Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:40:45 (3097742): wrapper (7.7.26015): starting
16:40:45 (3097742): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 16:40:45] Arguments: --nthreads 8
[2025-11-27 16:40:45] Threads: 8
[2025-11-27 16:40:45] Checking for CVMFS
[2025-11-27 16:40:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:40:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:40:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:40:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:40:46] 2.13.3.0 12213 32043 244032 153385 1 611 30326741 40960001 49771 16776704 0 301208024 99.729 214017689 35198 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 16:40:46] CVMFS is ok
[2025-11-27 16:40:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:40:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:40:46] Further information can be found at the LHC@home message board.
[2025-11-27 16:40:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:40:46] Checking for apptainer binary...
[2025-11-27 16:40:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:40:46] Running /usr/bin/apptainer --version
[2025-11-27 16:40:46] apptainer version 1.4.4-1.el9
[2025-11-27 16:40:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:40:46] c7-3-35.aglt2.org
[2025-11-27 16:40:46] apptainer works
[2025-11-27 16:40:46] Set ATHENA_PROC_NUMBER=8
[2025-11-27 16:40:46] Set ATHENA_CORE_NUMBER=8
[2025-11-27 16:40:46] Starting ATLAS job with PandaID=6898490941
[2025-11-27 16:40:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:24:57]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:24:57] 2025-11-28 12:24:05,000 | INFO     | time since job start (52970s) is within the limit (172800.0s)
[2025-11-28 07:24:57] 2025-11-28 12:24:06,193 | INFO     | monitor loop #2850: job 0:6898490941 is in state 'finished'
[2025-11-28 07:24:57] 2025-11-28 12:24:06,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:24:57] 2025-11-28 12:24:07,007 | INFO     | time since job start (52972s) is within the limit (172800.0s)
[2025-11-28 07:24:57] 2025-11-28 12:24:08,698 | INFO     | monitor loop #2851: job 0:6898490941 is in state 'finished'
[2025-11-28 07:24:57] 2025-11-28 12:24:08,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:24:57] 2025-11-28 12:24:09,013 | INFO     | time since job start (52974s) is within the limit (172800.0s)
[2025-11-28 07:24:57] 2025-11-28 12:24:11,020 | INFO     | time since job start (52976s) is within the limit (172800.0s)
[2025-11-28 07:24:57] 2025-11-28 12:24:11,203 | INFO     | monitor loop #2852: job 0:6898490941 is in state 'finished'
[2025-11-28 07:24:57] 2025-11-28 12:24:11,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:24:57] 2025-11-28 12:24:13,027 | INFO     | time since job start (52978s) is within the limit (172800.0s)
[2025-11-28 07:24:57] 2025-11-28 12:24:13,708 | INFO     | monitor loop #2853: job 0:6898490941 is in state 'finished'
[2025-11-28 07:24:57] 2025-11-28 12:24:13,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,052 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:24:57] 2025-11-28 12:24:16,115 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3297.8445937500005
[2025-11-28 07:24:57] 2025-11-28 12:24:16,241 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898490941/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,241 | INFO     | extracted standard info from prmon json
[2025-11-28 07:24:57] 2025-11-28 12:24:16,242 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:24:57] 2025-11-28 12:24:16,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:24:57] 2025-11-28 12:24:16,288 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:24:57] 2025-11-28 12:24:16,294 | INFO     | sum of square deviations: 202102164357.55902
[2025-11-28 07:24:57] 2025-11-28 12:24:16,307 | INFO     | sum of deviations: 618728176451.4146
[2025-11-28 07:24:57] 2025-11-28 12:24:16,308 | INFO     | mean x: 1764306141.6136103
[2025-11-28 07:24:57] 2025-11-28 12:24:16,308 | INFO     | mean y: 2865245.3206459056
[2025-11-28 07:24:57] 2025-11-28 12:24:16,308 | INFO     | intersect: -5398491663.313525
[2025-11-28 07:24:57] 2025-11-28 12:24:16,308 | INFO     | chi2: 16.83525128792955
[2025-11-28 07:24:57] 2025-11-28 12:24:16,309 | INFO     | sum of square deviations: 198626423536.9653
[2025-11-28 07:24:57] 2025-11-28 12:24:16,327 | INFO     | sum of deviations: 898106072263.6887
[2025-11-28 07:24:57] 2025-11-28 12:24:16,327 | INFO     | mean x: 1764305989.1229699
[2025-11-28 07:24:57] 2025-11-28 12:24:16,327 | INFO     | mean y: 2877505.465197216
[2025-11-28 07:24:57] 2025-11-28 12:24:16,327 | INFO     | intersect: -7974580347.052817
[2025-11-28 07:24:57] 2025-11-28 12:24:16,328 | INFO     | chi2: 13.768674157268253
[2025-11-28 07:24:57] 2025-11-28 12:24:16,328 | INFO     | current chi2=13.768674157268253 (change=18.215214481888708 %)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,328 | INFO     | right removable region: 861
[2025-11-28 07:24:57] 2025-11-28 12:24:16,329 | INFO     | sum of square deviations: 198625570146.96536
[2025-11-28 07:24:57] 2025-11-28 12:24:16,342 | INFO     | monitor loop #2854: job 0:6898490941 is in state 'finished'
[2025-11-28 07:24:57] 2025-11-28 12:24:16,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,346 | INFO     | sum of deviations: 279859768032.73517
[2025-11-28 07:24:57] 2025-11-28 12:24:16,346 | INFO     | mean x: 1764306294.1229699
[2025-11-28 07:24:57] 2025-11-28 12:24:16,346 | INFO     | mean y: 2880107.634570766
[2025-11-28 07:24:57] 2025-11-28 12:24:16,346 | INFO     | intersect: -2482994947.861111
[2025-11-28 07:24:57] 2025-11-28 12:24:16,347 | INFO     | chi2: 12.897889672689843
[2025-11-28 07:24:57] 2025-11-28 12:24:16,347 | INFO     | current chi2=12.897889672689843 (change=23.3876022870101 %)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,347 | INFO     | left removable region: 10
[2025-11-28 07:24:57] 2025-11-28 12:24:16,348 | INFO     | sum of square deviations: 191118993661.6874
[2025-11-28 07:24:57] 2025-11-28 12:24:16,364 | INFO     | sum of deviations: 462044360736.79724
[2025-11-28 07:24:57] 2025-11-28 12:24:16,365 | INFO     | mean x: 1764306263.6415982
[2025-11-28 07:24:57] 2025-11-28 12:24:16,365 | INFO     | mean y: 2902968.94359577
[2025-11-28 07:24:57] 2025-11-28 12:24:16,365 | INFO     | intersect: -4262438450.6079755
[2025-11-28 07:24:57] 2025-11-28 12:24:16,366 | INFO     | chi2: 7.796318073839186
[2025-11-28 07:24:57] 2025-11-28 12:24:16,366 | INFO     | current memory leak: 2.42 B/s (using 851 data points, chi2=7.80)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,366 | INFO     | could have reported an average CPU frequency of 3240 MHz (32 samples)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | ..............................
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . Timing measurements:
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . get job = 0 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . initial setup = 3 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . payload setup = 16 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . stage-in = 0 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . payload execution = 52896 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . stage-out = 9 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | . log creation = 1 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,367 | INFO     | ..............................
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | 
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | job summary report
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | --------------------------------------------------
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | PanDA job id: 6898490941
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | task id: 47556161
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | errors: (none)
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | pilot state: finished 
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | transexitcode: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:16,884 | INFO     | exeerrorcode: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | exeerrordiag: 
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | exitcode: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | exitmsg: OK
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | cpuconsumptiontime: 191232 s
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | nevents: 1000
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | neventsw: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | pid: 3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | pgrp: 3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | corecount: 8
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | event service: False
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | sizes: {0: 2284083, 1: 2284338, 11: 2284600, 12: 2284628, 52917: 2333312, 52927: 2342334, 52930: 2342518, 52960: 2342764}
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | --------------------------------------------------
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | 
[2025-11-28 07:24:57] 2025-11-28 12:24:16,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 07:24:57] 2025-11-28 12:24:16,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:16,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | job 6898490941 has completed (purged errors)
[2025-11-28 07:24:57] 2025-11-28 12:24:17,043 | INFO     | overall cleanup function is called
[2025-11-28 07:24:57] 2025-11-28 12:24:18,124 | INFO     | --- collectZombieJob: --- 10, [3112509]
[2025-11-28 07:24:57] 2025-11-28 12:24:18,124 | INFO     | zombie collector waiting for pid 3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:18,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:24:57] 2025-11-28 12:24:18,124 | INFO     | collected zombie processes
[2025-11-28 07:24:57] 2025-11-28 12:24:18,124 | INFO     | will attempt to kill all subprocesses of pid=3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:19,806 | INFO     | PID=3101818 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:24:57] 2025-11-28 12:24:19,806 | INFO     | .. there are 88 such processes running
[2025-11-28 07:24:57] 2025-11-28 12:24:21,696 | INFO     | process IDs to be killed: [3112509] (in reverse order)
[2025-11-28 07:24:57] 2025-11-28 12:24:22,114 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:24:57] 2025-11-28 12:24:22,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:24:57] 2025-11-28 12:24:22,297 | INFO     | did not find any defunct processes belonging to 3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:22,490 | INFO     | did not find any defunct processes belonging to 3112509
[2025-11-28 07:24:57] 2025-11-28 12:24:22,506 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:24:57] 2025-11-28 12:24:22,507 | INFO     | ready for new job
[2025-11-28 07:24:57] 2025-11-28 12:24:22,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:24:57] 2025-11-28 12:24:22,533 | INFO     | ***************************************
[2025-11-28 07:24:57] 2025-11-28 12:24:22,533 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:24:57] 2025-11-28 12:24:22,533 | INFO     | ***************************************
[2025-11-28 07:24:57] 2025-11-28 12:24:22,533 | INFO     | 
[2025-11-28 07:24:57] 2025-11-28 12:24:22,564 | INFO     | architecture information:
[2025-11-28 07:24:57] 2025-11-28 12:24:22,576 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:24:57] 2025-11-28 12:24:22,626 | INFO     | cat /etc/os-release:
[2025-11-28 07:24:57] NAME="CentOS Linux"
[2025-11-28 07:24:57] VERSION="7 (Core)"
[2025-11-28 07:24:57] ID="centos"
[2025-11-28 07:24:57] ID_LIKE="rhel fedora"
[2025-11-28 07:24:57] VERSION_ID="7"
[2025-11-28 07:24:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:24:57] ANSI_COLOR="0;31"
[2025-11-28 07:24:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:24:57] HOME_URL="https://www.centos.org/"
[2025-11-28 07:24:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:24:57] 
[2025-11-28 07:24:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:24:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:24:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:24:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:24:57] 
[2025-11-28 07:24:57] 2025-11-28 12:24:22,627 | INFO     | ***************************************
[2025-11-28 07:24:57] 2025-11-28 12:24:23,130 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 07:24:57] 2025-11-28 12:24:23,240 | INFO     | sufficient remaining disk space (121662078976 B)
[2025-11-28 07:24:57] 2025-11-28 12:24:23,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:24:57] 2025-11-28 12:24:23,241 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:24:57] 2025-11-28 12:24:23,241 | INFO     | update_server=False
[2025-11-28 07:24:57] 2025-11-28 12:24:23,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:24:57] 2025-11-28 12:24:23,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:24:57] 2025-11-28 12:24:23,245 | INFO     | aborting loop
[2025-11-28 07:24:57] 2025-11-28 12:24:23,601 | INFO     | all data control threads have been joined
[2025-11-28 07:24:57] 2025-11-28 12:24:23,701 | INFO     | all job control threads have been joined
[2025-11-28 07:24:57] 2025-11-28 12:24:24,158 | INFO     | all payload control threads have been joined
[2025-11-28 07:24:57] 2025-11-28 12:24:24,251 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,255 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,532 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,606 | INFO     | [data] control thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:24:57] 2025-11-28 12:24:24,696 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,711 | INFO     | [job] control thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:24,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:24:57] 2025-11-28 12:24:24,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,162 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,164 | INFO     | [payload] control thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,389 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,434 | INFO     | [job] validate thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:25,669 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:26,028 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:24:57] 2025-11-28 12:24:26,704 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:27,034 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:28,750 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:24:57] 2025-11-28 12:24:48,334 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:24:57] 2025-11-28 12:24:50,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913386325824)>', '<ExcThread(monitor, started 139912586196736)>']
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | INFO     | PID=3101818 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | INFO     | .. there are 87 such processes running
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:24:57] 2025-11-28 12:24:54,609 | INFO     | [monitor] control thread has ended
[2025-11-28 07:24:57] 2025-11-28 12:24:55,031 | INFO     | all workflow threads have been joined
[2025-11-28 07:24:57] 2025-11-28 12:24:55,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:24:57] 2025-11-28 12:24:55,031 | INFO     | traces error code: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:55,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:24:57] 2025-11-28 12:24:56,049 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:24:57] 2025-11-28 12:24:56,070 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:24:57] 2025-11-28 12:24:56,109 [wrapper] pilotpid: 3101818
[2025-11-28 07:24:57] 2025-11-28 12:24:56,125 [wrapper] Pilot exit status: 0
[2025-11-28 07:24:57] 2025-11-28 12:24:56,250 [wrapper] pandaids: 6898490941
[2025-11-28 07:24:57] 2025-11-28 12:24:56,867 [wrapper] cleanup supervisor_pilot  185182 3101819
[2025-11-28 07:24:57] 2025-11-28 12:24:56,905 [wrapper] Test setup, not cleaning
[2025-11-28 07:24:57] 2025-11-28 12:24:56,926 [wrapper] apfmon messages muted
[2025-11-28 07:24:57] 2025-11-28 12:24:56,958 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:24:57] 2025-11-28 12:24:56,970 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:24:57]  *** Error codes and diagnostics ***
[2025-11-28 07:24:57]     "exeErrorCode": 0,
[2025-11-28 07:24:57]     "exeErrorDiag": "",
[2025-11-28 07:24:57]     "pilotErrorCode": 0,
[2025-11-28 07:24:57]     "pilotErrorDiag": "",
[2025-11-28 07:24:57]  *** Listing of results directory ***
[2025-11-28 07:24:57] total 1324488
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 07:24:57] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas       100 Nov 27 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:24:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 16:40 run_atlas
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas       105 Nov 27 16:40 job.xml
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas 409889244 Nov 27 16:40 EVNT.47483658._002656.pool.root.1
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 16:40 input.tar.gz
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 16:40 start_atlas.sh
[2025-11-28 07:24:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 16:40 shared
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas         0 Nov 27 16:40 boinc_lockfile
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 16:40 pandaJob.out
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas        57 Nov 27 16:40 setup.sh.local
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas    991540 Nov 27 16:41 agis_schedconf.cvmfs.json
[2025-11-28 07:24:57] drwx------. 5 boincer umatlas      4096 Nov 27 16:41 pilot3
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas       532 Nov 28 07:02 boinc_task_state.xml
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 07:18 init_data.xml
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas 925889632 Nov 28 07:22 HITS.47556161._006381.pool.root.1
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas      1063 Nov 28 07:23 memory_monitor_summary.json
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas   1516240 Nov 28 07:23 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas   2002059 Nov 28 07:23 log.47556161._006381.job.log.tgz.1
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas        95 Nov 28 07:24 pilot_heartbeat.json
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas      8609 Nov 28 07:24 heartbeat.json
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas      4825 Nov 28 07:24 pilotlog.txt
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 07:24 boinc_mmap_file
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas        29 Nov 28 07:24 wrapper_checkpoint.txt
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas   6283943 Nov 28 07:24 log.47556161._006381.job.log.1
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas       353 Nov 28 07:24 output.list
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas       620 Nov 28 07:24 runtime_log
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas   8304640 Nov 28 07:24 result.tar.gz
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas       665 Nov 28 07:24 tbYKDmCgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmU6JKDm5KLnMn.diag
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas      9338 Nov 28 07:24 runtime_log.err
[2025-11-28 07:24:57] -rw-r--r--. 1 boincer umatlas     21853 Nov 28 07:24 stderr.txt
[2025-11-28 07:24:57] HITS file was successfully produced:
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas 925889632 Nov 28 07:22 shared/HITS.pool.root.1
[2025-11-28 07:24:57]  *** Contents of shared directory: ***
[2025-11-28 07:24:57] total 1313192
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas 409889244 Nov 27 16:40 ATLAS.root_0
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 16:40 input.tar.gz
[2025-11-28 07:24:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 16:40 start_atlas.sh
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas 925889632 Nov 28 07:22 HITS.pool.root.1
[2025-11-28 07:24:57] -rw-------. 1 boincer umatlas   8304640 Nov 28 07:24 result.tar.gz
07:24:58 (3097742): run_atlas exited; CPU time 192040.223598
07:24:58 (3097742): called boinc_finish(0)

</stderr_txt>
]]>

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