Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:11:07 (1835313): wrapper (7.7.26015): starting
14:11:07 (1835313): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:11:07] Arguments: --nthreads 8
[2025-11-27 14:11:07] Threads: 8
[2025-11-27 14:11:07] Checking for CVMFS
[2025-11-27 14:11:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:11:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:11:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:11:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:11:08] 2.13.3.0 12763 31846 238932 153379 2 712 20708802 40959814 55311 16776704 0 286102510 99.749 175033075 35918 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 14:11:08] CVMFS is ok
[2025-11-27 14:11:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:11:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:11:08] Further information can be found at the LHC@home message board.
[2025-11-27 14:11:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:11:08] Checking for apptainer binary...
[2025-11-27 14:11:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:11:08] Running /usr/bin/apptainer --version
[2025-11-27 14:11:08] apptainer version 1.4.4-1.el9
[2025-11-27 14:11:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:11:08] c7-2-17.aglt2.org
[2025-11-27 14:11:08] apptainer works
[2025-11-27 14:11:08] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:11:08] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:11:09] Starting ATLAS job with PandaID=6898378603
[2025-11-27 14:11:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:01:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:01:41] 2025-11-28 04:00:37,849 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898378603/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,850 | INFO     | extracted standard info from prmon json
[2025-11-27 23:01:41] 2025-11-28 04:00:37,850 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:01:41] 2025-11-28 04:00:37,850 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:01:41] 2025-11-28 04:00:37,857 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:01:41] 2025-11-28 04:00:37,859 | INFO     | sum of square deviations: 43599329569.468956
[2025-11-27 23:01:41] 2025-11-28 04:00:37,871 | INFO     | sum of deviations: 634037595207.8307
[2025-11-27 23:01:41] 2025-11-28 04:00:37,871 | INFO     | mean x: 1764286584.7576923
[2025-11-27 23:01:41] 2025-11-28 04:00:37,871 | INFO     | mean y: 2964327.292307692
[2025-11-27 23:01:41] 2025-11-28 04:00:37,871 | INFO     | intersect: -25653944494.547375
[2025-11-27 23:01:41] 2025-11-28 04:00:37,872 | INFO     | chi2: 7.274015697784113
[2025-11-27 23:01:41] 2025-11-28 04:00:37,872 | INFO     | sum of square deviations: 42353728479.13407
[2025-11-27 23:01:41] 2025-11-28 04:00:37,877 | INFO     | sum of deviations: 808991922635.485
[2025-11-27 23:01:41] 2025-11-28 04:00:37,877 | INFO     | mean x: 1764286432.260194
[2025-11-27 23:01:41] 2025-11-28 04:00:37,877 | INFO     | mean y: 2985726.7650485435
[2025-11-27 23:01:41] 2025-11-28 04:00:37,877 | INFO     | intersect: -33696372609.940617
[2025-11-27 23:01:41] 2025-11-28 04:00:37,878 | INFO     | chi2: 4.150375170087126
[2025-11-27 23:01:41] 2025-11-28 04:00:37,878 | INFO     | current chi2=4.150375170087126 (change=42.94244963821762 %)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,879 | INFO     | sum of square deviations: 41132081326.29216
[2025-11-27 23:01:41] 2025-11-28 04:00:37,884 | INFO     | sum of deviations: 819931935439.7631
[2025-11-27 23:01:41] 2025-11-28 04:00:37,884 | INFO     | mean x: 1764286279.7627451
[2025-11-27 23:01:41] 2025-11-28 04:00:37,884 | INFO     | mean y: 2987072.998039216
[2025-11-27 23:01:41] 2025-11-28 04:00:37,884 | INFO     | intersect: -35166511221.05023
[2025-11-27 23:01:41] 2025-11-28 04:00:37,885 | INFO     | chi2: 3.9935065860709957
[2025-11-27 23:01:41] 2025-11-28 04:00:37,885 | INFO     | current chi2=3.9935065860709957 (change=3.7796241926928578 %)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,885 | INFO     | right removable region: 509
[2025-11-27 23:01:41] 2025-11-28 04:00:37,886 | INFO     | sum of square deviations: 42353646739.13404
[2025-11-27 23:01:41] 2025-11-28 04:00:37,891 | INFO     | sum of deviations: 440636535768.81976
[2025-11-27 23:01:41] 2025-11-28 04:00:37,891 | INFO     | mean x: 1764286737.260194
[2025-11-27 23:01:41] 2025-11-28 04:00:37,891 | INFO     | mean y: 2987982.6058252426
[2025-11-27 23:01:41] 2025-11-28 04:00:37,891 | INFO     | intersect: -18352201141.89743
[2025-11-27 23:01:41] 2025-11-28 04:00:37,892 | INFO     | chi2: 3.8624766256185508
[2025-11-27 23:01:41] 2025-11-28 04:00:37,892 | INFO     | current chi2=3.8624766256185508 (change=46.900353448574776 %)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,892 | INFO     | sum of square deviations: 41132043868.3631
[2025-11-27 23:01:41] 2025-11-28 04:00:37,897 | INFO     | sum of deviations: 390188589684.951
[2025-11-27 23:01:41] 2025-11-28 04:00:37,897 | INFO     | mean x: 1764286889.754902
[2025-11-27 23:01:41] 2025-11-28 04:00:37,898 | INFO     | mean y: 2994278.719607843
