Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 18:35:16 (26336): vboxwrapper version 26210
2025-11-27 18:35:16 (26336): BOINC client version: 8.2.4
2025-11-27 18:35:17 (26336): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-27 18:35:17 (26336): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 18:35:17 (26336): Create VM. (boinc_7c4f93f4836fdcc5, slot#3)
2025-11-27 18:35:19 (26336): Setting Memory Size for VM. (4800MB)
2025-11-27 18:35:20 (26336): Setting CPU Count for VM. (8)
2025-11-27 18:35:21 (26336): Setting Chipset Options for VM.
2025-11-27 18:35:22 (26336): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 18:35:23 (26336): Setting Boot Options for VM.
2025-11-27 18:35:25 (26336): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 18:35:27 (26336): Enabling VM Network Access.
2025-11-27 18:35:28 (26336): Disabling USB Support for VM.
2025-11-27 18:35:29 (26336): Disabling COM Port Support for VM.
2025-11-27 18:35:30 (26336): Disabling LPT Port Support for VM.
2025-11-27 18:35:32 (26336): Disabling Audio Support for VM.
2025-11-27 18:35:32 (26336): Disabling Clipboard Support for VM.
2025-11-27 18:35:33 (26336): Disabling Drag and Drop Support for VM.
2025-11-27 18:35:34 (26336): Adding storage controller(s) to VM.
2025-11-27 18:35:35 (26336): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 18:35:38 (26336): Adding VirtualBox Guest Additions to VM.
2025-11-27 18:35:39 (26336): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 18:35:40 (26336): forwarding host port 56463 to guest port 80
2025-11-27 18:35:41 (26336): Enabling remote desktop for VM.
2025-11-27 18:35:41 (26336): Required extension pack not installed, remote desktop not enabled.
2025-11-27 18:35:41 (26336): Enabling shared directory for VM.
2025-11-27 18:35:43 (26336): Starting VM using VBoxManage interface. (boinc_7c4f93f4836fdcc5, slot#3)
2025-11-27 18:35:52 (26336): Successfully started VM. (PID = '4016')
2025-11-27 18:35:52 (26336): Reporting VM Process ID to BOINC.
2025-11-27 18:35:52 (26336): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-27 18:35:52 (26336): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 18:35:52 (26336): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 18:35:52 (26336): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 18:35:52 (26336): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 18:35:52 (26336): Detected: Web Application Enabled (http://localhost:56463)
2025-11-27 18:35:52 (26336): Preference change detected
2025-11-27 18:35:52 (26336): Setting CPU throttle for VM. (100%)
2025-11-27 18:35:53 (26336): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 18:35:54 (26336): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 18:35:54 (26336): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 18:36:05 (26336): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 18:36:05 (26336): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 18:36:05 (26336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 18:36:15 (26336): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 18:36:15 (26336): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 18:36:55 (26336): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000087 main     Log opened 2025-11-27T18:36:53.573707000Z
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000164 main     OS Product: Linux
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000222 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000253 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000274 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000274 main     Process ID: 1383
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000274 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 18:36:55 (26336): Guest Log: 00:00:00.000733 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 18:36:56 (26336): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 18:36:56 (26336): Guest Log: [INFO] Mounting shared directory
2025-11-27 18:36:56 (26336): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 18:37:05 (26336): Guest Log: 00:00:10.026981 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 452 032 000ns (GuestNow=1 764 265 025 123 267 000 ns GuestLast=1 764 268 613 575 299 000 ns fSetTimeLastLoop=true )
2025-11-27 18:37:52 (26336): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 18:37:52 (26336): Guest Log: [INFO] Detected branch: prod
2025-11-27 18:37:52 (26336): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 18:37:52 (26336): Guest Log: Copying input files
2025-11-27 18:37:54 (26336): Guest Log: Copied input files into RunAtlas.
2025-11-27 18:37:54 (26336): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 18:37:54 (26336): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 18:37:54 (26336): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 18:37:54 (26336): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 18:39:00 (26336): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 18:39:01 (26336): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 18:39:01 (26336): Guest Log: 2.6.3.0 1678 1 30100 153377 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 18:39:07 (26336): Guest Log: copied the webapp to /var/www
2025-11-27 18:39:07 (26336): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 18:39:07 (26336): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 18:39:07 (26336): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 18:39:07 (26336): Guest Log:  *** Starting ATLAS job. (PandaID=6899448720 taskID=47556173) ***
2025-11-27 20:16:21 (26336): Status Report: Elapsed Time: '6000.000000'
2025-11-27 20:16:21 (26336): Status Report: CPU Time: '39687.140625'
2025-11-27 21:56:57 (26336): Status Report: Elapsed Time: '12000.000000'
2025-11-27 21:56:57 (26336): Status Report: CPU Time: '83282.046875'
2025-11-27 23:37:32 (26336): Status Report: Elapsed Time: '18000.000000'
2025-11-27 23:37:32 (26336): Status Report: CPU Time: '126818.468750'
2025-11-28 01:18:07 (26336): Status Report: Elapsed Time: '24000.000000'
2025-11-28 01:18:07 (26336): Status Report: CPU Time: '170333.437500'
2025-11-28 02:58:44 (26336): Status Report: Elapsed Time: '30000.000000'
2025-11-28 02:58:44 (26336): Status Report: CPU Time: '213909.906250'
2025-11-28 04:39:20 (26336): Status Report: Elapsed Time: '36000.000000'
2025-11-28 04:39:20 (26336): Status Report: CPU Time: '257119.125000'
2025-11-28 04:45:57 (26336): Guest Log:  *** Job finished ***
