Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:29:12 (2272679): wrapper (7.7.26015): starting
13:29:12 (2272679): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 13:29:12] Arguments: --nthreads 8
[2025-11-27 13:29:12] Threads: 8
[2025-11-27 13:29:12] Checking for CVMFS
[2025-11-27 13:29:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:29:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:29:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:29:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:29:15] 2.13.3.0 10223 31829 253816 153379 3 570 37493041 40960000 44577 16776704 0 414552943 99.760 263100445 50933 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 13:29:15] CVMFS is ok
[2025-11-27 13:29:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:29:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:29:15] Further information can be found at the LHC@home message board.
[2025-11-27 13:29:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:29:15] Checking for apptainer binary...
[2025-11-27 13:29:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:29:15] Running /usr/bin/apptainer --version
[2025-11-27 13:29:15] apptainer version 1.4.4-1.el9
[2025-11-27 13:29:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:29:15] c8-7-6.aglt2.org
[2025-11-27 13:29:15] apptainer works
[2025-11-27 13:29:15] Set ATHENA_PROC_NUMBER=8
[2025-11-27 13:29:15] Set ATHENA_CORE_NUMBER=8
[2025-11-27 13:29:16] Starting ATLAS job with PandaID=6898489585
[2025-11-27 13:29:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:55:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:55:45] 2025-11-28 03:54:57,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:45] 2025-11-28 03:54:58,531 | INFO     | PID=2292667 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:55:45] 2025-11-28 03:54:58,532 | INFO     | .. there are 65 such processes running
[2025-11-27 22:55:45] 2025-11-28 03:54:59,533 | INFO     | time since job start (33880s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:00,147 | INFO     | monitor loop #2024: job 0:6898489585 is in state 'finished'
[2025-11-27 22:55:45] 2025-11-28 03:55:00,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:45] 2025-11-28 03:55:01,548 | INFO     | time since job start (33882s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:02,685 | INFO     | monitor loop #2025: job 0:6898489585 is in state 'finished'
[2025-11-27 22:55:45] 2025-11-28 03:55:02,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:45] 2025-11-28 03:55:03,558 | INFO     | time since job start (33884s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:05,192 | INFO     | monitor loop #2026: job 0:6898489585 is in state 'finished'
[2025-11-27 22:55:45] 2025-11-28 03:55:05,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:45] 2025-11-28 03:55:05,578 | INFO     | time since job start (33886s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:07,596 | INFO     | time since job start (33888s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:07,710 | INFO     | monitor loop #2027: job 0:6898489585 is in state 'finished'
[2025-11-27 22:55:45] 2025-11-28 03:55:07,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,185 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:55:45] 2025-11-28 03:55:09,194 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3749.9949765625015
[2025-11-27 22:55:45] 2025-11-28 03:55:09,223 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898489585/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,223 | INFO     | extracted standard info from prmon json
[2025-11-27 22:55:45] 2025-11-28 03:55:09,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:55:45] 2025-11-28 03:55:09,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:55:45] 2025-11-28 03:55:09,232 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:55:45] 2025-11-28 03:55:09,233 | INFO     | sum of square deviations: 52439306032.52508
[2025-11-27 22:55:45] 2025-11-28 03:55:09,245 | INFO     | sum of deviations: 512610480394.6563
[2025-11-27 22:55:45] 2025-11-28 03:55:09,247 | INFO     | mean x: 1764285202.933092
[2025-11-27 22:55:45] 2025-11-28 03:55:09,247 | INFO     | mean y: 2728154.4231464737
[2025-11-27 22:55:45] 2025-11-28 03:55:09,247 | INFO     | intersect: -17243706893.1302
[2025-11-27 22:55:45] 2025-11-28 03:55:09,248 | INFO     | chi2: 33.02746549579072
[2025-11-27 22:55:45] 2025-11-28 03:55:09,248 | INFO     | sum of square deviations: 51029892793.13136
[2025-11-27 22:55:45] 2025-11-28 03:55:09,260 | INFO     | sum of deviations: 679428595647.4808
[2025-11-27 22:55:45] 2025-11-28 03:55:09,260 | INFO     | mean x: 1764285050.4416058
[2025-11-27 22:55:45] 2025-11-28 03:55:09,260 | INFO     | mean y: 2746194.9525547447
[2025-11-27 22:55:45] 2025-11-28 03:55:09,260 | INFO     | intersect: -23487518991.431126
[2025-11-27 22:55:45] 2025-11-28 03:55:09,261 | INFO     | chi2: 29.828620226812586
[2025-11-27 22:55:45] 2025-11-28 03:55:09,261 | INFO     | current chi2=29.828620226812586 (change=9.685409464392059 %)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,261 | INFO     | right removable region: 547
