Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:58:25 (5261): wrapper (7.7.26015): starting
12:58:25 (5261): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 12:58:25] Arguments: --nthreads 12
[2025-11-27 12:58:25] Threads: 12
[2025-11-27 12:58:25] Checking for CVMFS
[2025-11-27 12:58:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 12:58:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 12:58:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 12:58:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 12:58:25] 2.11.2.0 2981 289406 90160 153378 2 71 20002220 20275201 1 130560 1 131581069 99.969 16887599 14240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 12:58:25] CVMFS is ok
[2025-11-27 12:58:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 12:58:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 12:58:25] Further information can be found at the LHC@home message board.
[2025-11-27 12:58:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 12:58:25] Checking for apptainer binary...
[2025-11-27 12:58:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 12:58:25] Running /usr/bin/apptainer --version
[2025-11-27 12:58:25] apptainer version 1.3.2-1.el7
[2025-11-27 12:58:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 12:58:27] c-205-30.aglt2.org
[2025-11-27 12:58:27] apptainer works
[2025-11-27 12:58:27] Set ATHENA_PROC_NUMBER=12
[2025-11-27 12:58:27] Set ATHENA_CORE_NUMBER=12
[2025-11-27 12:58:27] Starting ATLAS job with PandaID=6898378264
[2025-11-27 12:58:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:12:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:12:29] 2025-11-28 01:11:28,738 | INFO     | monitor loop #1947: job 0:6898378264 is in state 'finished'
[2025-11-27 20:12:29] 2025-11-28 01:11:28,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,878 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 20:12:29] 2025-11-28 01:11:28,881 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-27 20:12:29] 2025-11-28 01:11:28,883 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378264/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,884 | INFO     | extracted standard info from prmon json
[2025-11-27 20:12:29] 2025-11-28 01:11:28,884 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:12:29] 2025-11-28 01:11:28,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:12:29] 2025-11-28 01:11:28,890 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:12:29] 2025-11-28 01:11:28,891 | INFO     | sum of square deviations: 23803654060.94124
[2025-11-27 20:12:29] 2025-11-28 01:11:28,895 | INFO     | sum of deviations: 368597305836.4471
[2025-11-27 20:12:29] 2025-11-28 01:11:28,895 | INFO     | mean x: 1764279282.1882353
[2025-11-27 20:12:29] 2025-11-28 01:11:28,895 | INFO     | mean y: 3424021.3694117647
[2025-11-27 20:12:29] 2025-11-28 01:11:28,895 | INFO     | intersect: -27316271874.59464
[2025-11-27 20:12:29] 2025-11-28 01:11:28,896 | INFO     | chi2: 5.527193314155587
[2025-11-27 20:12:29] 2025-11-28 01:11:28,896 | INFO     | sum of square deviations: 22973393125.76188
[2025-11-27 20:12:29] 2025-11-28 01:11:28,900 | INFO     | sum of deviations: 514210151617.95294
[2025-11-27 20:12:29] 2025-11-28 01:11:28,900 | INFO     | mean x: 1764279129.6904762
[2025-11-27 20:12:29] 2025-11-28 01:11:28,900 | INFO     | mean y: 3450738.238095238
[2025-11-27 20:12:29] 2025-11-28 01:11:28,900 | INFO     | intersect: -39486155076.98662
[2025-11-27 20:12:29] 2025-11-28 01:11:28,901 | INFO     | chi2: 3.0530079058547246
[2025-11-27 20:12:29] 2025-11-28 01:11:28,901 | INFO     | current chi2=3.0530079058547246 (change=44.76386599260559 %)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,901 | INFO     | sum of square deviations: 22162667440.57828
[2025-11-27 20:12:29] 2025-11-28 01:11:28,905 | INFO     | sum of deviations: 580292124980.1443
[2025-11-27 20:12:29] 2025-11-28 01:11:28,905 | INFO     | mean x: 1764278977.1927712
[2025-11-27 20:12:29] 2025-11-28 01:11:28,905 | INFO     | mean y: 3463121.448192771
[2025-11-27 20:12:29] 2025-11-28 01:11:28,905 | INFO     | intersect: -46191210849.000336
[2025-11-27 20:12:29] 2025-11-28 01:11:28,906 | INFO     | chi2: 2.3015984546219395
[2025-11-27 20:12:29] 2025-11-28 01:11:28,906 | INFO     | current chi2=2.3015984546219395 (change=24.612103027699806 %)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,906 | INFO     | right removable region: 414
[2025-11-27 20:12:29] 2025-11-28 01:11:28,907 | INFO     | sum of square deviations: 22973344325.761887
[2025-11-27 20:12:29] 2025-11-28 01:11:28,910 | INFO     | sum of deviations: 239097252925.6902
[2025-11-27 20:12:29] 2025-11-28 01:11:28,910 | INFO     | mean x: 1764279434.6904762
[2025-11-27 20:12:29] 2025-11-28 01:11:28,911 | INFO     | mean y: 3447720.2976190476
[2025-11-27 20:12:29] 2025-11-28 01:11:28,911 | INFO     | intersect: -18358457287.79235
[2025-11-27 20:12:29] 2025-11-28 01:11:28,911 | INFO     | chi2: 3.3815639820865604
[2025-11-27 20:12:29] 2025-11-28 01:11:28,911 | INFO     | current chi2=3.3815639820865604 (change=38.819509470998554 %)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,912 | INFO     | sum of square deviations: 22162569840.578285
