Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:48:56 (3667220): wrapper (7.7.26015): starting
14:48:56 (3667220): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 14:48:56] Arguments: --nthreads 4
[2025-12-02 14:48:56] Threads: 4
[2025-12-02 14:48:56] Checking for CVMFS
[2025-12-02 14:48:56] No cvmfs_config command found, will try listing directly
[2025-12-02 14:48:56] CVMFS is ok
[2025-12-02 14:48:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:48:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:48:56] Further information can be found at the LHC@home message board.
[2025-12-02 14:48:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:48:56] Checking for apptainer binary...
[2025-12-02 14:48:56] which: no apptainer in ((null))
[2025-12-02 14:48:56] apptainer is not installed, using version from CVMFS
[2025-12-02 14:48:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:48:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-02 14:48:56] apptainer works
[2025-12-02 14:48:56] Set ATHENA_PROC_NUMBER=4
[2025-12-02 14:48:56] Set ATHENA_CORE_NUMBER=4
[2025-12-02 14:48:56] Starting ATLAS job with PandaID=6898687477
[2025-12-02 14:48:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:12:09]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:12:09] 2025-12-03 08:09:23,137 | INFO     | monitor loop #4697: job 0:6898687477 is in state 'finished'
[2025-12-03 09:12:09] 2025-12-03 08:09:23,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:12:09] 2025-12-03 08:09:23,318 | INFO     | time since job start (66014s) is within the limit (172800.0s)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,812 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 09:12:09] 2025-12-03 08:09:24,822 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2697.5096875
[2025-12-03 09:12:09] 2025-12-03 08:09:24,834 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6898687477/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,834 | INFO     | extracted standard info from prmon json
[2025-12-03 09:12:09] 2025-12-03 08:09:24,835 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:12:09] 2025-12-03 08:09:24,835 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:12:09] 2025-12-03 08:09:24,853 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:12:09] 2025-12-03 08:09:24,855 | INFO     | sum of square deviations: 392791458772.7911
[2025-12-03 09:12:09] 2025-12-03 08:09:24,878 | INFO     | sum of deviations: 700344807168.5765
[2025-12-03 09:12:09] 2025-12-03 08:09:24,878 | INFO     | mean x: 1764716347.5397413
[2025-12-03 09:12:09] 2025-12-03 08:09:24,878 | INFO     | mean y: 2301741.4168207026
[2025-12-03 09:12:09] 2025-12-03 08:09:24,878 | INFO     | intersect: -3144176886.1641903
[2025-12-03 09:12:09] 2025-12-03 08:09:24,880 | INFO     | chi2: 4.642626502584531
[2025-12-03 09:12:09] 2025-12-03 08:09:24,881 | INFO     | sum of square deviations: 387371267935.2833
[2025-12-03 09:12:09] 2025-12-03 08:09:24,904 | INFO     | sum of deviations: 946102446796.0883
[2025-12-03 09:12:09] 2025-12-03 08:09:24,904 | INFO     | mean x: 1764716195.0399258
[2025-12-03 09:12:09] 2025-12-03 08:09:24,904 | INFO     | mean y: 2308651.602599814
[2025-12-03 09:12:09] 2025-12-03 08:09:24,904 | INFO     | intersect: -4307774331.389548
[2025-12-03 09:12:09] 2025-12-03 08:09:24,906 | INFO     | chi2: 2.1887805433666556
[2025-12-03 09:12:09] 2025-12-03 08:09:24,906 | INFO     | current chi2=2.1887805433666556 (change=52.85469244299169 %)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,907 | INFO     | sum of square deviations: 382001171060.27515