[2025-11-27 22:55:45] 2025-11-28 03:55:09,261 | INFO     | sum of square deviations: 51029578033.13139
[2025-11-27 22:55:45] 2025-11-28 03:55:09,277 | INFO     | sum of deviations: 293994809547.3769
[2025-11-27 22:55:45] 2025-11-28 03:55:09,277 | INFO     | mean x: 1764285355.4416058
[2025-11-27 22:55:45] 2025-11-28 03:55:09,277 | INFO     | mean y: 2751801.027372263
[2025-11-27 22:55:45] 2025-11-28 03:55:09,277 | INFO     | intersect: -10161759783.283918
[2025-11-27 22:55:45] 2025-11-28 03:55:09,278 | INFO     | chi2: 28.10627358226447
[2025-11-27 22:55:45] 2025-11-28 03:55:09,278 | INFO     | current chi2=28.10627358226447 (change=14.900301429891572 %)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,278 | INFO     | left removable region: 10
[2025-11-27 22:55:45] 2025-11-28 03:55:09,278 | INFO     | sum of square deviations: 48017947450.17886
[2025-11-27 22:55:45] 2025-11-28 03:55:09,293 | INFO     | sum of deviations: 292194901198.96124
[2025-11-27 22:55:45] 2025-11-28 03:55:09,294 | INFO     | mean x: 1764285324.9608939
[2025-11-27 22:55:45] 2025-11-28 03:55:09,294 | INFO     | mean y: 2796632.331471136
[2025-11-27 22:55:45] 2025-11-28 03:55:09,294 | INFO     | intersect: -10733088668.651033
[2025-11-27 22:55:45] 2025-11-28 03:55:09,294 | INFO     | chi2: 20.17498535859161
[2025-11-27 22:55:45] 2025-11-28 03:55:09,294 | INFO     | current memory leak: 6.09 B/s (using 537 data points, chi2=20.17)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,295 | INFO     | could have reported an average CPU frequency of 3766 MHz (22 samples)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,295 | INFO     | ..............................
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . Timing measurements:
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . get job = 0 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . initial setup = 4 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . payload setup = 43 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . stage-in = 0 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,324 | INFO     | . payload execution = 33731 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,325 | INFO     | . stage-out = 6 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,325 | INFO     | . log creation = 2 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,325 | INFO     | ..............................
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | 
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | job summary report
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | --------------------------------------------------
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | PanDA job id: 6898489585
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | task id: 47556173
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | errors: (none)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | pilot state: finished 
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | transexitcode: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | exeerrorcode: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | exeerrordiag: 
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | exitcode: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | exitmsg: OK
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | cpuconsumptiontime: 139098 s
[2025-11-27 22:55:45] 2025-11-28 03:55:09,412 | INFO     | nevents: 1000
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | neventsw: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | pid: 2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | pgrp: 2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | corecount: 8
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | event service: False
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | sizes: {0: 2284145, 1: 2284344, 11: 2284344, 22: 2284372, 28: 2284662, 33: 2284690, 33778: 2325307, 33785: 2334301, 33788: 2334357, 33829: 2334603}
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | --------------------------------------------------
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | 
[2025-11-27 22:55:45] 2025-11-28 03:55:09,413 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 22:55:45] 2025-11-28 03:55:09,603 | INFO     | time since job start (33890s) is within the limit (172800.0s)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | job 6898489585 has completed (purged errors)
[2025-11-27 22:55:45] 2025-11-28 03:55:09,629 | INFO     | overall cleanup function is called
[2025-11-27 22:55:45] 2025-11-28 03:55:10,676 | INFO     | --- collectZombieJob: --- 10, [2321012]
[2025-11-27 22:55:45] 2025-11-28 03:55:10,676 | INFO     | zombie collector waiting for pid 2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:10,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:55:45] 2025-11-28 03:55:10,676 | INFO     | collected zombie processes
[2025-11-27 22:55:45] 2025-11-28 03:55:10,676 | INFO     | will attempt to kill all subprocesses of pid=2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:12,915 | INFO     | process IDs to be killed: [2321012] (in reverse order)
