Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:22:54 (1735936): wrapper (7.7.26015): starting
14:22:54 (1735936): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 14:22:54] Arguments: --nthreads 9
[2025-11-27 14:22:54] Threads: 9
[2025-11-27 14:22:54] Checking for CVMFS
[2025-11-27 14:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:22:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:22:57] 2.13.3.0 14106 31855 266608 153382 0 370 36224040 40960001 61128 16776704 0 403174079 99.751 264531256 47192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 14:22:57] CVMFS is ok
[2025-11-27 14:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:22:57] Further information can be found at the LHC@home message board.
[2025-11-27 14:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:22:57] Checking for apptainer binary...
[2025-11-27 14:22:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:22:57] Running /usr/bin/apptainer --version
[2025-11-27 14:22:57] apptainer version 1.4.4-1.el9
[2025-11-27 14:22:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:22:57] c8-7-5.aglt2.org
[2025-11-27 14:22:57] apptainer works
[2025-11-27 14:22:57] Set ATHENA_PROC_NUMBER=9
[2025-11-27 14:22:57] Set ATHENA_CORE_NUMBER=9
[2025-11-27 14:22:57] Starting ATLAS job with PandaID=6898687104
[2025-11-27 14:22:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:19:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:19:08] 2025-11-28 03:18:19,925 | INFO     | monitor loop #1625: job 0:6898687104 is in state 'finished'
[2025-11-27 22:19:08] 2025-11-28 03:18:19,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:08] 2025-11-28 03:18:22,009 | INFO     | PID=1740978 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:19:08] 2025-11-28 03:18:22,009 | INFO     | .. there are 100 such processes running
[2025-11-27 22:19:08] 2025-11-28 03:18:22,439 | INFO     | monitor loop #1626: job 0:6898687104 is in state 'finished'
[2025-11-27 22:19:08] 2025-11-28 03:18:22,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:08] 2025-11-28 03:18:23,010 | INFO     | time since job start (28455s) is within the limit (172800.0s)
[2025-11-27 22:19:08] 2025-11-28 03:18:24,954 | INFO     | monitor loop #1627: job 0:6898687104 is in state 'finished'
[2025-11-27 22:19:08] 2025-11-28 03:18:24,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:08] 2025-11-28 03:18:25,017 | INFO     | time since job start (28457s) is within the limit (172800.0s)
[2025-11-27 22:19:08] 2025-11-28 03:18:27,024 | INFO     | time since job start (28459s) is within the limit (172800.0s)
[2025-11-27 22:19:08] 2025-11-28 03:18:27,459 | INFO     | monitor loop #1628: job 0:6898687104 is in state 'finished'
[2025-11-27 22:19:08] 2025-11-28 03:18:27,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:08] 2025-11-28 03:18:29,031 | INFO     | time since job start (28461s) is within the limit (172800.0s)
[2025-11-27 22:19:08] 2025-11-28 03:18:29,668 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:19:08] 2025-11-28 03:18:29,708 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.31078125
[2025-11-27 22:19:08] 2025-11-28 03:18:30,062 | INFO     | monitor loop #1629: job 0:6898687104 is in state 'finished'
[2025-11-27 22:19:08] 2025-11-28 03:18:30,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,064 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6898687104/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,064 | INFO     | extracted standard info from prmon json
[2025-11-27 22:19:08] 2025-11-28 03:18:30,064 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:19:08] 2025-11-28 03:18:30,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:19:08] 2025-11-28 03:18:30,252 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:19:08] 2025-11-28 03:18:30,253 | INFO     | sum of square deviations: 30777199651.304543
[2025-11-27 22:19:08] 2025-11-28 03:18:30,378 | INFO     | sum of deviations: 440733487175.67615
[2025-11-27 22:19:08] 2025-11-28 03:18:30,397 | INFO     | mean x: 1764285724.8552916
[2025-11-27 22:19:08] 2025-11-28 03:18:30,397 | INFO     | mean y: 2809002.6220302377
[2025-11-27 22:19:08] 2025-11-28 03:18:30,397 | INFO     | intersect: -25261991196.85873
[2025-11-27 22:19:08] 2025-11-28 03:18:30,397 | INFO     | chi2: 32.067480569077475
[2025-11-27 22:19:08] 2025-11-28 03:18:30,398 | INFO     | sum of square deviations: 29791108251.406128
[2025-11-27 22:19:08] 2025-11-28 03:18:30,400 | INFO     | sum of deviations: 585944706382.9218
[2025-11-27 22:19:08] 2025-11-28 03:18:30,400 | INFO     | mean x: 1764285572.3755457
[2025-11-27 22:19:08] 2025-11-28 03:18:30,563 | INFO     | mean y: 2831444.81441048
[2025-11-27 22:19:08] 2025-11-28 03:18:30,563 | INFO     | intersect: -34697918287.529655
[2025-11-27 22:19:08] 2025-11-28 03:18:30,564 | INFO     | chi2: 28.756338250935613
[2025-11-27 22:19:08] 2025-11-28 03:18:30,564 | INFO     | current chi2=28.756338250935613 (change=10.325545566354162 %)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,564 | INFO     | right removable region: 457
[2025-11-27 22:19:08] 2025-11-28 03:18:30,564 | INFO     | sum of square deviations: 29790584261.406105
