Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:48:12 (20182): wrapper (7.7.26015): starting
13:48:12 (20182): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 13:48:12] Arguments: --nthreads 12
[2025-11-27 13:48:12] Threads: 12
[2025-11-27 13:48:12] Checking for CVMFS
[2025-11-27 13:48:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:48:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:48:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:48:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:48:12] 2.11.2.0 3035 289456 95680 153379 1 81 10949593 20275201 1 130560 3 129890504 99.969 17184596 14330 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 13:48:12] CVMFS is ok
[2025-11-27 13:48:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:48:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:48:12] Further information can be found at the LHC@home message board.
[2025-11-27 13:48:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:48:12] Checking for apptainer binary...
[2025-11-27 13:48:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:48:12] Running /usr/bin/apptainer --version
[2025-11-27 13:48:12] apptainer version 1.3.2-1.el7
[2025-11-27 13:48:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:48:14] c-205-31.aglt2.org
[2025-11-27 13:48:14] apptainer works
[2025-11-27 13:48:14] Set ATHENA_PROC_NUMBER=12
[2025-11-27 13:48:14] Set ATHENA_CORE_NUMBER=12
[2025-11-27 13:48:14] Starting ATLAS job with PandaID=6898718847
[2025-11-27 13:48:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:12:56 (7909): wrapper (7.7.26015): starting
20:12:56 (7909): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 20:12:56] Arguments: --nthreads 12
[2025-11-27 20:12:56] Threads: 12
[2025-11-27 20:12:56] This job has been restarted, cleaning up previous attempt
[2025-11-27 20:12:56] Checking for CVMFS
[2025-11-27 20:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:12:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:12:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:12:56] 2.11.2.0 3035 289840 97268 153391 1 56 14380160 20275200 1 130560 3 130047841 99.969 17201861 14319 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 20:12:56] CVMFS is ok
[2025-11-27 20:12:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:12:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:12:56] Further information can be found at the LHC@home message board.
[2025-11-27 20:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:12:56] Checking for apptainer binary...
[2025-11-27 20:12:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:12:56] Running /usr/bin/apptainer --version
[2025-11-27 20:12:56] apptainer version 1.3.2-1.el7
[2025-11-27 20:12:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:12:58] c-205-31.aglt2.org
[2025-11-27 20:12:58] apptainer works
[2025-11-27 20:12:58] Set ATHENA_PROC_NUMBER=12
[2025-11-27 20:12:58] Set ATHENA_CORE_NUMBER=12
[2025-11-27 20:12:58] Starting ATLAS job with PandaID=6898718847
[2025-11-27 20:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:27:00]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:27:01] 2025-11-28 08:26:19,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:01] 2025-11-28 08:26:19,795 | INFO     | time since job start (25986s) is within the limit (172800.0s)
[2025-11-28 03:27:01] 2025-11-28 08:26:19,795 | INFO     | 25989s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 03:27:01] 2025-11-28 08:26:20,199 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 03:27:01] 2025-11-28 08:26:20,203 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-28 03:27:01] 2025-11-28 08:26:20,205 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898718847/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,205 | INFO     | extracted standard info from prmon json
[2025-11-28 03:27:01] 2025-11-28 08:26:20,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:27:01] 2025-11-28 08:26:20,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:27:01] 2025-11-28 08:26:20,212 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:27:01] 2025-11-28 08:26:20,213 | INFO     | sum of square deviations: 23971835981.955463