[2025-12-03 09:12:09] 2025-12-03 08:09:24,930 | INFO     | sum of deviations: 1005477520281.3362
[2025-12-03 09:12:09] 2025-12-03 08:09:24,930 | INFO     | mean x: 1764716042.540112
[2025-12-03 09:12:09] 2025-12-03 08:09:24,930 | INFO     | mean y: 2310337.0270522386
[2025-12-03 09:12:09] 2025-12-03 08:09:24,930 | INFO     | intersect: -4642655293.65147
[2025-12-03 09:12:09] 2025-12-03 08:09:24,932 | INFO     | chi2: 2.0154911183516324
[2025-12-03 09:12:09] 2025-12-03 08:09:24,932 | INFO     | current chi2=2.0154911183516324 (change=7.917167645710128 %)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,932 | INFO     | right removable region: 1071
[2025-12-03 09:12:09] 2025-12-03 08:09:24,933 | INFO     | sum of square deviations: 387371241705.28345
[2025-12-03 09:12:09] 2025-12-03 08:09:24,956 | INFO     | sum of deviations: 505208750448.0346
[2025-12-03 09:12:09] 2025-12-03 08:09:24,956 | INFO     | mean x: 1764716500.0399258
[2025-12-03 09:12:09] 2025-12-03 08:09:24,956 | INFO     | mean y: 2307222.9294336117
[2025-12-03 09:12:09] 2025-12-03 08:09:24,956 | INFO     | intersect: -2299232287.2195973
[2025-12-03 09:12:09] 2025-12-03 08:09:24,958 | INFO     | chi2: 2.860075793821733
[2025-12-03 09:12:09] 2025-12-03 08:09:24,958 | INFO     | current chi2=2.860075793821733 (change=38.39530722039474 %)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,959 | INFO     | sum of square deviations: 382001118600.2751
[2025-12-03 09:12:09] 2025-12-03 08:09:24,982 | INFO     | sum of deviations: 485702455491.2713
[2025-12-03 09:12:09] 2025-12-03 08:09:24,982 | INFO     | mean x: 1764716652.540112
[2025-12-03 09:12:09] 2025-12-03 08:09:24,982 | INFO     | mean y: 2307776.412313433
[2025-12-03 09:12:09] 2025-12-03 08:09:24,982 | INFO     | intersect: -2241474164.660913
[2025-12-03 09:12:09] 2025-12-03 08:09:24,983 | INFO     | chi2: 2.8544623053894598
[2025-12-03 09:12:09] 2025-12-03 08:09:24,984 | INFO     | current chi2=2.8544623053894598 (change=0.19627061787660607 %)
[2025-12-03 09:12:09] 2025-12-03 08:09:24,984 | INFO     | left removable region: 20
[2025-12-03 09:12:09] 2025-12-03 08:09:24,985 | INFO     | sum of square deviations: 359988436865.2408
[2025-12-03 09:12:09] 2025-12-03 08:09:25,007 | INFO     | sum of deviations: 785725842127.8722
[2025-12-03 09:12:09] 2025-12-03 08:09:25,007 | INFO     | mean x: 1764716622.0409133
[2025-12-03 09:12:09] 2025-12-03 08:09:25,007 | INFO     | mean y: 2317257.840152236
[2025-12-03 09:12:09] 2025-12-03 08:09:25,007 | INFO     | intersect: -3849427164.9653187
[2025-12-03 09:12:09] 2025-12-03 08:09:25,008 | INFO     | chi2: 0.1853491051494514
[2025-12-03 09:12:09] 2025-12-03 08:09:25,009 | INFO     | current memory leak: 2.18 B/s (using 1051 data points, chi2=0.19)
[2025-12-03 09:12:09] 2025-12-03 08:09:25,010 | INFO     | could have reported an average CPU frequency of 2662 MHz (40 samples)
[2025-12-03 09:12:09] 2025-12-03 08:09:25,010 | INFO     | ..............................
[2025-12-03 09:12:09] 2025-12-03 08:09:25,010 | INFO     | . Timing measurements:
[2025-12-03 09:12:09] 2025-12-03 08:09:25,010 | INFO     | . get job = 0 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,010 | INFO     | . initial setup = 1 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | . payload setup = 6 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | . stage-in = 0 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | . payload execution = 65976 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | . stage-out = 2 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | . log creation = 0 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,011 | INFO     | ..............................