[2025-11-27 20:12:29] 2025-11-28 01:11:28,915 | INFO     | sum of deviations: 208950945816.8317
[2025-11-27 20:12:29] 2025-11-28 01:11:28,916 | INFO     | mean x: 1764279587.1927712
[2025-11-27 20:12:29] 2025-11-28 01:11:28,916 | INFO     | mean y: 3453383.6771084336
[2025-11-27 20:12:29] 2025-11-28 01:11:28,916 | INFO     | intersect: -16630352672.256334
[2025-11-27 20:12:29] 2025-11-28 01:11:28,916 | INFO     | chi2: 3.3386966785179464
[2025-11-27 20:12:29] 2025-11-28 01:11:28,917 | INFO     | current chi2=3.3386966785179464 (change=1.267676844078614 %)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,917 | INFO     | left removable region: 20
[2025-11-27 20:12:29] 2025-11-28 01:11:28,917 | INFO     | sum of square deviations: 18965550353.058456
[2025-11-27 20:12:29] 2025-11-28 01:11:28,921 | INFO     | sum of deviations: 377986923722.485
[2025-11-27 20:12:29] 2025-11-28 01:11:28,921 | INFO     | mean x: 1764279556.6979694
[2025-11-27 20:12:29] 2025-11-28 01:11:28,921 | INFO     | mean y: 3502681.230964467
[2025-11-27 20:12:29] 2025-11-28 01:11:28,921 | INFO     | intersect: -35158914955.39682
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | chi2: 0.06903895294466994
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | current memory leak: 19.93 B/s (using 394 data points, chi2=0.07)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | could have reported an average CPU frequency of 2393 MHz (18 samples)
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | ..............................
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | . Timing measurements:
[2025-11-27 20:12:29] 2025-11-28 01:11:28,922 | INFO     | . get job = 0 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . initial setup = 2 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . payload setup = 7 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . stage-in = 0 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . payload execution = 25927 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . stage-out = 3 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | . log creation = 0 s
[2025-11-27 20:12:29] 2025-11-28 01:11:28,923 | INFO     | ..............................
[2025-11-27 20:12:29] 2025-11-28 01:11:29,004 | INFO     | 
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | job summary report
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | --------------------------------------------------
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | PanDA job id: 6898378264
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | task id: 47556173
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | errors: (none)
[2025-11-27 20:12:29] 2025-11-28 01:11:29,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | pilot state: finished 
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | transexitcode: 0
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | exeerrorcode: 0
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | exeerrordiag: 
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | exitcode: 0
[2025-11-27 20:12:29] 2025-11-28 01:11:29,006 | INFO     | exitmsg: OK
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | cpuconsumptiontime: 296652 s
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | nevents: 1000
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | neventsw: 0
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | pid: 15366
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | pgrp: 15366
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | corecount: 12
[2025-11-27 20:12:29] 2025-11-28 01:11:29,007 | INFO     | event service: False
[2025-11-27 20:12:29] 2025-11-28 01:11:29,008 | INFO     | sizes: {0: 2284145, 1: 2284344, 5: 2284606, 11: 2284662, 25938: 2321983, 25942: 2330977, 25943: 2331161, 25951: 2331407}
[2025-11-27 20:12:29] 2025-11-28 01:11:29,008 | INFO     | --------------------------------------------------
[2025-11-27 20:12:29] 2025-11-28 01:11:29,008 | INFO     | 
[2025-11-27 20:12:29] 2025-11-28 01:11:29,008 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:12:29] 2025-11-28 01:11:29,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:12:29] 2025-11-28 01:11:29,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:12:29] 2025-11-28 01:11:29,036 | INFO     | job 6898378264 has completed (purged errors)
[2025-11-27 20:12:29] 2025-11-28 01:11:29,037 | INFO     | overall cleanup function is called
[2025-11-27 20:12:29] 2025-11-28 01:11:30,053 | INFO     | --- collectZombieJob: --- 10, [15366]
[2025-11-27 20:12:29] 2025-11-28 01:11:30,053 | INFO     | zombie collector waiting for pid 15366
[2025-11-27 20:12:29] 2025-11-28 01:11:30,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:12:29] 2025-11-28 01:11:30,061 | INFO     | collected zombie processes
[2025-11-27 20:12:29] 2025-11-28 01:11:30,061 | INFO     | will attempt to kill all subprocesses of pid=15366
[2025-11-27 20:12:29] 2025-11-28 01:11:30,153 | INFO     | process IDs to be killed: [15366] (in reverse order)
[2025-11-27 20:12:29] 2025-11-28 01:11:30,203 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:12:29] 2025-11-28 01:11:30,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:12:29] 2025-11-28 01:11:30,207 | INFO     | did not find any defunct processes belonging to 15366
