Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:41:55 (11992): wrapper (7.7.26015): starting
13:41:55 (11992): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 13:41:55] Arguments: --nthreads 8
[2025-11-27 13:41:55] Threads: 8
[2025-11-27 13:41:55] Checking for CVMFS
[2025-11-27 13:41:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:41:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:41:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:41:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:41:55] 2.11.2.0 12825 119473 138036 153379 0 81 11208272 18432001 1885 130560 0 84046871 99.975 4740714 23034 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 13:41:55] CVMFS is ok
[2025-11-27 13:41:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:41:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:41:55] Further information can be found at the LHC@home message board.
[2025-11-27 13:41:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:41:55] Checking for apptainer binary...
[2025-11-27 13:41:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:41:55] Running /usr/bin/apptainer --version
[2025-11-27 13:41:55] apptainer version 1.3.2-1.el7
[2025-11-27 13:41:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:41:56] c-206-8.aglt2.org
[2025-11-27 13:41:56] apptainer works
[2025-11-27 13:41:56] Set ATHENA_PROC_NUMBER=8
[2025-11-27 13:41:56] Set ATHENA_CORE_NUMBER=8
[2025-11-27 13:41:56] Starting ATLAS job with PandaID=6898643132
[2025-11-27 13:41:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:41:07]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:41:07] 2025-11-28 13:39:59,702 | INFO     | PID=15814 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 08:41:07] 2025-11-28 13:39:59,702 | INFO     | .. there are 3 such processes running
[2025-11-28 08:41:07] 2025-11-28 13:40:00,071 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 08:41:07] 2025-11-28 13:40:00,078 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2416.9166666666665
[2025-11-28 08:41:07] 2025-11-28 13:40:00,082 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898643132/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,083 | INFO     | extracted standard info from prmon json
[2025-11-28 08:41:07] 2025-11-28 13:40:00,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:41:07] 2025-11-28 13:40:00,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:41:07] 2025-11-28 13:40:00,113 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:41:07] 2025-11-28 13:40:00,114 | INFO     | sum of square deviations: 434480135385.15796
[2025-11-28 08:41:07] 2025-11-28 13:40:00,157 | INFO     | sum of deviations: 2009362478125.3328
[2025-11-28 08:41:07] 2025-11-28 13:40:00,158 | INFO     | mean x: 1764303054.6541555
[2025-11-28 08:41:07] 2025-11-28 13:40:00,158 | INFO     | mean y: 2882808.9285075963
[2025-11-28 08:41:07] 2025-11-28 13:40:00,158 | INFO     | intersect: -8156579659.755558
[2025-11-28 08:41:07] 2025-11-28 13:40:00,160 | INFO     | chi2: 5.4709965627790496
[2025-11-28 08:41:07] 2025-11-28 13:40:00,161 | INFO     | sum of square deviations: 428682231325.5088
[2025-11-28 08:41:07] 2025-11-28 13:40:00,204 | INFO     | sum of deviations: 2334559296672.549
[2025-11-28 08:41:07] 2025-11-28 13:40:00,205 | INFO     | mean x: 1764302902.1570916
[2025-11-28 08:41:07] 2025-11-28 13:40:00,205 | INFO     | mean y: 2891358.6768402155
[2025-11-28 08:41:07] 2025-11-28 13:40:00,205 | INFO     | intersect: -9605320602.060202
[2025-11-28 08:41:07] 2025-11-28 13:40:00,207 | INFO     | chi2: 2.995923274342019
[2025-11-28 08:41:07] 2025-11-28 13:40:00,207 | INFO     | current chi2=2.995923274342019 (change=45.23989843597692 %)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,208 | INFO     | sum of square deviations: 422936142190.8409
