-27 23:41:49] 2025-11-28 06:41:17,183 | INFO     | overall cleanup function is called
[2025-11-27 23:41:49] 2025-11-28 06:41:18,198 | INFO     | --- collectZombieJob: --- 10, [729750]
[2025-11-27 23:41:49] 2025-11-28 06:41:18,198 | INFO     | zombie collector waiting for pid 729750
[2025-11-27 23:41:49] 2025-11-28 06:41:18,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:41:49] 2025-11-28 06:41:18,199 | INFO     | collected zombie processes
[2025-11-27 23:41:49] 2025-11-28 06:41:18,199 | INFO     | will attempt to kill all subprocesses of pid=729750
[2025-11-27 23:41:49] 2025-11-28 06:41:18,330 | INFO     | process IDs to be killed: [729750] (in reverse order)
[2025-11-27 23:41:49] 2025-11-28 06:41:18,386 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:41:49] 2025-11-28 06:41:18,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:41:49] 2025-11-28 06:41:18,390 | INFO     | did not find any defunct processes belonging to 729750
[2025-11-27 23:41:49] 2025-11-28 06:41:18,393 | INFO     | did not find any defunct processes belonging to 729750
[2025-11-27 23:41:49] 2025-11-28 06:41:18,394 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:41:49] 2025-11-28 06:41:18,394 | INFO     | ready for new job
[2025-11-27 23:41:49] 2025-11-28 06:41:18,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:41:49] 2025-11-28 06:41:18,396 | INFO     | ***************************************
[2025-11-27 23:41:49] 2025-11-28 06:41:18,396 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:41:49] 2025-11-28 06:41:18,396 | INFO     | ***************************************
[2025-11-27 23:41:49] 2025-11-28 06:41:18,396 | INFO     | 
[2025-11-27 23:41:49] 2025-11-28 06:41:18,398 | INFO     | architecture information:
[2025-11-27 23:41:49] 2025-11-28 06:41:18,398 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:41:49] 2025-11-28 06:41:18,409 | INFO     | cat /etc/os-release:
[2025-11-27 23:41:49] NAME="CentOS Linux"
[2025-11-27 23:41:49] VERSION="7 (Core)"
[2025-11-27 23:41:49] ID="centos"
[2025-11-27 23:41:49] ID_LIKE="rhel fedora"
[2025-11-27 23:41:49] VERSION_ID="7"
[2025-11-27 23:41:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:41:49] ANSI_COLOR="0;31"
[2025-11-27 23:41:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:41:49] HOME_URL="https://www.centos.org/"
[2025-11-27 23:41:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:41:49] 
[2025-11-27 23:41:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:41:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:41:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:41:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:41:49] 
[2025-11-27 23:41:49] 2025-11-28 06:41:18,409 | INFO     | ***************************************
[2025-11-27 23:41:49] 2025-11-28 06:41:18,911 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | INFO     | sufficient remaining disk space (380096217088 B)
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | INFO     | update_server=False
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:41:49] 2025-11-28 06:41:18,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:41:49] 2025-11-28 06:41:18,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:41:49] 2025-11-28 06:41:18,928 | INFO     | aborting loop
[2025-11-27 23:41:49] 2025-11-28 06:41:18,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:41:49] 2025-11-28 06:41:19,573 | INFO     | all payload control threads have been joined
[2025-11-27 23:41:49] 2025-11-28 06:41:19,625 | INFO     | all job control threads have been joined
[2025-11-27 23:41:49] 2025-11-28 06:41:19,783 | INFO     | all data control threads have been joined
[2025-11-27 23:41:49] 2025-11-28 06:41:19,932 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:19,933 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:19,933 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,545 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,579 | INFO     | [payload] control thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,630 | INFO     | [job] control thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,631 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,641 | INFO     | [job] validate thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,699 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,789 | INFO     | [data] control thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:20,933 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:21,334 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:21,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:41:49] 2025-11-28 06:41:26,003 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:41:49] 2025-11-28 06:41:41,522 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:41:49] 2025-11-28 06:41:41,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123788884068160)>', '<ExcThread(monitor, started 123788563814144)>']
[2025-11-27 23:41:49] 2025-11-28 06:41:46,961 | INFO     | all workflow threads have been joined
[2025-11-27 23:41:49] 2025-11-28 06:41:46,961 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:41:49] 2025-11-28 06:41:46,961 | INFO     | traces error code: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:46,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:41:49] 2025-11-28 06:41:49,547 | INFO     | PID=723022 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 23:41:49] 2025-11-28 06:41:49,547 | INFO     | .. there are 4 such processes running