2025-11-28 04:45:57 (26336): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:14,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:14,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:36,230 | INFO     | [monitor] cgroup control has ended
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:36,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369464235840)>', '<ExcThread(monitor, started 140369035511552)>']
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:37,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:37,283 | INFO     | [monitor] control thread has ended
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:41,877 | INFO     | all workflow threads have been joined
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:41,877 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:41,877 | INFO     | traces error code: 0
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:41,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,109 [wrapper] ==== pilot stdout END ====
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,113 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,116 [wrapper] pilotpid: 6119
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,120 [wrapper] Pilot exit status: 0
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,163 [wrapper] pandaids: 6899448720
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,187 [wrapper] cleanup supervisor_pilot 17296 6120
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,191 [wrapper] Test setup, not cleaning
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,195 [wrapper] apfmon messages muted
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,199 [wrapper] ==== wrapper stdout END ====
2025-11-28 04:45:57 (26336): Guest Log: 2025-11-28 03:45:42,202 [wrapper] ==== wrapper stderr END ====
2025-11-28 04:45:57 (26336): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 04:45:57 (26336): Guest Log:     "exeErrorCode": 0,
2025-11-28 04:45:57 (26336): Guest Log:     "exeErrorDiag": "",
2025-11-28 04:45:57 (26336): Guest Log:     "pilotErrorCode": 0,
2025-11-28 04:45:57 (26336): Guest Log:     "pilotErrorDiag": "",
2025-11-28 04:45:57 (26336): Guest Log:  *** Listing of results directory ***
2025-11-28 04:45:57 (26336): Guest Log: total 911024
2025-11-28 04:45:57 (26336): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 27 01:09 pilot3.tar.gz
2025-11-28 04:45:57 (26336): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 27 01:29 runpilot2-wrapper.sh
2025-11-28 04:45:57 (26336): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 27 01:31 queuedata.json
2025-11-28 04:45:57 (26336): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 17:37 start_atlas.sh
2025-11-28 04:45:57 (26336): Guest Log: -rwxr-xr-x. 1 atlas atlas    590109 Nov 27 17:37 input.tar.gz
2025-11-28 04:45:57 (26336): Guest Log: -rwxr-xr-x. 1 atlas atlas      8757 Nov 27 17:37 init_data.xml
2025-11-28 04:45:57 (26336): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 17:37 EVNT.47483658._003299.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 04:45:57 (26336): Guest Log: -rw-r--r--. 1 atlas atlas      2787 Nov 27 17:39 pandaJob.out
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas    991231 Nov 27 17:39 agis_schedconf.cvmfs.json
2025-11-28 04:45:57 (26336): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 17:39 pilot3
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas 915820114 Nov 28 03:44 HITS.47556173._002555.pool.root.1
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 28 03:44 memory_monitor_summary.json
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 03:44 agis_ddmendpoints.agis.ALL.json
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas   1846074 Nov 28 03:44 log.47556173._002555.job.log.tgz.1
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas      8605 Nov 28 03:44 heartbeat.json
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas        95 Nov 28 03:45 pilot_heartbeat.json
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas      5063 Nov 28 03:45 pilotlog.txt
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas   4765442 Nov 28 03:45 log.47556173._002555.job.log.1
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 03:45 output.list
2025-11-28 04:45:57 (26336): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 03:45 runtime_log
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas   6635520 Nov 28 03:45 result.tar.gz
2025-11-28 04:45:57 (26336): Guest Log: -rw-r--r--. 1 atlas atlas      8725 Nov 28 03:45 runtime_log.err
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas       657 Nov 28 03:45 DRJLDmF0fi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfgNKDmOUEzxm.diag
2025-11-28 04:45:57 (26336): Guest Log: Looking for outputfile HITS.47556173._002555.pool.root.1
2025-11-28 04:45:57 (26336): Guest Log: HITS file was successfully produced
2025-11-28 04:45:57 (26336): Guest Log: -rw-------. 1 atlas atlas 915820114 Nov 28 03:44 /home/atlas/RunAtlas/HITS.47556173._002555.pool.root.1
2025-11-28 04:46:10 (26336): Guest Log: Successfully finished the ATLAS job!
2025-11-28 04:46:10 (26336): Guest Log: Copying the results back to the shared directory!
2025-11-28 04:46:10 (26336): Guest Log:  *** Contents of shared directory: ***
2025-11-28 04:46:10 (26336): Guest Log: total 1300600
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root 408733017 Nov 27 17:35 ATLAS.root_0
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root 915820114 Nov 28  2025 HITS.pool.root.1
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root      8757 Nov 27 17:35 init_data.xml
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root    590109 Nov 27 17:34 input.tar.gz
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root   6635520 Nov 28  2025 result.tar.gz
2025-11-28 04:46:10 (26336): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 17:34 start_atlas.sh
2025-11-28 04:46:10 (26336): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 04:46:10 (26336): VM Completion File Detected.
2025-11-28 04:46:10 (26336): Powering off VM.
2025-11-28 04:46:11 (26336): Successfully stopped VM.
2025-11-28 04:46:11 (26336): Deregistering VM. (boinc_7c4f93f4836fdcc5, slot#3)
2025-11-28 04:46:11 (26336): Removing network bandwidth throttle group from VM.
2025-11-28 04:46:12 (26336): Removing VM from VirtualBox.
2025-11-28 04:46:17 (26336): called boinc_finish(0)

</stderr_txt>
]]>

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