[2025-11-27 22:55:45] 2025-11-28 03:55:13,236 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:55:45] 2025-11-28 03:55:13,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:55:45] 2025-11-28 03:55:13,353 | INFO     | did not find any defunct processes belonging to 2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:13,443 | INFO     | did not find any defunct processes belonging to 2321012
[2025-11-27 22:55:45] 2025-11-28 03:55:13,455 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:55:45] 2025-11-28 03:55:13,456 | INFO     | ready for new job
[2025-11-27 22:55:45] 2025-11-28 03:55:13,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:55:45] 2025-11-28 03:55:13,459 | INFO     | ***************************************
[2025-11-27 22:55:45] 2025-11-28 03:55:13,459 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:55:45] 2025-11-28 03:55:13,459 | INFO     | ***************************************
[2025-11-27 22:55:45] 2025-11-28 03:55:13,459 | INFO     | 
[2025-11-27 22:55:45] 2025-11-28 03:55:13,484 | INFO     | architecture information:
[2025-11-27 22:55:45] 2025-11-28 03:55:13,488 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:55:45] 2025-11-28 03:55:13,591 | INFO     | cat /etc/os-release:
[2025-11-27 22:55:45] NAME="CentOS Linux"
[2025-11-27 22:55:45] VERSION="7 (Core)"
[2025-11-27 22:55:45] ID="centos"
[2025-11-27 22:55:45] ID_LIKE="rhel fedora"
[2025-11-27 22:55:45] VERSION_ID="7"
[2025-11-27 22:55:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:55:45] ANSI_COLOR="0;31"
[2025-11-27 22:55:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:55:45] HOME_URL="https://www.centos.org/"
[2025-11-27 22:55:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:55:45] 
[2025-11-27 22:55:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:55:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:55:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:55:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:55:45] 
[2025-11-27 22:55:45] 2025-11-28 03:55:13,591 | INFO     | ***************************************
[2025-11-27 22:55:45] 2025-11-28 03:55:14,097 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 22:55:45] 2025-11-28 03:55:14,187 | INFO     | sufficient remaining disk space (159254577152 B)
[2025-11-27 22:55:45] 2025-11-28 03:55:14,187 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:55:45] 2025-11-28 03:55:14,188 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:55:45] 2025-11-28 03:55:14,188 | INFO     | update_server=False
[2025-11-27 22:55:45] 2025-11-28 03:55:14,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:55:45] 2025-11-28 03:55:14,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:45] 2025-11-28 03:55:14,192 | INFO     | aborting loop
[2025-11-27 22:55:45] 2025-11-28 03:55:14,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:45] 2025-11-28 03:55:15,169 | INFO     | all data control threads have been joined
[2025-11-27 22:55:45] 2025-11-28 03:55:15,193 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,194 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,197 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:55:45] 2025-11-28 03:55:15,219 | INFO     | [job] validate thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,441 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,446 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,475 | INFO     | all payload control threads have been joined
[2025-11-27 22:55:45] 2025-11-28 03:55:15,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:55:45] 2025-11-28 03:55:15,771 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:15,891 | INFO     | all job control threads have been joined
[2025-11-27 22:55:45] 2025-11-28 03:55:15,904 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:16,175 | INFO     | [data] control thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:16,484 | INFO     | [payload] control thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:16,495 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:16,519 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:16,897 | INFO     | [job] control thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:17,710 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:18,137 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:55:45] 2025-11-28 03:55:19,228 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:55:45] 2025-11-28 03:55:19,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337659103040)>', '<ExcThread(monitor, started 140337175586560)>']
[2025-11-27 22:55:45] 2025-11-28 03:55:24,576 | INFO     | all workflow threads have been joined
[2025-11-27 22:55:45] 2025-11-28 03:55:24,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:55:45] 2025-11-28 03:55:24,576 | INFO     | traces error code: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:24,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:55:45] 2025-11-28 03:55:44,099 | INFO     | PID=2292667 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:55:45] 2025-11-28 03:55:44,103 | INFO     | .. there are 65 such processes running