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | 
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | job summary report
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | --------------------------------------------------
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | PanDA job id: 6898687477
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | task id: 47556161
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | errors: (none)
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:12:09] 2025-12-03 08:09:25,106 | INFO     | pilot state: finished 
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | transexitcode: 0
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | exeerrorcode: 0
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | exeerrordiag: 
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | exitcode: 0
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | exitmsg: OK
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | cpuconsumptiontime: 253285 s
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | nevents: 1000
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | neventsw: 0
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | pid: 3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | pgrp: 3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | corecount: 4
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | event service: False
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | sizes: {0: 2284100, 1: 2284355, 6: 2284617, 12: 2284645, 65986: 2340131, 65987: 2340130, 65991: 2349386, 66000: 2349604}
[2025-12-03 09:12:09] 2025-12-03 08:09:25,107 | INFO     | --------------------------------------------------
[2025-12-03 09:12:09] 2025-12-03 08:09:25,108 | INFO     | 
[2025-12-03 09:12:09] 2025-12-03 08:09:25,108 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-03 09:12:09] 2025-12-03 08:09:25,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,128 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,128 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:12:09] 2025-12-03 08:09:25,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:12:09] 2025-12-03 08:09:25,130 | INFO     | job 6898687477 has completed (purged errors)
[2025-12-03 09:12:09] 2025-12-03 08:09:25,130 | INFO     | overall cleanup function is called
[2025-12-03 09:12:09] 2025-12-03 08:09:26,148 | INFO     | --- collectZombieJob: --- 10, [3678224]
[2025-12-03 09:12:09] 2025-12-03 08:09:26,149 | INFO     | zombie collector waiting for pid 3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:26,149 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:12:09] 2025-12-03 08:09:26,149 | INFO     | collected zombie processes
[2025-12-03 09:12:09] 2025-12-03 08:09:26,149 | INFO     | will attempt to kill all subprocesses of pid=3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:26,622 | INFO     | process IDs to be killed: [3678224] (in reverse order)
[2025-12-03 09:12:09] 2025-12-03 08:09:26,749 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:12:09] 2025-12-03 08:09:26,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:12:09] 2025-12-03 08:09:26,768 | INFO     | did not find any defunct processes belonging to 3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:26,783 | INFO     | did not find any defunct processes belonging to 3678224
[2025-12-03 09:12:09] 2025-12-03 08:09:26,785 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:12:09] 2025-12-03 08:09:26,786 | INFO     | ready for new job
[2025-12-03 09:12:09] 2025-12-03 08:09:26,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:12:09] 2025-12-03 08:09:26,793 | INFO     | ***************************************
[2025-12-03 09:12:09] 2025-12-03 08:09:26,794 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:12:09] 2025-12-03 08:09:26,795 | INFO     | ***************************************
[2025-12-03 09:12:09] 2025-12-03 08:09:26,795 | INFO     | 
[2025-12-03 09:12:09] 2025-12-03 08:09:26,800 | INFO     | architecture information:
[2025-12-03 09:12:09] 2025-12-03 08:09:26,801 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:12:09] 2025-12-03 08:09:26,822 | INFO     | cat /etc/os-release:
[2025-12-03 09:12:09] NAME="CentOS Linux"
[2025-12-03 09:12:09] VERSION="7 (Core)"
[2025-12-03 09:12:09] ID="centos"
[2025-12-03 09:12:09] ID_LIKE="rhel fedora"
[2025-12-03 09:12:09] VERSION_ID="7"
[2025-12-03 09:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:12:09] ANSI_COLOR="0;31"