[2025-11-27 23:41:49] 2025-11-28 06:41:49,548 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:41:49] 2025-11-28 06:41:49,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:41:49] 2025-11-28 06:41:49,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:41:49] 2025-11-28 06:41:49,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:41:49] 2025-11-28 06:41:49,548 | INFO     | [monitor] control thread has ended
[2025-11-27 23:41:49] 2025-11-28 06:41:49,615 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:41:49] 2025-11-28 06:41:49,617 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:41:49] 2025-11-28 06:41:49,619 [wrapper] pilotpid: 723022
[2025-11-27 23:41:49] 2025-11-28 06:41:49,621 [wrapper] Pilot exit status: 0
[2025-11-27 23:41:49] 2025-11-28 06:41:49,627 [wrapper] pandaids: 6898490962
[2025-11-27 23:41:49] 2025-11-28 06:41:49,658 [wrapper] cleanup supervisor_pilot  881381 723023
[2025-11-27 23:41:49] 2025-11-28 06:41:49,660 [wrapper] Test setup, not cleaning
[2025-11-27 23:41:49] 2025-11-28 06:41:49,662 [wrapper] apfmon messages muted
[2025-11-27 23:41:49] 2025-11-28 06:41:49,663 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:41:49] 2025-11-28 06:41:49,665 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:41:49]  *** Error codes and diagnostics ***
[2025-11-27 23:41:49]     "exeErrorCode": 0,
[2025-11-27 23:41:49]     "exeErrorDiag": "",
[2025-11-27 23:41:49]     "pilotErrorCode": 0,
[2025-11-27 23:41:49]     "pilotErrorDiag": "",
[2025-11-27 23:41:49]  *** Listing of results directory ***
[2025-11-27 23:41:49] total 1323664
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc    576529 Nov 26 09:12 pilot3.tar.gz
[2025-11-27 23:41:49] -rwx------ 1 boinc boinc     36292 Nov 26 09:36 runpilot2-wrapper.sh
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc      5112 Nov 26 09:37 queuedata.json
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc       100 Nov 27 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:41:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 17:59 run_atlas
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc       105 Nov 27 17:59 job.xml
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc 411507408 Nov 27 17:59 EVNT.47483658._002658.pool.root.1
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:59 start_atlas.sh
[2025-11-27 23:41:49] drwxrwx--x 2 boinc boinc      4096 Nov 27 17:59 shared
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc    590104 Nov 27 17:59 input.tar.gz
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc      9772 Nov 27 17:59 init_data.xml
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc         0 Nov 27 17:59 boinc_lockfile
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc      2787 Nov 27 17:59 pandaJob.out
[2025-11-27 23:41:49] -rw------- 1 boinc boinc    991826 Nov 27 18:00 agis_schedconf.cvmfs.json
[2025-11-27 23:41:49] drwx------ 5 boinc boinc      4096 Nov 27 18:00 pilot3
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc       533 Nov 27 23:36 boinc_task_state.xml
[2025-11-27 23:41:49] -rw------- 1 boinc boinc 930843428 Nov 27 23:40 HITS.47556161._006402.pool.root.1
[2025-11-27 23:41:49] -rw------- 1 boinc boinc      1037 Nov 27 23:41 memory_monitor_summary.json
[2025-11-27 23:41:49] -rw------- 1 boinc boinc   1516240 Nov 27 23:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:41:49] -rw------- 1 boinc boinc   1634475 Nov 27 23:41 log.47556161._006402.job.log.tgz.1
[2025-11-27 23:41:49] -rw------- 1 boinc boinc      8592 Nov 27 23:41 heartbeat.json
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc      8192 Nov 27 23:41 boinc_mmap_file
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc        29 Nov 27 23:41 wrapper_checkpoint.txt
[2025-11-27 23:41:49] -rw------- 1 boinc boinc       821 Nov 27 23:41 pilotlog.txt
[2025-11-27 23:41:49] -rw------- 1 boinc boinc        95 Nov 27 23:41 pilot_heartbeat.json
[2025-11-27 23:41:49] -rw------- 1 boinc boinc   2947543 Nov 27 23:41 log.47556161._006402.job.log.1
[2025-11-27 23:41:49] -rw------- 1 boinc boinc       353 Nov 27 23:41 output.list
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc       620 Nov 27 23:41 runtime_log
[2025-11-27 23:41:49] -rw------- 1 boinc boinc   4597760 Nov 27 23:41 result.tar.gz
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc      8968 Nov 27 23:41 runtime_log.err
[2025-11-27 23:41:49] -rw------- 1 boinc boinc       663 Nov 27 23:41 hXbLDmCgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmk6JKDmaajWKm.diag
[2025-11-27 23:41:49] -rw-r--r-- 1 boinc boinc     21460 Nov 27 23:41 stderr.txt
[2025-11-27 23:41:49] HITS file was successfully produced:
[2025-11-27 23:41:49] -rw------- 1 boinc boinc 930843428 Nov 27 23:40 shared/HITS.pool.root.1
[2025-11-27 23:41:49]  *** Contents of shared directory: ***
[2025-11-27 23:41:49] total 1315988
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc 411507408 Nov 27 17:59 ATLAS.root_0
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:59 start_atlas.sh
[2025-11-27 23:41:49] -rw-r--r-- 2 boinc boinc    590104 Nov 27 17:59 input.tar.gz
[2025-11-27 23:41:49] -rw------- 1 boinc boinc 930843428 Nov 27 23:40 HITS.pool.root.1
[2025-11-27 23:41:49] -rw------- 1 boinc boinc   4597760 Nov 27 23:41 result.tar.gz
23:41:51 (719157): run_atlas exited; CPU time 154347.514266
23:41:51 (719157): called boinc_finish(0)

</stderr_txt>
]]>

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