[2025-11-28 03:27:01] 2025-11-28 08:26:20,217 | INFO     | sum of deviations: 284631995720.6408
[2025-11-28 03:27:01] 2025-11-28 08:26:20,217 | INFO     | mean x: 1764305385.730047
[2025-11-28 03:27:01] 2025-11-28 08:26:20,217 | INFO     | mean y: 3439958.4577464787
[2025-11-28 03:27:01] 2025-11-28 08:26:20,217 | INFO     | intersect: -20945216764.33258
[2025-11-28 03:27:01] 2025-11-28 08:26:20,218 | INFO     | chi2: 6.755578676102565
[2025-11-28 03:27:01] 2025-11-28 08:26:20,218 | INFO     | sum of square deviations: 23137645579.187717
[2025-11-28 03:27:01] 2025-11-28 08:26:20,222 | INFO     | sum of deviations: 458130452053.1523
[2025-11-28 03:27:01] 2025-11-28 08:26:20,222 | INFO     | mean x: 1764305233.232779
[2025-11-28 03:27:01] 2025-11-28 08:26:20,222 | INFO     | mean y: 3471646.3657957246
[2025-11-28 03:27:01] 2025-11-28 08:26:20,222 | INFO     | intersect: -34930158540.610695
[2025-11-28 03:27:01] 2025-11-28 08:26:20,223 | INFO     | chi2: 3.4286291147139183
[2025-11-28 03:27:01] 2025-11-28 08:26:20,223 | INFO     | current chi2=3.4286291147139183 (change=49.24744009210523 %)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,223 | INFO     | sum of square deviations: 22323036938.913536
[2025-11-28 03:27:01] 2025-11-28 08:26:20,227 | INFO     | sum of deviations: 528273164805.2311
[2025-11-28 03:27:01] 2025-11-28 08:26:20,227 | INFO     | mean x: 1764305080.7355769
[2025-11-28 03:27:01] 2025-11-28 08:26:20,227 | INFO     | mean y: 3484731.5384615385
[2025-11-28 03:27:01] 2025-11-28 08:26:20,227 | INFO     | intersect: -41748676107.17823
[2025-11-28 03:27:01] 2025-11-28 08:26:20,228 | INFO     | chi2: 2.6556803859262716
[2025-11-28 03:27:01] 2025-11-28 08:26:20,228 | INFO     | current chi2=2.6556803859262716 (change=22.5439586180537 %)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,228 | INFO     | right removable region: 415
[2025-11-28 03:27:01] 2025-11-28 08:26:20,229 | INFO     | sum of square deviations: 23137585799.187737
[2025-11-28 03:27:01] 2025-11-28 08:26:20,232 | INFO     | sum of deviations: 136945087281.0381
[2025-11-28 03:27:01] 2025-11-28 08:26:20,232 | INFO     | mean x: 1764305538.232779
[2025-11-28 03:27:01] 2025-11-28 08:26:20,233 | INFO     | mean y: 3466882.591448931
[2025-11-28 03:27:01] 2025-11-28 08:26:20,233 | INFO     | intersect: -10438978497.003376
[2025-11-28 03:27:01] 2025-11-28 08:26:20,233 | INFO     | chi2: 4.273910196639624
[2025-11-28 03:27:01] 2025-11-28 08:26:20,233 | INFO     | current chi2=4.273910196639624 (change=36.73509847856095 %)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,234 | INFO     | sum of square deviations: 22322917378.91354
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | sum of deviations: 102982559107.53394
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | mean x: 1764305690.7355769
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | mean y: 3473233.7139423075
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | intersect: -8135817522.769521
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | chi2: 4.202087454476873
[2025-11-28 03:27:01] 2025-11-28 08:26:20,238 | INFO     | current chi2=4.202087454476873 (change=1.6804925433206748 %)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,239 | INFO     | left removable region: 20
[2025-11-28 03:27:01] 2025-11-28 08:26:20,239 | INFO     | sum of square deviations: 19110100202.151924
[2025-11-28 03:27:01] 2025-11-28 08:26:20,242 | INFO     | sum of deviations: 303288637360.6326
[2025-11-28 03:27:01] 2025-11-28 08:26:20,243 | INFO     | mean x: 1764305660.2405064
[2025-11-28 03:27:01] 2025-11-28 08:26:20,243 | INFO     | mean y: 3527693.435443038
[2025-11-28 03:27:01] 2025-11-28 08:26:20,243 | INFO     | intersect: -27997050740.04338
[2025-11-28 03:27:01] 2025-11-28 08:26:20,243 | INFO     | chi2: 0.025955703612441795
[2025-11-28 03:27:01] 2025-11-28 08:26:20,243 | INFO     | current memory leak: 15.87 B/s (using 395 data points, chi2=0.03)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | could have reported an average CPU frequency of 2416 MHz (18 samples)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | ..............................