[2025-12-03 09:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:12:09] HOME_URL="https://www.centos.org/"
[2025-12-03 09:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:12:09] 
[2025-12-03 09:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:12:09] 
[2025-12-03 09:12:09] 2025-12-03 08:09:26,823 | INFO     | ***************************************
[2025-12-03 09:12:09] 2025-12-03 08:09:27,327 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-03 09:12:09] 2025-12-03 08:09:27,354 | INFO     | sufficient remaining disk space (585706242048 B)
[2025-12-03 09:12:09] 2025-12-03 08:09:27,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:12:09] 2025-12-03 08:09:27,354 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:12:09] 2025-12-03 08:09:27,354 | INFO     | update_server=False
[2025-12-03 09:12:09] 2025-12-03 08:09:27,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:12:09] 2025-12-03 08:09:27,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:12:09] 2025-12-03 08:09:27,355 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:12:09] 2025-12-03 08:09:27,355 | INFO     | aborting loop
[2025-12-03 09:12:09] 2025-12-03 08:09:27,742 | INFO     | all job control threads have been joined
[2025-12-03 09:12:09] 2025-12-03 08:09:28,360 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,360 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,407 | INFO     | all data control threads have been joined
[2025-12-03 09:12:09] 2025-12-03 08:09:28,431 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,590 | INFO     | [job] validate thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,607 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,732 | INFO     | all payload control threads have been joined
[2025-12-03 09:12:09] 2025-12-03 08:09:28,753 | INFO     | [job] control thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:28,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:12:09] 2025-12-03 08:09:28,841 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:29,311 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:29,413 | INFO     | [data] control thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:29,716 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:29,738 | INFO     | [payload] control thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:29,770 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:30,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:12:09] 2025-12-03 08:09:30,846 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:31,125 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:31,361 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:12:09] 2025-12-03 08:09:56,975 | INFO     | PID=3671345 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:12:09] 2025-12-03 08:09:56,975 | INFO     | .. there are 5 such processes running
[2025-12-03 09:12:09] 2025-12-03 08:09:56,976 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:12:09] 2025-12-03 08:09:56,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:12:09] 2025-12-03 08:09:56,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:12:09] 2025-12-03 08:09:57,054 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:12:09] 2025-12-03 08:09:58,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22684979828544)>', '<ExcThread(monitor, started 22684391933696)>']
[2025-12-03 09:12:09] 2025-12-03 08:09:58,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:12:09] 2025-12-03 08:09:58,986 | INFO     | [monitor] control thread has ended
[2025-12-03 09:12:09] 2025-12-03 08:10:03,064 | INFO     | all workflow threads have been joined
[2025-12-03 09:12:09] 2025-12-03 08:10:03,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:12:09] 2025-12-03 08:10:03,065 | INFO     | traces error code: 0
[2025-12-03 09:12:09] 2025-12-03 08:10:03,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:12:09] 2025-12-03 08:10:03,310 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:12:09] 2025-12-03 08:10:03,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:12:09] 2025-12-03 08:10:03,326 [wrapper] pilotpid: 3671345
[2025-12-03 09:12:09] 2025-12-03 08:10:03,347 [wrapper] Pilot exit status: 0
[2025-12-03 09:12:09] 2025-12-03 08:10:03,378 [wrapper] pandaids: 6898687477
[2025-12-03 09:12:09] 2025-12-03 08:10:03,459 [wrapper] cleanup supervisor_pilot  392462 3671346