[2025-11-27 20:12:29] 2025-11-28 01:11:30,210 | INFO     | did not find any defunct processes belonging to 15366
[2025-11-27 20:12:29] 2025-11-28 01:11:30,212 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:12:29] 2025-11-28 01:11:30,212 | INFO     | ready for new job
[2025-11-27 20:12:29] 2025-11-28 01:11:30,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:12:29] 2025-11-28 01:11:30,214 | INFO     | ***************************************
[2025-11-27 20:12:29] 2025-11-28 01:11:30,215 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:12:29] 2025-11-28 01:11:30,215 | INFO     | ***************************************
[2025-11-27 20:12:29] 2025-11-28 01:11:30,215 | INFO     | 
[2025-11-27 20:12:29] 2025-11-28 01:11:30,215 | INFO     | architecture information:
[2025-11-27 20:12:29] 2025-11-28 01:11:30,216 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:12:29] 2025-11-28 01:11:30,230 | INFO     | cat /etc/os-release:
[2025-11-27 20:12:29] NAME="CentOS Linux"
[2025-11-27 20:12:29] VERSION="7 (Core)"
[2025-11-27 20:12:29] ID="centos"
[2025-11-27 20:12:29] ID_LIKE="rhel fedora"
[2025-11-27 20:12:29] VERSION_ID="7"
[2025-11-27 20:12:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:12:29] ANSI_COLOR="0;31"
[2025-11-27 20:12:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:12:29] HOME_URL="https://www.centos.org/"
[2025-11-27 20:12:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:12:29] 
[2025-11-27 20:12:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:12:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:12:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:12:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:12:29] 
[2025-11-27 20:12:29] 2025-11-28 01:11:30,231 | INFO     | ***************************************
[2025-11-27 20:12:29] 2025-11-28 01:11:30,734 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:12:29] 2025-11-28 01:11:30,750 | INFO     | sufficient remaining disk space (28238151680 B)
[2025-11-27 20:12:29] 2025-11-28 01:11:30,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:12:29] 2025-11-28 01:11:30,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:12:29] 2025-11-28 01:11:30,751 | INFO     | update_server=False
[2025-11-27 20:12:29] 2025-11-28 01:11:30,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:12:29] 2025-11-28 01:11:30,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:12:29] 2025-11-28 01:11:30,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:12:29] 2025-11-28 01:11:30,786 | INFO     | all data control threads have been joined
[2025-11-27 20:12:29] 2025-11-28 01:11:30,971 | INFO     | all job control threads have been joined
[2025-11-27 20:12:29] 2025-11-28 01:11:31,241 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 20:12:29] 2025-11-28 01:11:31,241 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 20:12:29] 2025-11-28 01:11:31,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:12:29] 2025-11-28 01:11:31,241 | INFO     | will abort loop
[2025-11-27 20:12:29] 2025-11-28 01:11:31,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:12:29] 2025-11-28 01:11:31,757 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:31,758 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:31,763 | INFO     | [job] validate thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:31,789 | INFO     | [data] control thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:31,934 | INFO     | all payload control threads have been joined
[2025-11-27 20:12:29] 2025-11-28 01:11:31,976 | INFO     | [job] control thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,117 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,245 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,425 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,558 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,623 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,757 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:32,939 | INFO     | [payload] control thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:33,214 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:11:35,744 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:12:29] 2025-11-28 01:12:01,764 | INFO     | PID=8961 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 20:12:29] 2025-11-28 01:12:01,765 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:12:29] 2025-11-28 01:12:01,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:12:29] 2025-11-28 01:12:01,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:12:29] 2025-11-28 01:12:23,573 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:12:29] 2025-11-28 01:12:24,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963096946496)>', '<ExcThread(monitor, started 139961768601344)>']
[2025-11-27 20:12:29] 2025-11-28 01:12:24,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:12:29] 2025-11-28 01:12:24,869 | INFO     | [monitor] control thread has ended
[2025-11-27 20:12:29] 2025-11-28 01:12:29,190 | INFO     | all workflow threads have been joined