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | sum of deviations: 250296113365.63696
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | mean x: 1764285877.3755457
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | mean y: 2838437.9497816595
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | intersect: -14820432367.956152
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | chi2: 26.964807894677946
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | current chi2=26.964807894677946 (change=15.912296768708458 %)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,570 | INFO     | left removable region: 10
[2025-11-27 22:19:08] 2025-11-28 03:18:30,576 | INFO     | sum of square deviations: 27695317334.259544
[2025-11-27 22:19:08] 2025-11-28 03:18:30,579 | INFO     | sum of deviations: 254107976853.67105
[2025-11-27 22:19:08] 2025-11-28 03:18:30,579 | INFO     | mean x: 1764285846.9217002
[2025-11-27 22:19:08] 2025-11-28 03:18:30,579 | INFO     | mean y: 2894730.590604027
[2025-11-27 22:19:08] 2025-11-28 03:18:30,579 | INFO     | intersect: -16184647074.47335
[2025-11-27 22:19:08] 2025-11-28 03:18:30,580 | INFO     | chi2: 18.73278385270253
[2025-11-27 22:19:08] 2025-11-28 03:18:30,580 | INFO     | current memory leak: 9.18 B/s (using 447 data points, chi2=18.73)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,580 | INFO     | could have reported an average CPU frequency of 3799 MHz (19 samples)
[2025-11-27 22:19:08] 2025-11-28 03:18:30,580 | INFO     | ..............................
[2025-11-27 22:19:08] 2025-11-28 03:18:30,580 | INFO     | . Timing measurements:
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . get job = 0 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . initial setup = 3 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . payload setup = 60 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . stage-in = 0 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . payload execution = 28238 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . stage-out = 8 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | . log creation = 3 s
[2025-11-27 22:19:08] 2025-11-28 03:18:30,581 | INFO     | ..............................
[2025-11-27 22:19:08] 2025-11-28 03:18:31,088 | INFO     | time since job start (28463s) is within the limit (172800.0s)
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | 
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | job summary report
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | --------------------------------------------------
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | PanDA job id: 6898687104
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | task id: 47556173
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | errors: (none)
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | pilot state: finished 
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | transexitcode: 0
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | exeerrorcode: 0
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | exeerrordiag: 
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | exitcode: 0
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | exitmsg: OK
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | cpuconsumptiontime: 129780 s
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | nevents: 1000
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | neventsw: 0
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | pid: 1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | pgrp: 1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:31,122 | INFO     | corecount: 9
[2025-11-27 22:19:08] 2025-11-28 03:18:31,123 | INFO     | event service: False
[2025-11-27 22:19:08] 2025-11-28 03:18:31,123 | INFO     | sizes: {0: 2284316, 1: 2284316, 11: 2284344, 22: 2284372, 33: 2284400, 34: 2284718, 44: 2284874, 28303: 2322220, 28304: 2322219, 28314: 2331269, 28315: 2331325, 28
[2025-11-27 22:19:08] 2025-11-28 03:18:31,123 | INFO     | --------------------------------------------------
[2025-11-27 22:19:08] 2025-11-28 03:18:31,123 | INFO     | 
[2025-11-27 22:19:08] 2025-11-28 03:18:31,123 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | job 6898687104 has completed (purged errors)
[2025-11-27 22:19:08] 2025-11-28 03:18:31,230 | INFO     | overall cleanup function is called
[2025-11-27 22:19:08] 2025-11-28 03:18:32,246 | INFO     | --- collectZombieJob: --- 10, [1754952]
[2025-11-27 22:19:08] 2025-11-28 03:18:32,246 | INFO     | zombie collector waiting for pid 1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:32,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:19:08] 2025-11-28 03:18:32,246 | INFO     | collected zombie processes
[2025-11-27 22:19:08] 2025-11-28 03:18:32,246 | INFO     | will attempt to kill all subprocesses of pid=1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:33,666 | INFO     | process IDs to be killed: [1754952] (in reverse order)