[2025-12-03 09:12:09] 2025-12-03 08:10:03,463 [wrapper] Test setup, not cleaning
[2025-12-03 09:12:09] 2025-12-03 08:10:03,469 [wrapper] apfmon messages muted
[2025-12-03 09:12:09] 2025-12-03 08:10:03,473 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:12:09] 2025-12-03 08:10:03,476 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:12:09]  *** Error codes and diagnostics ***
[2025-12-03 09:12:09]     "exeErrorCode": 0,
[2025-12-03 09:12:09]     "exeErrorDiag": "",
[2025-12-03 09:12:09]     "pilotErrorCode": 0,
[2025-12-03 09:12:09]     "pilotErrorDiag": "",
[2025-12-03 09:12:09]  *** Listing of results directory ***
[2025-12-03 09:12:09] total 1313504
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-03 09:12:09] -rwx------ 1 boinc boinc     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:37 queuedata.json
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc       100 Dec  2 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:12:09] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 14:48 run_atlas
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc       105 Dec  2 14:48 job.xml
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc      6635 Dec  2 14:48 init_data.xml
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc 411238449 Dec  2 14:48 EVNT.47483658._002674.pool.root.1
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc     15847 Dec  2 14:48 start_atlas.sh
[2025-12-03 09:12:09] drwxrwx--x 2 boinc boinc      4096 Dec  2 14:48 shared
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc    590114 Dec  2 14:48 input.tar.gz
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc         0 Dec  2 14:48 boinc_lockfile
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc      2787 Dec  2 14:48 pandaJob.out
[2025-12-03 09:12:09] -rw------- 1 boinc boinc    986791 Dec  2 14:49 agis_schedconf.cvmfs.json
[2025-12-03 09:12:09] drwx------ 5 boinc boinc      4096 Dec  2 14:49 pilot3
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc       531 Dec  3 08:57 boinc_task_state.xml
[2025-12-03 09:12:09] -rw------- 1 boinc boinc 907818030 Dec  3 09:08 HITS.47556161._006565.pool.root.1
[2025-12-03 09:12:09] -rw------- 1 boinc boinc      1057 Dec  3 09:09 memory_monitor_summary.json
[2025-12-03 09:12:09] -rw------- 1 boinc boinc   1516240 Dec  3 09:09 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:12:09] -rw------- 1 boinc boinc   1803549 Dec  3 09:09 log.47556161._006565.job.log.tgz.1
[2025-12-03 09:12:09] -rw------- 1 boinc boinc      8659 Dec  3 09:09 heartbeat.json
[2025-12-03 09:12:09] -rw------- 1 boinc boinc        95 Dec  3 09:09 pilot_heartbeat.json
[2025-12-03 09:12:09] -rw------- 1 boinc boinc      4833 Dec  3 09:10 pilotlog.txt
[2025-12-03 09:12:09] -rw------- 1 boinc boinc   9221661 Dec  3 09:10 log.47556161._006565.job.log.1
[2025-12-03 09:12:09] -rw------- 1 boinc boinc       353 Dec  3 09:10 output.list
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc       620 Dec  3 09:10 runtime_log
[2025-12-03 09:12:09] -rw------- 1 boinc boinc  11048960 Dec  3 09:10 result.tar.gz
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc      9206 Dec  3 09:10 runtime_log.err
[2025-12-03 09:12:09] -rw------- 1 boinc boinc       674 Dec  3 09:10 4bYMDmFgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzENKDmTEvlVn.diag
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc        28 Dec  3 09:12 wrapper_checkpoint.txt
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc      8192 Dec  3 09:12 boinc_mmap_file
[2025-12-03 09:12:09] -rw-r--r-- 1 boinc boinc     21118 Dec  3 09:12 stderr.txt
[2025-12-03 09:12:09] HITS file was successfully produced:
[2025-12-03 09:12:09] -rw------- 1 boinc boinc 907818030 Dec  3 09:08 shared/HITS.pool.root.1
[2025-12-03 09:12:09]  *** Contents of shared directory: ***
[2025-12-03 09:12:09] total 1299544
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc 411238449 Dec  2 14:48 ATLAS.root_0
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc     15847 Dec  2 14:48 start_atlas.sh
[2025-12-03 09:12:09] -rw-r--r-- 2 boinc boinc    590114 Dec  2 14:48 input.tar.gz
[2025-12-03 09:12:09] -rw------- 1 boinc boinc 907818030 Dec  3 09:08 HITS.pool.root.1
[2025-12-03 09:12:09] -rw------- 1 boinc boinc  11048960 Dec  3 09:10 result.tar.gz
09:12:11 (3667220): run_atlas exited; CPU time 255768.135674
09:12:11 (3667220): called boinc_finish(0)

</stderr_txt>
]]>

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