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | . Timing measurements:
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | . get job = 0 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | . initial setup = 2 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,244 | INFO     | . payload setup = 8 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,245 | INFO     | . stage-in = 0 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,245 | INFO     | . payload execution = 25949 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,245 | INFO     | . stage-out = 3 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,245 | INFO     | . log creation = 0 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,245 | INFO     | ..............................
[2025-11-28 03:27:01] 2025-11-28 08:26:20,671 | INFO     | 
[2025-11-28 03:27:01] 2025-11-28 08:26:20,671 | INFO     | job summary report
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | --------------------------------------------------
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | PanDA job id: 6898718847
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | task id: 47556161
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | errors: (none)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | pilot state: finished 
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | transexitcode: 0
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | exeerrorcode: 0
[2025-11-28 03:27:01] 2025-11-28 08:26:20,672 | INFO     | exeerrordiag: 
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | exitcode: 0
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | exitmsg: OK
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | cpuconsumptiontime: 296877 s
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | nevents: 1000
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | neventsw: 0
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | pid: 18068
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | pgrp: 18068
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | corecount: 12
[2025-11-28 03:27:01] 2025-11-28 08:26:20,673 | INFO     | event service: False
[2025-11-28 03:27:01] 2025-11-28 08:26:20,674 | INFO     | sizes: {0: 2284083, 1: 2284338, 6: 2284600, 12: 2284628, 25961: 2321946, 25965: 2330940, 25966: 2331124, 25971: 2331370}
[2025-11-28 03:27:01] 2025-11-28 08:26:20,674 | INFO     | --------------------------------------------------
[2025-11-28 03:27:01] 2025-11-28 08:26:20,674 | INFO     | 
[2025-11-28 03:27:01] 2025-11-28 08:26:20,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 03:27:01] 2025-11-28 08:26:20,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:27:01] 2025-11-28 08:26:20,703 | INFO     | job 6898718847 has completed (purged errors)
[2025-11-28 03:27:01] 2025-11-28 08:26:20,703 | INFO     | overall cleanup function is called
[2025-11-28 03:27:01] 2025-11-28 08:26:21,719 | INFO     | --- collectZombieJob: --- 10, [18068]
[2025-11-28 03:27:01] 2025-11-28 08:26:21,719 | INFO     | zombie collector waiting for pid 18068
[2025-11-28 03:27:01] 2025-11-28 08:26:21,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:27:01] 2025-11-28 08:26:21,720 | INFO     | collected zombie processes
[2025-11-28 03:27:01] 2025-11-28 08:26:21,720 | INFO     | will attempt to kill all subprocesses of pid=18068
[2025-11-28 03:27:01] 2025-11-28 08:26:21,812 | INFO     | process IDs to be killed: [18068] (in reverse order)
[2025-11-28 03:27:01] 2025-11-28 08:26:21,865 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:27:01] 2025-11-28 08:26:21,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:27:01] 2025-11-28 08:26:21,870 | INFO     | did not find any defunct processes belonging to 18068
[2025-11-28 03:27:01] 2025-11-28 08:26:21,873 | INFO     | did not find any defunct processes belonging to 18068
[2025-11-28 03:27:01] 2025-11-28 08:26:21,876 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:27:01] 2025-11-28 08:26:21,876 | INFO     | ready for new job
[2025-11-28 03:27:01] 2025-11-28 08:26:21,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:27:01] 2025-11-28 08:26:21,878 | INFO     | ***************************************
[2025-11-28 03:27:01] 2025-11-28 08:26:21,878 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:27:01] 2025-11-28 08:26:21,878 | INFO     | ***************************************
[2025-11-28 03:27:01] 2025-11-28 08:26:21,878 | INFO     | 
[2025-11-28 03:27:01] 2025-11-28 08:26:21,879 | INFO     | architecture information:
[2025-11-28 03:27:01] 2025-11-28 08:26:21,880 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:27:01] 2025-11-28 08:26:21,895 | INFO     | cat /etc/os-release:
[2025-11-28 03:27:01] NAME="CentOS Linux"
[2025-11-28 03:27:01] VERSION="7 (Core)"
[2025-11-28 03:27:01] ID="centos"
[2025-11-28 03:27:01] ID_LIKE="rhel fedora"
[2025-11-28 03:27:01] VERSION_ID="7"
[2025-11-28 03:27:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:27:01] ANSI_COLOR="0;31"
[2025-11-28 03:27:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:27:01] HOME_URL="https://www.centos.org/"
[2025-11-28 03:27:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:27:01] 
[2025-11-28 03:27:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:27:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:27:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:27:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:27:01] 
[2025-11-28 03:27:01] 2025-11-28 08:26:21,896 | INFO     | ***************************************
[2025-11-28 03:27:01] 2025-11-28 08:26:22,399 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 03:27:01] 2025-11-28 08:26:22,417 | INFO     | sufficient remaining disk space (28243394560 B)
[2025-11-28 03:27:01] 2025-11-28 08:26:22,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:27:01] 2025-11-28 08:26:22,417 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:27:01] 2025-11-28 08:26:22,417 | INFO     | update_server=False
[2025-11-28 03:27:01] 2025-11-28 08:26:22,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:27:01] 2025-11-28 08:26:22,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:27:01] 2025-11-28 08:26:22,452 | INFO     | all payload control threads have been joined
[2025-11-28 03:27:01] 2025-11-28 08:26:22,819 | INFO     | all data control threads have been joined
[2025-11-28 03:27:01] 2025-11-28 08:26:23,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:27:01] 2025-11-28 08:26:23,071 | INFO     | aborting loop
[2025-11-28 03:27:01] 2025-11-28 08:26:23,423 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:23,458 | INFO     | [payload] control thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:23,474 | INFO     | all job control threads have been joined
[2025-11-28 03:27:01] 2025-11-28 08:26:23,820 | INFO     | [data] control thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:23,998 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,077 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,162 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,424 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,439 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,450 | INFO     | [job] validate thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,479 | INFO     | [job] control thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,604 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,793 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:24,884 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:25,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:27:01] 2025-11-28 08:26:25,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:27:01] 2025-11-28 08:26:26,335 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:29,605 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:32,634 | INFO     | job.realtimelogging is not enabled
[2025-11-28 03:27:01] 2025-11-28 08:26:33,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:27:01] 2025-11-28 08:26:52,994 | INFO     | PID=11694 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:27:01] 2025-11-28 08:26:52,994 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:27:01] 2025-11-28 08:26:52,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:27:01] 2025-11-28 08:26:52,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:27:01] 2025-11-28 08:26:55,151 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:27:01] 2025-11-28 08:26:55,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671586318144)>', '<ExcThread(monitor, started 140670614353664)>']
[2025-11-28 03:27:01] 2025-11-28 08:26:56,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:27:01] 2025-11-28 08:26:56,010 | INFO     | [monitor] control thread has ended
[2025-11-28 03:27:01] 2025-11-28 08:27:00,689 | INFO     | all workflow threads have been joined
[2025-11-28 03:27:01] 2025-11-28 08:27:00,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:27:01] 2025-11-28 08:27:00,689 | INFO     | traces error code: 0
[2025-11-28 03:27:01] 2025-11-28 08:27:00,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:27:01] 2025-11-28 08:27:00,789 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:27:01] 2025-11-28 08:27:00,792 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:27:01] 2025-11-28 08:27:00,796 [wrapper] pilotpid: 11694
[2025-11-28 03:27:01] 2025-11-28 08:27:00,800 [wrapper] Pilot exit status: 0
