Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:21:30 (3311598): wrapper (7.7.26015): starting
03:21:30 (3311598): wrapper: running run_atlas (--nthreads 4)
[2025-11-30 03:21:30] Arguments: --nthreads 4
[2025-11-30 03:21:30] Threads: 4
[2025-11-30 03:21:30] Checking for CVMFS
[2025-11-30 03:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 03:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 03:21:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 03:21:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 03:21:30] 2.9.2.0 844198 16480 98964 153464 0 80 35680371 36864001 0 130560 1 6499413 99.951 761951 1255 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-30 03:21:30] CVMFS is ok
[2025-11-30 03:21:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 03:21:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 03:21:30] Further information can be found at the LHC@home message board.
[2025-11-30 03:21:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 03:21:30] Checking for apptainer binary...
[2025-11-30 03:21:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 03:21:30] Running /usr/bin/apptainer --version
[2025-11-30 03:21:30] apptainer version 1.4.1-1.1
[2025-11-30 03:21:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 03:21:30] thA309
[2025-11-30 03:21:30] apptainer works
[2025-11-30 03:21:31] Set ATHENA_PROC_NUMBER=4
[2025-11-30 03:21:31] Set ATHENA_CORE_NUMBER=4
[2025-11-30 03:21:31] Starting ATLAS job with PandaID=6894246168
[2025-11-30 03:21:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 10:22:44]  *** The last 200 lines of the pilot log: ***
[2025-11-30 10:22:44] 2025-11-30 09:22:13,082 | INFO     | --- collectZombieJob: --- 10, [3321988]
[2025-11-30 10:22:44] 2025-11-30 09:22:13,083 | INFO     | zombie collector waiting for pid 3321988
[2025-11-30 10:22:44] 2025-11-30 09:22:13,083 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 10:22:44] 2025-11-30 09:22:13,083 | INFO     | collected zombie processes
[2025-11-30 10:22:44] 2025-11-30 09:22:13,083 | INFO     | will attempt to kill all subprocesses of pid=3321988
[2025-11-30 10:22:44] 2025-11-30 09:22:13,134 | INFO     | process IDs to be killed: [3321988] (in reverse order)
[2025-11-30 10:22:44] 2025-11-30 09:22:13,171 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 10:22:44] 2025-11-30 09:22:13,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 10:22:44] 2025-11-30 09:22:13,173 | INFO     | did not find any defunct processes belonging to 3321988
[2025-11-30 10:22:44] 2025-11-30 09:22:13,175 | INFO     | did not find any defunct processes belonging to 3321988
[2025-11-30 10:22:44] 2025-11-30 09:22:13,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 10:22:44] 2025-11-30 09:22:13,175 | INFO     | ready for new job
[2025-11-30 10:22:44] 2025-11-30 09:22:13,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 10:22:44] 2025-11-30 09:22:13,177 | INFO     | ***************************************
[2025-11-30 10:22:44] 2025-11-30 09:22:13,177 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 10:22:44] 2025-11-30 09:22:13,177 | INFO     | ***************************************
[2025-11-30 10:22:44] 2025-11-30 09:22:13,177 | INFO     | 
[2025-11-30 10:22:44] 2025-11-30 09:22:13,177 | INFO     | architecture information:
[2025-11-30 10:22:44] 2025-11-30 09:22:13,178 | INFO     | executing command: cat /etc/os-release
[2025-11-30 10:22:44] 2025-11-30 09:22:13,194 | INFO     | cat /etc/os-release:
[2025-11-30 10:22:44] NAME="CentOS Linux"
[2025-11-30 10:22:44] VERSION="7 (Core)"
[2025-11-30 10:22:44] ID="centos"
[2025-11-30 10:22:44] ID_LIKE="rhel fedora"
[2025-11-30 10:22:44] VERSION_ID="7"
[2025-11-30 10:22:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 10:22:44] ANSI_COLOR="0;31"
[2025-11-30 10:22:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 10:22:44] HOME_URL="https://www.centos.org/"
[2025-11-30 10:22:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 10:22:44] 
[2025-11-30 10:22:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 10:22:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 10:22:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 10:22:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 10:22:44] 
[2025-11-30 10:22:44] 2025-11-30 09:22:13,194 | INFO     | ***************************************
[2025-11-30 10:22:44] 2025-11-30 09:22:13,697 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | INFO     | sufficient remaining disk space (220627730432 B)
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | INFO     | update_server=False
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 10:22:44] 2025-11-30 09:22:13,717 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 10:22:44] 2025-11-30 09:22:13,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 10:22:44] 2025-11-30 09:22:13,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 10:22:44] 2025-11-30 09:22:13,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 10:22:44] 2025-11-30 09:22:13,886 | INFO     | aborting loop
[2025-11-30 10:22:44] 2025-11-30 09:22:13,914 | INFO     | all job control threads have been joined
[2025-11-30 10:22:44] 2025-11-30 09:22:14,072 | INFO     | all data control threads have been joined
[2025-11-30 10:22:44] 2025-11-30 09:22:14,187 | INFO     | [monitor] cgroup control has ended
[2025-11-30 10:22:44] 2025-11-30 09:22:14,317 | INFO     | all payload control threads have been joined
[2025-11-30 10:22:44] 2025-11-30 09:22:14,723 | INFO     | [job] retrieve thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:14,723 | INFO     | [job] queue monitor thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:14,792 | INFO     | [job] validate thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:14,891 | INFO     | [job] job monitor thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:14,920 | INFO     | [job] control thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,007 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,040 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,078 | INFO     | [data] control thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,180 | INFO     | [payload] validate_post thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,322 | INFO     | [payload] control thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,755 | INFO     | [data] copytool_in thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,763 | INFO     | [data] copytool_out thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:15,878 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:16,163 | INFO     | [payload] failed_post thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:17,865 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:24,502 | INFO     | job.realtimelogging is not enabled
[2025-11-30 10:22:44] 2025-11-30 09:22:25,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 10:22:44] 2025-11-30 09:22:26,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258385114944)>', '<ExcThread(monitor, started 140257366361856)>']
[2025-11-30 10:22:44] 2025-11-30 09:22:31,767 | INFO     | all workflow threads have been joined
[2025-11-30 10:22:44] 2025-11-30 09:22:31,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 10:22:44] 2025-11-30 09:22:31,768 | INFO     | traces error code: 0
[2025-11-30 10:22:44] 2025-11-30 09:22:31,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | INFO     | PID=3315390 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 10:22:44] 2025-11-30 09:22:44,584 | INFO     | [monitor] control thread has ended
[2025-11-30 10:22:44] 2025-11-30 09:22:44,664 [wrapper] ==== pilot stdout END ====
[2025-11-30 10:22:44] 2025-11-30 09:22:44,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 10:22:44] 2025-11-30 09:22:44,672 [wrapper] pilotpid: 3315390
[2025-11-30 10:22:44] 2025-11-30 09:22:44,676 [wrapper] Pilot exit status: 0
[2025-11-30 10:22:44] 2025-11-30 09:22:44,687 [wrapper] pandaids: 6894246168
[2025-11-30 10:22:44] 2025-11-30 09:22:44,711 [wrapper] cleanup supervisor_pilot 3371409 3315391
[2025-11-30 10:22:44] 2025-11-30 09:22:44,715 [wrapper] Test setup, not cleaning
[2025-11-30 10:22:44] 2025-11-30 09:22:44,719 [wrapper] apfmon messages muted
[2025-11-30 10:22:44] 2025-11-30 09:22:44,723 [wrapper] ==== wrapper stdout END ====
[2025-11-30 10:22:44] 2025-11-30 09:22:44,727 [wrapper] ==== wrapper stderr END ====
[2025-11-30 10:22:44]  *** Error codes and diagnostics ***
[2025-11-30 10:22:44]     "exeErrorCode": 0,
[2025-11-30 10:22:44]     "exeErrorDiag": "",
[2025-11-30 10:22:44]     "pilotErrorCode": 0,
[2025-11-30 10:22:44]     "pilotErrorDiag": "",
[2025-11-30 10:22:44]  *** Listing of results directory ***
[2025-11-30 10:22:44] total 1301880
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-11-30 10:22:44] -rwx------ 1 boinc boinc     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc      5112 Nov 27 02:31 queuedata.json
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc       100 Nov 30 03:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 10:22:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 30 03:21 run_atlas
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc       105 Nov 30 03:21 job.xml
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc 409757660 Nov 30 03:21 EVNT.47493127._001025.pool.root.1
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc    590106 Nov 30 03:21 input.tar.gz
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc     15847 Nov 30 03:21 start_atlas.sh
[2025-11-30 10:22:44] drwxrwx--x 2 boinc boinc      4096 Nov 30 03:21 shared
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc         0 Nov 30 03:21 boinc_setup_complete
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc      6378 Nov 30 03:21 init_data.xml
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc         0 Nov 30 03:21 boinc_lockfile
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc      2787 Nov 30 03:21 pandaJob.out
[2025-11-30 10:22:44] -rw------- 1 boinc boinc    991772 Nov 30 03:21 agis_schedconf.cvmfs.json
[2025-11-30 10:22:44] drwx------ 5 boinc boinc      4096 Nov 30 03:21 pilot3
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc       532 Nov 30 10:18 boinc_task_state.xml
[2025-11-30 10:22:44] -rw------- 1 boinc boinc 909812968 Nov 30 10:21 HITS.47533962._000243.pool.root.1
[2025-11-30 10:22:44] -rw------- 1 boinc boinc      1030 Nov 30 10:22 memory_monitor_summary.json
[2025-11-30 10:22:44] -rw------- 1 boinc boinc        95 Nov 30 10:22 pilot_heartbeat.json
[2025-11-30 10:22:44] -rw------- 1 boinc boinc   1516240 Nov 30 10:22 agis_ddmendpoints.agis.ALL.json
[2025-11-30 10:22:44] -rw------- 1 boinc boinc   1268287 Nov 30 10:22 log.47533962._000243.job.log.tgz.1
[2025-11-30 10:22:44] -rw------- 1 boinc boinc      8570 Nov 30 10:22 heartbeat.json
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc      8192 Nov 30 10:22 boinc_mmap_file
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc        28 Nov 30 10:22 wrapper_checkpoint.txt
[2025-11-30 10:22:44] -rw------- 1 boinc boinc       747 Nov 30 10:22 pilotlog.txt
[2025-11-30 10:22:44] -rw------- 1 boinc boinc   3555490 Nov 30 10:22 log.47533962._000243.job.log.1
[2025-11-30 10:22:44] -rw------- 1 boinc boinc       353 Nov 30 10:22 output.list
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc       620 Nov 30 10:22 runtime_log
[2025-11-30 10:22:44] -rw------- 1 boinc boinc   4843520 Nov 30 10:22 result.tar.gz
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc      8898 Nov 30 10:22 runtime_log.err
[2025-11-30 10:22:44] -rw------- 1 boinc boinc       665 Nov 30 10:22 PL0NDmlzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsdNKDmdjnmSn.diag
[2025-11-30 10:22:44] -rw-r--r-- 1 boinc boinc     10931 Nov 30 10:22 stderr.txt
[2025-11-30 10:22:44] HITS file was successfully produced:
[2025-11-30 10:22:44] -rw------- 1 boinc boinc 909812968 Nov 30 10:21 shared/HITS.pool.root.1
[2025-11-30 10:22:44]  *** Contents of shared directory: ***
[2025-11-30 10:22:44] total 1293984
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc 409757660 Nov 30 03:21 ATLAS.root_0
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc    590106 Nov 30 03:21 input.tar.gz
[2025-11-30 10:22:44] -rw-r--r-- 2 boinc boinc     15847 Nov 30 03:21 start_atlas.sh
[2025-11-30 10:22:44] -rw------- 1 boinc boinc 909812968 Nov 30 10:21 HITS.pool.root.1
[2025-11-30 10:22:44] -rw------- 1 boinc boinc   4843520 Nov 30 10:22 result.tar.gz
10:22:46 (3311598): run_atlas exited; CPU time 98916.442083
10:22:46 (3311598): called boinc_finish(0)

</stderr_txt>
]]>

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