[2025-11-28 08:41:07] 2025-11-28 13:40:00,251 | INFO     | sum of deviations: 2488115182824.542
[2025-11-28 08:41:07] 2025-11-28 13:40:00,251 | INFO     | mean x: 1764302749.6600542
[2025-11-28 08:41:07] 2025-11-28 13:40:00,251 | INFO     | mean y: 2895433.2560865646
[2025-11-28 08:41:07] 2025-11-28 13:40:00,252 | INFO     | intersect: -10376421963.901875
[2025-11-28 08:41:07] 2025-11-28 13:40:00,253 | INFO     | chi2: 2.361027195746189
[2025-11-28 08:41:07] 2025-11-28 13:40:00,254 | INFO     | current chi2=2.361027195746189 (change=21.19200061073892 %)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,254 | INFO     | right removable region: 1108
[2025-11-28 08:41:07] 2025-11-28 13:40:00,255 | INFO     | sum of square deviations: 428681784805.50916
[2025-11-28 08:41:07] 2025-11-28 13:40:00,297 | INFO     | sum of deviations: 1717696386156.3542
[2025-11-28 08:41:07] 2025-11-28 13:40:00,298 | INFO     | mean x: 1764303207.1570916
[2025-11-28 08:41:07] 2025-11-28 13:40:00,298 | INFO     | mean y: 2890471.157989228
[2025-11-28 08:41:07] 2025-11-28 13:40:00,298 | INFO     | intersect: -7066542731.824363
[2025-11-28 08:41:07] 2025-11-28 13:40:00,300 | INFO     | chi2: 3.432054261920233
[2025-11-28 08:41:07] 2025-11-28 13:40:00,300 | INFO     | current chi2=3.432054261920233 (change=37.268206577397564 %)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,302 | INFO     | sum of square deviations: 422935453013.7926
[2025-11-28 08:41:07] 2025-11-28 13:40:00,344 | INFO     | sum of deviations: 1643272063152.9368
[2025-11-28 08:41:07] 2025-11-28 13:40:00,348 | INFO     | mean x: 1764303359.6573489
[2025-11-28 08:41:07] 2025-11-28 13:40:00,348 | INFO     | mean y: 2892445.8972046888
[2025-11-28 08:41:07] 2025-11-28 13:40:00,348 | INFO     | intersect: -6852126212.841818
[2025-11-28 08:41:07] 2025-11-28 13:40:00,350 | INFO     | chi2: 3.3766618950548812
[2025-11-28 08:41:07] 2025-11-28 13:40:00,350 | INFO     | current chi2=3.3766618950548812 (change=1.6139711857107921 %)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,350 | INFO     | left removable region: 20
[2025-11-28 08:41:07] 2025-11-28 13:40:00,352 | INFO     | sum of square deviations: 399362158801.52905
[2025-11-28 08:41:07] 2025-11-28 13:40:00,390 | INFO     | sum of deviations: 2033891296320.4438
[2025-11-28 08:41:07] 2025-11-28 13:40:00,390 | INFO     | mean x: 1764303329.1617646
[2025-11-28 08:41:07] 2025-11-28 13:40:00,390 | INFO     | mean y: 2908104.5827205884
[2025-11-28 08:41:07] 2025-11-28 13:40:00,391 | INFO     | intersect: -8982422894.27795
[2025-11-28 08:41:07] 2025-11-28 13:40:00,392 | INFO     | chi2: 0.2213119041841992
[2025-11-28 08:41:07] 2025-11-28 13:40:00,393 | INFO     | current memory leak: 5.09 B/s (using 1088 data points, chi2=0.22)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,394 | INFO     | could have reported an average CPU frequency of 2620 MHz (41 samples)
[2025-11-28 08:41:07] 2025-11-28 13:40:00,394 | INFO     | ..............................
[2025-11-28 08:41:07] 2025-11-28 13:40:00,394 | INFO     | . Timing measurements:
[2025-11-28 08:41:07] 2025-11-28 13:40:00,394 | INFO     | . get job = 0 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . initial setup = 2 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . payload setup = 5 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . stage-in = 0 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . payload execution = 68236 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . stage-out = 4 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,395 | INFO     | . log creation = 0 s
[2025-11-28 08:41:07] 2025-11-28 13:40:00,396 | INFO     | ..............................