[2025-11-27 23:01:41] 2025-11-28 04:00:37,898 | INFO     | intersect: -16733461014.293518
[2025-11-27 23:01:41] 2025-11-28 04:00:37,898 | INFO     | chi2: 3.7319038980683334
[2025-11-27 23:01:41] 2025-11-28 04:00:37,898 | INFO     | current chi2=3.7319038980683334 (change=3.380544148388392 %)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,898 | INFO     | left removable region: 20
[2025-11-27 23:01:41] 2025-11-28 04:00:37,899 | INFO     | sum of square deviations: 36257443127.04686
[2025-11-27 23:01:41] 2025-11-28 04:00:37,903 | INFO     | sum of deviations: 500271773697.34564
[2025-11-27 23:01:41] 2025-11-28 04:00:37,903 | INFO     | mean x: 1764286859.2556238
[2025-11-27 23:01:41] 2025-11-28 04:00:37,904 | INFO     | mean y: 3027809.9652351737
[2025-11-27 23:01:41] 2025-11-28 04:00:37,904 | INFO     | intersect: -24340192237.239983
[2025-11-27 23:01:41] 2025-11-28 04:00:37,904 | INFO     | chi2: 0.30051961505102925
[2025-11-27 23:01:41] 2025-11-28 04:00:37,904 | INFO     | current memory leak: 13.80 B/s (using 489 data points, chi2=0.30)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,905 | INFO     | could have reported an average CPU frequency of 3336 MHz (21 samples)
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | ..............................
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | . Timing measurements:
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | . get job = 0 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | . initial setup = 3 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | . payload setup = 18 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,906 | INFO     | . stage-in = 0 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,907 | INFO     | . payload execution = 31680 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,907 | INFO     | . stage-out = 4 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,907 | INFO     | . log creation = 0 s
[2025-11-27 23:01:41] 2025-11-28 04:00:37,907 | INFO     | ..............................
[2025-11-27 23:01:41] 2025-11-28 04:00:38,013 | INFO     | 
[2025-11-27 23:01:41] 2025-11-28 04:00:38,013 | INFO     | job summary report
[2025-11-27 23:01:41] 2025-11-28 04:00:38,013 | INFO     | --------------------------------------------------
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | PanDA job id: 6898378603
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | task id: 47556173
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | errors: (none)
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | pilot state: finished 
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | transexitcode: 0
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | exeerrorcode: 0
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | exeerrordiag: 
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | exitcode: 0
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | exitmsg: OK
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | cpuconsumptiontime: 180525 s
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | nevents: 1000
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | neventsw: 0
[2025-11-27 23:01:41] 2025-11-28 04:00:38,014 | INFO     | pid: 1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | pgrp: 1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | corecount: 8
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | event service: False
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | sizes: {0: 2284145, 1: 2284344, 10: 2284606, 11: 2284634, 31702: 2323929, 31708: 2332923, 31710: 2333107, 31719: 2333353}
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | --------------------------------------------------
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | 
[2025-11-27 23:01:41] 2025-11-28 04:00:38,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 23:01:41] 2025-11-28 04:00:38,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | job 6898378603 has completed (purged errors)
[2025-11-27 23:01:41] 2025-11-28 04:00:38,045 | INFO     | overall cleanup function is called
[2025-11-27 23:01:41] 2025-11-28 04:00:39,089 | INFO     | --- collectZombieJob: --- 10, [1850798]
[2025-11-27 23:01:41] 2025-11-28 04:00:39,089 | INFO     | zombie collector waiting for pid 1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:39,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:01:41] 2025-11-28 04:00:39,095 | INFO     | collected zombie processes
[2025-11-27 23:01:41] 2025-11-28 04:00:39,095 | INFO     | will attempt to kill all subprocesses of pid=1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:39,260 | INFO     | PID=1839103 has CPU usage=19.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 23:01:41] 2025-11-28 04:00:39,261 | INFO     | .. there are 62 such processes running
[2025-11-27 23:01:41] 2025-11-28 04:00:40,437 | INFO     | process IDs to be killed: [1850798] (in reverse order)
[2025-11-27 23:01:41] 2025-11-28 04:00:40,669 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:01:41] 2025-11-28 04:00:40,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:01:41] 2025-11-28 04:00:40,728 | INFO     | did not find any defunct processes belonging to 1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:40,825 | INFO     | did not find any defunct processes belonging to 1850798
[2025-11-27 23:01:41] 2025-11-28 04:00:40,844 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:01:41] 2025-11-28 04:00:40,845 | INFO     | ready for new job
[2025-11-27 23:01:41] 2025-11-28 04:00:40,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:01:41] 2025-11-28 04:00:40,851 | INFO     | ***************************************
[2025-11-27 23:01:41] 2025-11-28 04:00:40,851 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:01:41] 2025-11-28 04:00:40,851 | INFO     | ***************************************
[2025-11-27 23:01:41] 2025-11-28 04:00:40,851 | INFO     | 
[2025-11-27 23:01:41] 2025-11-28 04:00:40,861 | INFO     | architecture information:
[2025-11-27 23:01:41] 2025-11-28 04:00:40,862 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:01:41] 2025-11-28 04:00:40,906 | INFO     | cat /etc/os-release:
[2025-11-27 23:01:41] NAME="CentOS Linux"
[2025-11-27 23:01:41] VERSION="7 (Core)"
[2025-11-27 23:01:41] ID="centos"
[2025-11-27 23:01:41] ID_LIKE="rhel fedora"
[2025-11-27 23:01:41] VERSION_ID="7"
[2025-11-27 23:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:01:41] ANSI_COLOR="0;31"
[2025-11-27 23:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:01:41] HOME_URL="https://www.centos.org/"
[2025-11-27 23:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:01:41] 
[2025-11-27 23:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:01:41] 
[2025-11-27 23:01:41] 2025-11-28 04:00:40,906 | INFO     | ***************************************
[2025-11-27 23:01:41] 2025-11-28 04:00:41,411 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 23:01:41] 2025-11-28 04:00:41,459 | INFO     | sufficient remaining disk space (118988210176 B)
[2025-11-27 23:01:41] 2025-11-28 04:00:41,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:01:41] 2025-11-28 04:00:41,459 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:01:41] 2025-11-28 04:00:41,459 | INFO     | update_server=False
[2025-11-27 23:01:41] 2025-11-28 04:00:41,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:01:41] 2025-11-28 04:00:41,492 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 23:01:41] 2025-11-28 04:00:41,492 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 23:01:41] 2025-11-28 04:00:41,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:01:41] 2025-11-28 04:00:41,493 | INFO     | will abort loop
[2025-11-27 23:01:41] 2025-11-28 04:00:41,553 | INFO     | all job control threads have been joined
[2025-11-27 23:01:41] 2025-11-28 04:00:42,351 | INFO     | all data control threads have been joined
[2025-11-27 23:01:41] 2025-11-28 04:00:42,417 | INFO     | all payload control threads have been joined
[2025-11-27 23:01:41] 2025-11-28 04:00:42,465 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:42,498 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:42,559 | INFO     | [job] control thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:42,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:01:41] 2025-11-28 04:00:43,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:01:41] 2025-11-28 04:00:43,230 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,325 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,358 | INFO     | [data] control thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,424 | INFO     | [payload] control thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,491 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,552 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,811 | INFO     | [job] validate thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,911 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:43,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:01:41] 2025-11-28 04:00:43,962 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:44,030 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:44,932 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:00:47,949 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:01:41] 2025-11-28 04:01:10,352 | INFO     | 31746s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 23:01:41] 2025-11-28 04:01:12,980 | INFO     | PID=1839103 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:01:41] 2025-11-28 04:01:12,980 | INFO     | .. there are 62 such processes running
[2025-11-27 23:01:41] 2025-11-28 04:01:12,981 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:01:41] 2025-11-28 04:01:12,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:01:41] 2025-11-28 04:01:12,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:01:41] 2025-11-28 04:01:34,108 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:01:41] 2025-11-28 04:01:35,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140552306882368)>', '<ExcThread(monitor, started 140551949096704)>']
[2025-11-27 23:01:41] 2025-11-28 04:01:35,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:01:41] 2025-11-28 04:01:35,129 | INFO     | [monitor] control thread has ended