[2025-11-27 22:19:08] 2025-11-28 03:18:34,407 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:19:08] 2025-11-28 03:18:34,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:19:08] 2025-11-28 03:18:34,488 | INFO     | did not find any defunct processes belonging to 1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:34,567 | INFO     | did not find any defunct processes belonging to 1754952
[2025-11-27 22:19:08] 2025-11-28 03:18:34,579 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:19:08] 2025-11-28 03:18:34,579 | INFO     | ready for new job
[2025-11-27 22:19:08] 2025-11-28 03:18:34,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:19:08] 2025-11-28 03:18:34,584 | INFO     | ***************************************
[2025-11-27 22:19:08] 2025-11-28 03:18:34,584 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:19:08] 2025-11-28 03:18:34,584 | INFO     | ***************************************
[2025-11-27 22:19:08] 2025-11-28 03:18:34,585 | INFO     | 
[2025-11-27 22:19:08] 2025-11-28 03:18:34,596 | INFO     | architecture information:
[2025-11-27 22:19:08] 2025-11-28 03:18:34,602 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:19:08] 2025-11-28 03:18:34,666 | INFO     | cat /etc/os-release:
[2025-11-27 22:19:08] NAME="CentOS Linux"
[2025-11-27 22:19:08] VERSION="7 (Core)"
[2025-11-27 22:19:08] ID="centos"
[2025-11-27 22:19:08] ID_LIKE="rhel fedora"
[2025-11-27 22:19:08] VERSION_ID="7"
[2025-11-27 22:19:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:19:08] ANSI_COLOR="0;31"
[2025-11-27 22:19:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:19:08] HOME_URL="https://www.centos.org/"
[2025-11-27 22:19:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:19:08] 
[2025-11-27 22:19:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:19:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:19:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:19:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:19:08] 
[2025-11-27 22:19:08] 2025-11-28 03:18:34,666 | INFO     | ***************************************
[2025-11-27 22:19:08] 2025-11-28 03:18:35,169 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 22:19:08] 2025-11-28 03:18:35,250 | INFO     | sufficient remaining disk space (161927397376 B)
[2025-11-27 22:19:08] 2025-11-28 03:18:35,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:19:08] 2025-11-28 03:18:35,250 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:19:08] 2025-11-28 03:18:35,250 | INFO     | update_server=False
[2025-11-27 22:19:08] 2025-11-28 03:18:35,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:19:08] 2025-11-28 03:18:35,304 | INFO     | all payload control threads have been joined
[2025-11-27 22:19:08] 2025-11-28 03:18:35,390 | INFO     | all data control threads have been joined
[2025-11-27 22:19:08] 2025-11-28 03:18:35,516 | INFO     | all job control threads have been joined
[2025-11-27 22:19:08] 2025-11-28 03:18:36,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:19:08] 2025-11-28 03:18:36,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:19:08] 2025-11-28 03:18:36,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:19:08] 2025-11-28 03:18:36,109 | INFO     | aborting loop
[2025-11-27 22:19:08] 2025-11-28 03:18:36,256 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,310 | INFO     | [payload] control thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,396 | INFO     | [data] control thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,466 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,522 | INFO     | [job] control thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,692 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,692 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:36,909 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,087 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,126 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,422 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,552 | INFO     | [job] validate thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:37,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:19:08] 2025-11-28 03:18:37,672 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:38,095 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:41,662 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:19:08] 2025-11-28 03:18:57,907 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:19:08] 2025-11-28 03:18:59,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139954249660224)>', '<ExcThread(monitor, started 139953321277184)>']
[2025-11-27 22:19:08] 2025-11-28 03:19:04,918 | INFO     | all workflow threads have been joined
[2025-11-27 22:19:08] 2025-11-28 03:19:04,918 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:19:08] 2025-11-28 03:19:04,918 | INFO     | traces error code: 0
[2025-11-27 22:19:08] 2025-11-28 03:19:04,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:19:08] 2025-11-28 03:19:06,335 | INFO     | PID=1740978 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:19:08] 2025-11-28 03:19:06,335 | INFO     | .. there are 101 such processes running