[2025-11-28 08:41:07] 2025-11-28 13:40:00,703 | INFO     | time since job start (68272s) is within the limit (172800.0s)
[2025-11-28 08:41:07] 2025-11-28 13:40:01,019 | INFO     | 
[2025-11-28 08:41:07] 2025-11-28 13:40:01,019 | INFO     | job summary report
[2025-11-28 08:41:07] 2025-11-28 13:40:01,019 | INFO     | --------------------------------------------------
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | PanDA job id: 6898643132
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | task id: 47556185
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | errors: (none)
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | pilot state: finished 
[2025-11-28 08:41:07] 2025-11-28 13:40:01,020 | INFO     | transexitcode: 0
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | exeerrorcode: 0
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | exeerrordiag: 
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | exitcode: 0
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | exitmsg: OK
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | cpuconsumptiontime: 528761 s
[2025-11-28 08:41:07] 2025-11-28 13:40:01,021 | INFO     | nevents: 1000
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | neventsw: 0
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | pid: 22247
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | pgrp: 22247
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | corecount: 8
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | event service: False
[2025-11-28 08:41:07] 2025-11-28 13:40:01,022 | INFO     | sizes: {0: 2284314, 1: 2284314, 4: 2284604, 12: 2284632, 68245: 2340469, 68246: 2340468, 68250: 2349646, 68252: 2349702, 68257: 2350044}
[2025-11-28 08:41:07] 2025-11-28 13:40:01,023 | INFO     | --------------------------------------------------
[2025-11-28 08:41:07] 2025-11-28 13:40:01,023 | INFO     | 
[2025-11-28 08:41:07] 2025-11-28 13:40:01,023 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 08:41:07] 2025-11-28 13:40:01,041 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,043 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,043 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,044 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,044 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,044 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,044 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:41:07] 2025-11-28 13:40:01,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:41:07] 2025-11-28 13:40:01,046 | INFO     | job 6898643132 has completed (purged errors)
[2025-11-28 08:41:07] 2025-11-28 13:40:01,046 | INFO     | overall cleanup function is called
[2025-11-28 08:41:07] 2025-11-28 13:40:02,064 | INFO     | --- collectZombieJob: --- 10, [22247]
[2025-11-28 08:41:07] 2025-11-28 13:40:02,064 | INFO     | zombie collector waiting for pid 22247
[2025-11-28 08:41:07] 2025-11-28 13:40:02,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:41:07] 2025-11-28 13:40:02,064 | INFO     | collected zombie processes
[2025-11-28 08:41:07] 2025-11-28 13:40:02,064 | INFO     | will attempt to kill all subprocesses of pid=22247
[2025-11-28 08:41:07] 2025-11-28 13:40:02,223 | INFO     | process IDs to be killed: [22247] (in reverse order)
[2025-11-28 08:41:07] 2025-11-28 13:40:02,279 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:41:07] 2025-11-28 13:40:02,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:41:07] 2025-11-28 13:40:02,285 | INFO     | did not find any defunct processes belonging to 22247
[2025-11-28 08:41:07] 2025-11-28 13:40:02,290 | INFO     | did not find any defunct processes belonging to 22247
[2025-11-28 08:41:07] 2025-11-28 13:40:02,292 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:41:07] 2025-11-28 13:40:02,292 | INFO     | ready for new job
[2025-11-28 08:41:07] 2025-11-28 13:40:02,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:41:07] 2025-11-28 13:40:02,297 | INFO     | ***************************************
[2025-11-28 08:41:07] 2025-11-28 13:40:02,298 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:41:07] 2025-11-28 13:40:02,298 | INFO     | ***************************************
[2025-11-28 08:41:07] 2025-11-28 13:40:02,298 | INFO     | 
[2025-11-28 08:41:07] 2025-11-28 13:40:02,299 | INFO     | architecture information:
[2025-11-28 08:41:07] 2025-11-28 13:40:02,300 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:41:07] 2025-11-28 13:40:02,311 | INFO     | cat /etc/os-release:
[2025-11-28 08:41:07] NAME="CentOS Linux"
[2025-11-28 08:41:07] VERSION="7 (Core)"