[2025-11-28 03:27:01] 2025-11-28 08:27:00,814 [wrapper] pandaids: 6898718847 6898718847
[2025-11-28 03:27:01] 2025-11-28 08:27:00,852 [wrapper] cleanup supervisor_pilot  6873 11695
[2025-11-28 03:27:01] 2025-11-28 08:27:00,856 [wrapper] Test setup, not cleaning
[2025-11-28 03:27:01] 2025-11-28 08:27:00,860 [wrapper] apfmon messages muted
[2025-11-28 03:27:01] 2025-11-28 08:27:00,864 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:27:01] 2025-11-28 08:27:00,867 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:27:01]  *** Error codes and diagnostics ***
[2025-11-28 03:27:01]     "exeErrorCode": 0,
[2025-11-28 03:27:01]     "exeErrorDiag": "",
[2025-11-28 03:27:01]     "pilotErrorCode": 0,
[2025-11-28 03:27:01]     "pilotErrorDiag": "",
[2025-11-28 03:27:01]  *** Listing of results directory ***
[2025-11-28 03:27:01] total 1716816
[2025-11-28 03:27:01] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 03:27:01] -rwx------ 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas       100 Nov 27 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:27:01] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 13:48 run_atlas
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas       105 Nov 27 13:48 job.xml
[2025-11-28 03:27:01] -rw-r--r-- 3 boincer umatlas 409415313 Nov 27 13:48 EVNT.47483658._002685.pool.root.1
[2025-11-28 03:27:01] -rw-r--r-- 3 boincer umatlas 409415313 Nov 27 13:48 ATLAS.root_0
[2025-11-28 03:27:01] drwxrwx--x 2 boincer umatlas      4096 Nov 27 13:48 shared
[2025-11-28 03:27:01] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 13:48 input.tar.gz
[2025-11-28 03:27:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 13:48 start_atlas.sh
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas         0 Nov 27 13:48 boinc_lockfile
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 20:12 pandaJob.out
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas        57 Nov 27 20:12 setup.sh.local
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas    991826 Nov 27 20:13 agis_schedconf.cvmfs.json
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas       533 Nov 28 03:15 boinc_task_state.xml
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas      5955 Nov 28 03:18 init_data.xml
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas 923618732 Nov 28 03:25 HITS.47556161._006671.pool.root.1
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas      1061 Nov 28 03:26 memory_monitor_summary.json
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas   1516240 Nov 28 03:26 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas   2180444 Nov 28 03:26 log.47556161._006671.job.log.tgz.1
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas        96 Nov 28 03:26 pilot_heartbeat.json
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas      8662 Nov 28 03:26 heartbeat.json
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 03:26 boinc_mmap_file
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas        29 Nov 28 03:26 wrapper_checkpoint.txt
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas      4818 Nov 28 03:27 pilotlog.txt
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas   3643501 Nov 28 03:27 log.47556161._006671.job.log.1
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas       353 Nov 28 03:27 output.list
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas       620 Nov 28 03:27 runtime_log
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas   5847040 Nov 28 03:27 result.tar.gz
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas      9430 Nov 28 03:27 runtime_log.err
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas       795 Nov 28 03:27 1zFNDmMgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmS7JKDmleh57n.diag
[2025-11-28 03:27:01] -rw-r--r-- 1 boincer umatlas     23484 Nov 28 03:27 stderr.txt
[2025-11-28 03:27:01] HITS file was successfully produced:
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas 923618732 Nov 28 03:25 shared/HITS.pool.root.1
[2025-11-28 03:27:01]  *** Contents of shared directory: ***
[2025-11-28 03:27:01] total 1308104
[2025-11-28 03:27:01] -rw-r--r-- 3 boincer umatlas 409415313 Nov 27 13:48 ATLAS.root_0
[2025-11-28 03:27:01] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 13:48 input.tar.gz
[2025-11-28 03:27:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 13:48 start_atlas.sh
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas 923618732 Nov 28 03:25 HITS.pool.root.1
[2025-11-28 03:27:01] -rw------- 1 boincer umatlas   5847040 Nov 28 03:27 result.tar.gz
03:27:02 (7909): run_atlas exited; CPU time 289996.260038
03:27:02 (7909): called boinc_finish(0)

</stderr_txt>
]]>

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