[2025-11-27 22:55:45] 2025-11-28 03:55:44,104 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:55:45] 2025-11-28 03:55:44,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:55:45] 2025-11-28 03:55:44,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:55:45] 2025-11-28 03:55:44,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:55:45] 2025-11-28 03:55:44,104 | INFO     | [monitor] control thread has ended
[2025-11-27 22:55:45] 2025-11-28 03:55:44,440 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:55:45] 2025-11-28 03:55:44,486 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:55:45] 2025-11-28 03:55:44,496 [wrapper] pilotpid: 2292667
[2025-11-27 22:55:45] 2025-11-28 03:55:44,515 [wrapper] Pilot exit status: 0
[2025-11-27 22:55:45] 2025-11-28 03:55:44,852 [wrapper] pandaids: 6898489585
[2025-11-27 22:55:45] 2025-11-28 03:55:45,059 [wrapper] cleanup supervisor_pilot 1445502 2292668
[2025-11-27 22:55:45] 2025-11-28 03:55:45,115 [wrapper] Test setup, not cleaning
[2025-11-27 22:55:45] 2025-11-28 03:55:45,125 [wrapper] apfmon messages muted
[2025-11-27 22:55:45] 2025-11-28 03:55:45,170 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:55:45] 2025-11-28 03:55:45,226 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:55:45]  *** Error codes and diagnostics ***
[2025-11-27 22:55:45]     "exeErrorCode": 0,
[2025-11-27 22:55:45]     "exeErrorDiag": "",
[2025-11-27 22:55:45]     "pilotErrorCode": 0,
[2025-11-27 22:55:45]     "pilotErrorDiag": "",
[2025-11-27 22:55:45]  *** Listing of results directory ***
[2025-11-27 22:55:46] total 1318544
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 22:55:46] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas       100 Nov 27 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:55:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 13:29 run_atlas
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas       105 Nov 27 13:29 job.xml
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas 410318308 Nov 27 13:29 EVNT.47483658._003219.pool.root.1
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 13:29 start_atlas.sh
[2025-11-27 22:55:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 13:29 shared
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 13:29 input.tar.gz
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas         0 Nov 27 13:29 boinc_lockfile
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas      2787 Nov 27 13:29 pandaJob.out
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas        57 Nov 27 13:29 setup.sh.local
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas    991223 Nov 27 13:30 agis_schedconf.cvmfs.json
[2025-11-27 22:55:46] drwx------. 5 boincer umatlas      4096 Nov 27 13:30 pilot3
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:26 boinc_task_state.xml
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 22:49 init_data.xml
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas 923793457 Nov 27 22:53 HITS.47556173._001752.pool.root.1
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas      1052 Nov 27 22:54 memory_monitor_summary.json
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas   1789577 Nov 27 22:54 log.47556173._001752.job.log.tgz.1
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas      8595 Nov 27 22:55 heartbeat.json
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas        95 Nov 27 22:55 pilot_heartbeat.json
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas       823 Nov 27 22:55 pilotlog.txt
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:55 wrapper_checkpoint.txt
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:55 boinc_mmap_file
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas   4291085 Nov 27 22:55 log.47556173._001752.job.log.1
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas       353 Nov 27 22:55 output.list
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:55 runtime_log
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas   6103040 Nov 27 22:55 result.tar.gz
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 22:55 runtime_log.err
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas       660 Nov 27 22:55 NPeKDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvFNKDmOSGw1m.diag
[2025-11-27 22:55:46] -rw-r--r--. 1 boincer umatlas     21879 Nov 27 22:55 stderr.txt
[2025-11-27 22:55:46] HITS file was successfully produced:
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas 923793457 Nov 27 22:53 shared/HITS.pool.root.1
[2025-11-27 22:55:46]  *** Contents of shared directory: ***
[2025-11-27 22:55:46] total 1309412
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas 410318308 Nov 27 13:29 ATLAS.root_0
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 13:29 start_atlas.sh
[2025-11-27 22:55:46] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 13:29 input.tar.gz
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas 923793457 Nov 27 22:53 HITS.pool.root.1
[2025-11-27 22:55:46] -rw-------. 1 boincer umatlas   6103040 Nov 27 22:55 result.tar.gz
22:55:47 (2272679): run_atlas exited; CPU time 139697.043512
22:55:47 (2272679): called boinc_finish(0)

</stderr_txt>
]]>

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