[2025-11-27 22:19:08] 2025-11-28 03:19:06,336 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:19:08] 2025-11-28 03:19:06,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:19:08] 2025-11-28 03:19:06,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:19:08] 2025-11-28 03:19:06,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:19:08] 2025-11-28 03:19:06,336 | INFO     | [monitor] control thread has ended
[2025-11-27 22:19:08] 2025-11-28 03:19:07,464 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:19:08] 2025-11-28 03:19:07,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:19:08] 2025-11-28 03:19:07,507 [wrapper] pilotpid: 1740978
[2025-11-27 22:19:08] 2025-11-28 03:19:07,620 [wrapper] Pilot exit status: 0
[2025-11-27 22:19:08] 2025-11-28 03:19:07,833 [wrapper] pandaids: 6898687104
[2025-11-27 22:19:08] 2025-11-28 03:19:08,047 [wrapper] cleanup supervisor_pilot 1471885 1740979
[2025-11-27 22:19:08] 2025-11-28 03:19:08,059 [wrapper] Test setup, not cleaning
[2025-11-27 22:19:08] 2025-11-28 03:19:08,104 [wrapper] apfmon messages muted
[2025-11-27 22:19:08] 2025-11-28 03:19:08,131 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:19:08] 2025-11-28 03:19:08,163 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:19:08]  *** Error codes and diagnostics ***
[2025-11-27 22:19:08]     "exeErrorCode": 0,
[2025-11-27 22:19:08]     "exeErrorDiag": "",
[2025-11-27 22:19:08]     "pilotErrorCode": 0,
[2025-11-27 22:19:08]     "pilotErrorDiag": "",
[2025-11-27 22:19:08]  *** Listing of results directory ***
[2025-11-27 22:19:08] total 1288228
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 22:19:08] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas       100 Nov 27 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:19:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 14:22 run_atlas
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas       105 Nov 27 14:22 job.xml
[2025-11-27 22:19:08] -rw-r--r--. 2 boincer umatlas 407918392 Nov 27 14:22 EVNT.47483658._003222.pool.root.1
[2025-11-27 22:19:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:22 start_atlas.sh
[2025-11-27 22:19:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 14:22 shared
[2025-11-27 22:19:08] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 14:22 input.tar.gz
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas         0 Nov 27 14:22 boinc_lockfile
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas      2787 Nov 27 14:22 pandaJob.out
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas        57 Nov 27 14:22 setup.sh.local
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas    991191 Nov 27 14:24 agis_schedconf.cvmfs.json
[2025-11-27 22:19:08] drwx------. 5 boincer umatlas      4096 Nov 27 14:24 pilot3
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:53 boinc_task_state.xml
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 22:11 init_data.xml
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas 896704637 Nov 27 22:16 HITS.47556173._001789.pool.root.1
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas      1051 Nov 27 22:17 memory_monitor_summary.json
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas   1830137 Nov 27 22:17 log.47556173._001789.job.log.tgz.1
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas        95 Nov 27 22:18 pilot_heartbeat.json
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas      8580 Nov 27 22:18 heartbeat.json
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:19 boinc_mmap_file
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:19 wrapper_checkpoint.txt
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas       824 Nov 27 22:19 pilotlog.txt
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas   3472108 Nov 27 22:19 log.47556173._001789.job.log.1
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas       353 Nov 27 22:19 output.list
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:19 runtime_log
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas   5324800 Nov 27 22:19 result.tar.gz
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas       659 Nov 27 22:19 u4yMDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNGNKDmsT7DYn.diag
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 22:19 runtime_log.err
[2025-11-27 22:19:08] -rw-r--r--. 1 boincer umatlas     21900 Nov 27 22:19 stderr.txt
[2025-11-27 22:19:08] HITS file was successfully produced:
[2025-11-27 22:19:08] -rw-------. 1 boincer umatlas 896704637 Nov 27 22:16 shared/HITS.pool.root.1
[2025-11-27 22:19:08]  *** Contents of shared directory: ***
[2025-11-27 22:19:09] total 1279856
[2025-11-27 22:19:09] -rw-r--r--. 2 boincer umatlas 407918392 Nov 27 14:22 ATLAS.root_0
[2025-11-27 22:19:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:22 start_atlas.sh
[2025-11-27 22:19:09] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 14:22 input.tar.gz
[2025-11-27 22:19:09] -rw-------. 1 boincer umatlas 896704637 Nov 27 22:16 HITS.pool.root.1
[2025-11-27 22:19:09] -rw-------. 1 boincer umatlas   5324800 Nov 27 22:19 result.tar.gz
22:19:10 (1735936): run_atlas exited; CPU time 130340.094911
22:19:10 (1735936): called boinc_finish(0)

</stderr_txt>
]]>

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