[2025-11-28 08:41:07] ID="centos"
[2025-11-28 08:41:07] ID_LIKE="rhel fedora"
[2025-11-28 08:41:07] VERSION_ID="7"
[2025-11-28 08:41:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:41:07] ANSI_COLOR="0;31"
[2025-11-28 08:41:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:41:07] HOME_URL="https://www.centos.org/"
[2025-11-28 08:41:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:41:07] 
[2025-11-28 08:41:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:41:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:41:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:41:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:41:07] 
[2025-11-28 08:41:07] 2025-11-28 13:40:02,312 | INFO     | ***************************************
[2025-11-28 08:41:07] 2025-11-28 13:40:02,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 08:41:07] 2025-11-28 13:40:02,830 | INFO     | sufficient remaining disk space (25145901056 B)
[2025-11-28 08:41:07] 2025-11-28 13:40:02,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:41:07] 2025-11-28 13:40:02,830 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:41:07] 2025-11-28 13:40:02,831 | INFO     | update_server=False
[2025-11-28 08:41:07] 2025-11-28 13:40:02,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:41:07] 2025-11-28 13:40:02,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:41:07] 2025-11-28 13:40:02,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:41:07] 2025-11-28 13:40:02,832 | INFO     | aborting loop
[2025-11-28 08:41:07] 2025-11-28 13:40:02,857 | INFO     | all job control threads have been joined
[2025-11-28 08:41:07] 2025-11-28 13:40:03,787 | INFO     | all data control threads have been joined
[2025-11-28 08:41:07] 2025-11-28 13:40:03,837 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:03,838 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:03,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:03,862 | INFO     | [job] control thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:03,893 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:03,928 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,009 | INFO     | all payload control threads have been joined
[2025-11-28 08:41:07] 2025-11-28 13:40:04,127 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:41:07] 2025-11-28 13:40:04,362 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,645 | INFO     | [job] validate thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,661 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,791 | INFO     | [data] control thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:04,928 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:05,014 | INFO     | [payload] control thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:05,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:41:07] 2025-11-28 13:40:06,243 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:06,573 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:06,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:41:07] 2025-11-28 13:40:33,956 | INFO     | PID=15814 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 08:41:07] 2025-11-28 13:40:33,956 | INFO     | .. there are 3 such processes running
[2025-11-28 08:41:07] 2025-11-28 13:40:33,957 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:41:07] 2025-11-28 13:40:33,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:41:07] 2025-11-28 13:40:33,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:41:07] 2025-11-28 13:41:01,504 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:41:07] 2025-11-28 13:41:02,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804964386624)>', '<ExcThread(monitor, started 139804373137152)>']
[2025-11-28 08:41:07] 2025-11-28 13:41:02,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:41:07] 2025-11-28 13:41:02,104 | INFO     | [monitor] control thread has ended
[2025-11-28 08:41:07] 2025-11-28 13:41:07,043 | INFO     | all workflow threads have been joined
[2025-11-28 08:41:07] 2025-11-28 13:41:07,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:41:07] 2025-11-28 13:41:07,043 | INFO     | traces error code: 0
[2025-11-28 08:41:07] 2025-11-28 13:41:07,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:41:07] 2025-11-28 13:41:07,179 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:41:07] 2025-11-28 13:41:07,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:41:07] 2025-11-28 13:41:07,183 [wrapper] pilotpid: 15814
[2025-11-28 08:41:07] 2025-11-28 13:41:07,186 [wrapper] Pilot exit status: 0