[2025-11-27 23:01:41] 2025-11-28 04:01:40,154 | INFO     | all workflow threads have been joined
[2025-11-27 23:01:41] 2025-11-28 04:01:40,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:01:41] 2025-11-28 04:01:40,155 | INFO     | traces error code: 0
[2025-11-27 23:01:41] 2025-11-28 04:01:40,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:01:41] 2025-11-28 04:01:40,972 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:01:41] 2025-11-28 04:01:40,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:01:41] 2025-11-28 04:01:40,976 [wrapper] pilotpid: 1839103
[2025-11-27 23:01:41] 2025-11-28 04:01:40,978 [wrapper] Pilot exit status: 0
[2025-11-27 23:01:41] 2025-11-28 04:01:41,014 [wrapper] pandaids: 6898378603
[2025-11-27 23:01:41] 2025-11-28 04:01:41,165 [wrapper] cleanup supervisor_pilot 2753442 1839104
[2025-11-27 23:01:41] 2025-11-28 04:01:41,168 [wrapper] Test setup, not cleaning
[2025-11-27 23:01:41] 2025-11-28 04:01:41,171 [wrapper] apfmon messages muted
[2025-11-27 23:01:41] 2025-11-28 04:01:41,177 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:01:41] 2025-11-28 04:01:41,180 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:01:41]  *** Error codes and diagnostics ***
[2025-11-27 23:01:41]     "exeErrorCode": 0,
[2025-11-27 23:01:41]     "exeErrorDiag": "",
[2025-11-27 23:01:41]     "pilotErrorCode": 0,
[2025-11-27 23:01:41]     "pilotErrorDiag": "",
[2025-11-27 23:01:41]  *** Listing of results directory ***
[2025-11-27 23:01:41] total 1313516
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 23:01:41] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas       100 Nov 27 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:01:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 14:11 run_atlas
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas       105 Nov 27 14:11 job.xml
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas 408050149 Nov 27 14:11 EVNT.47483658._003210.pool.root.1
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:11 start_atlas.sh
[2025-11-27 23:01:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 14:11 shared
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 14:11 input.tar.gz
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas         0 Nov 27 14:11 boinc_lockfile
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas      2787 Nov 27 14:11 pandaJob.out
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas        57 Nov 27 14:11 setup.sh.local
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas    991223 Nov 27 14:11 agis_schedconf.cvmfs.json
[2025-11-27 23:01:41] drwx------. 5 boincer umatlas      4096 Nov 27 14:11 pilot3
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:53 boinc_task_state.xml
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas 922134570 Nov 27 22:59 HITS.47556173._001665.pool.root.1
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas      1073 Nov 27 23:00 memory_monitor_summary.json
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas   1762644 Nov 27 23:00 log.47556173._001665.job.log.tgz.1
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas      6945 Nov 27 23:00 init_data.xml
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas      8633 Nov 27 23:00 heartbeat.json
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas        95 Nov 27 23:01 pilot_heartbeat.json
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas      5127 Nov 27 23:01 pilotlog.txt
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:01 boinc_mmap_file
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:01 wrapper_checkpoint.txt
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas   3703798 Nov 27 23:01 log.47556173._001665.job.log.1
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas       353 Nov 27 23:01 output.list
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:01 runtime_log
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas   5488640 Nov 27 23:01 result.tar.gz
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 23:01 runtime_log.err
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas       664 Nov 27 23:01 0xiKDmNgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE8JKDmFFHXhm.diag
[2025-11-27 23:01:41] -rw-r--r--. 1 boincer umatlas     21420 Nov 27 23:01 stderr.txt
[2025-11-27 23:01:41] HITS file was successfully produced:
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas 922134570 Nov 27 22:59 shared/HITS.pool.root.1
[2025-11-27 23:01:41]  *** Contents of shared directory: ***
[2025-11-27 23:01:41] total 1304976
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas 408050149 Nov 27 14:11 ATLAS.root_0
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:11 start_atlas.sh
[2025-11-27 23:01:41] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 14:11 input.tar.gz
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas 922134570 Nov 27 22:59 HITS.pool.root.1
[2025-11-27 23:01:41] -rw-------. 1 boincer umatlas   5488640 Nov 27 23:01 result.tar.gz
23:01:43 (1835313): run_atlas exited; CPU time 180713.607604
23:01:43 (1835313): called boinc_finish(0)

</stderr_txt>
]]>

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