[2025-11-27 20:12:29] 2025-11-28 01:12:29,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:12:29] 2025-11-28 01:12:29,203 | INFO     | traces error code: 0
[2025-11-27 20:12:29] 2025-11-28 01:12:29,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:12:29] 2025-11-28 01:12:29,294 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:12:29] 2025-11-28 01:12:29,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:12:29] 2025-11-28 01:12:29,301 [wrapper] pilotpid: 8961
[2025-11-27 20:12:29] 2025-11-28 01:12:29,305 [wrapper] Pilot exit status: 0
[2025-11-27 20:12:29] 2025-11-28 01:12:29,320 [wrapper] pandaids: 6898378264
[2025-11-27 20:12:29] 2025-11-28 01:12:29,362 [wrapper] cleanup supervisor_pilot 28538 8962
[2025-11-27 20:12:29] 2025-11-28 01:12:29,365 [wrapper] Test setup, not cleaning
[2025-11-27 20:12:29] 2025-11-28 01:12:29,369 [wrapper] apfmon messages muted
[2025-11-27 20:12:29] 2025-11-28 01:12:29,373 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:12:29] 2025-11-28 01:12:29,376 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:12:29]  *** Error codes and diagnostics ***
[2025-11-27 20:12:29]     "exeErrorCode": 0,
[2025-11-27 20:12:29]     "exeErrorDiag": "",
[2025-11-27 20:12:29]     "pilotErrorCode": 0,
[2025-11-27 20:12:29]     "pilotErrorDiag": "",
[2025-11-27 20:12:29]  *** Listing of results directory ***
[2025-11-27 20:12:29] total 1322124
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 20:12:29] -rwx------ 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas       100 Nov 27 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:12:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 12:58 run_atlas
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas       105 Nov 27 12:58 job.xml
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas 408771758 Nov 27 12:58 EVNT.47483658._003206.pool.root.1
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 12:58 start_atlas.sh
[2025-11-27 20:12:29] drwxrwx--x 2 boincer umatlas      4096 Nov 27 12:58 shared
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 12:58 input.tar.gz
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas         0 Nov 27 12:58 boinc_lockfile
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 12:58 pandaJob.out
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas        57 Nov 27 12:58 setup.sh.local
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas    991231 Nov 27 12:58 agis_schedconf.cvmfs.json
[2025-11-27 20:12:29] drwx------ 5 boincer umatlas      4096 Nov 27 12:58 pilot3
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas       532 Nov 27 20:00 boinc_task_state.xml
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas      5955 Nov 27 20:10 init_data.xml
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas 929536565 Nov 27 20:10 HITS.47556173._001629.pool.root.1
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas      1064 Nov 27 20:11 memory_monitor_summary.json
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas   1516240 Nov 27 20:11 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas   2177567 Nov 27 20:11 log.47556173._001629.job.log.tgz.1
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas      8668 Nov 27 20:11 heartbeat.json
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas        95 Nov 27 20:12 pilot_heartbeat.json
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 20:12 boinc_mmap_file
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas        29 Nov 27 20:12 wrapper_checkpoint.txt
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas      4931 Nov 27 20:12 pilotlog.txt
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas   3634772 Nov 27 20:12 log.47556173._001629.job.log.1
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas       353 Nov 27 20:12 output.list
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas       620 Nov 27 20:12 runtime_log
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas   5836800 Nov 27 20:12 result.tar.gz
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas       670 Nov 27 20:12 XJqNDmMgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDml7JKDm3xDRin.diag
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 20:12 runtime_log.err
[2025-11-27 20:12:29] -rw-r--r-- 1 boincer umatlas     21323 Nov 27 20:12 stderr.txt
[2025-11-27 20:12:29] HITS file was successfully produced:
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas 929536565 Nov 27 20:10 shared/HITS.pool.root.1
[2025-11-27 20:12:29]  *** Contents of shared directory: ***
[2025-11-27 20:12:29] total 1313248
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas 408771758 Nov 27 12:58 ATLAS.root_0
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 12:58 start_atlas.sh
[2025-11-27 20:12:29] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 12:58 input.tar.gz
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas 929536565 Nov 27 20:10 HITS.pool.root.1
[2025-11-27 20:12:29] -rw------- 1 boincer umatlas   5836800 Nov 27 20:12 result.tar.gz
20:12:30 (5261): run_atlas exited; CPU time 289667.880999
20:12:30 (5261): called boinc_finish(0)

</stderr_txt>
]]>

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