[2025-11-28 08:41:07] 2025-11-28 13:41:07,194 [wrapper] pandaids: 6898643132
[2025-11-28 08:41:07] 2025-11-28 13:41:07,224 [wrapper] cleanup supervisor_pilot 14322 15815
[2025-11-28 08:41:07] 2025-11-28 13:41:07,227 [wrapper] Test setup, not cleaning
[2025-11-28 08:41:07] 2025-11-28 13:41:07,233 [wrapper] apfmon messages muted
[2025-11-28 08:41:07] 2025-11-28 13:41:07,235 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:41:07] 2025-11-28 13:41:07,237 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:41:07]  *** Error codes and diagnostics ***
[2025-11-28 08:41:07]     "exeErrorCode": 0,
[2025-11-28 08:41:07]     "exeErrorDiag": "",
[2025-11-28 08:41:07]     "pilotErrorCode": 0,
[2025-11-28 08:41:07]     "pilotErrorDiag": "",
[2025-11-28 08:41:07]  *** Listing of results directory ***
[2025-11-28 08:41:07] total 1317472
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 08:41:07] -rwx------ 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas       100 Nov 27 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:41:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 13:41 run_atlas
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas       105 Nov 27 13:41 job.xml
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas 411000300 Nov 27 13:41 EVNT.47483658._004290.pool.root.1
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 13:41 start_atlas.sh
[2025-11-28 08:41:07] drwxrwx--x 2 boincer umatlas      4096 Nov 27 13:41 shared
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 13:41 input.tar.gz
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas         0 Nov 27 13:41 boinc_lockfile
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 13:41 pandaJob.out
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas        57 Nov 27 13:41 setup.sh.local
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas    991223 Nov 27 13:42 agis_schedconf.cvmfs.json
[2025-11-28 08:41:07] drwx------ 5 boincer umatlas      4096 Nov 27 13:42 pilot3
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas       533 Nov 28 08:26 boinc_task_state.xml
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas 910680677 Nov 28 08:39 HITS.47556185._000538.pool.root.1
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas      1066 Nov 28 08:39 memory_monitor_summary.json
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas   1516240 Nov 28 08:39 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas   2295646 Nov 28 08:39 log.47556185._000538.job.log.tgz.1
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas      8664 Nov 28 08:40 heartbeat.json
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas        95 Nov 28 08:40 pilot_heartbeat.json
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 08:40 init_data.xml
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas        29 Nov 28 08:40 wrapper_checkpoint.txt
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 08:41 boinc_mmap_file
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas      4821 Nov 28 08:41 pilotlog.txt
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas   9445503 Nov 28 08:41 log.47556185._000538.job.log.1
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas       353 Nov 28 08:41 output.list
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas       620 Nov 28 08:41 runtime_log
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas  11765760 Nov 28 08:41 result.tar.gz
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 08:41 runtime_log.err
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas       667 Nov 28 08:41 OXiKDmSgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrGNKDmdaQCGo.diag
[2025-11-28 08:41:07] -rw-r--r-- 1 boincer umatlas     21390 Nov 28 08:41 stderr.txt
[2025-11-28 08:41:07] HITS file was successfully produced:
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas 910680677 Nov 28 08:39 shared/HITS.pool.root.1
[2025-11-28 08:41:07]  *** Contents of shared directory: ***
[2025-11-28 08:41:07] total 1302804
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas 411000300 Nov 27 13:41 ATLAS.root_0
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 13:41 start_atlas.sh
[2025-11-28 08:41:07] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 13:41 input.tar.gz
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas 910680677 Nov 28 08:39 HITS.pool.root.1
[2025-11-28 08:41:07] -rw------- 1 boincer umatlas  11765760 Nov 28 08:41 result.tar.gz
08:41:08 (11992): run_atlas exited; CPU time 527766.088790
08:41:08 (11992): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN