Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:57:36 (272898): wrapper (7.7.26015): starting
09:57:36 (272898): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 09:57:36] Arguments: --nthreads 12
[2025-11-27 09:57:36] Threads: 12
[2025-11-27 09:57:36] Checking for CVMFS
[2025-11-27 09:57:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:57:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:57:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:57:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:57:37] 2.11.3.0 1603625 30113 198796 153378 2 61 29647242 45568001 20020 130560 0 341837164 99.805 189869524 21839 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-27 09:57:37] CVMFS is ok
[2025-11-27 09:57:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:57:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:57:37] Further information can be found at the LHC@home message board.
[2025-11-27 09:57:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:57:37] Checking for apptainer binary...
[2025-11-27 09:57:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:57:37] Running /usr/bin/apptainer --version
[2025-11-27 09:57:37] apptainer version 1.4.1-1.el9
[2025-11-27 09:57:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:57:37] wns0171.triumf.lcg
[2025-11-27 09:57:37] apptainer works
[2025-11-27 09:57:38] Set ATHENA_PROC_NUMBER=12
[2025-11-27 09:57:38] Set ATHENA_CORE_NUMBER=12
[2025-11-27 09:57:38] Starting ATLAS job with PandaID=6894242098
[2025-11-27 09:57:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:04:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | wrong length of table data, x=[1764266327.0, 1764266388.0, 1764266449.0], y=[1290.0, 855356.0, 746309.0] (must be same and length>=4)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | could have reported an average CPU frequency of 2897 MHz (4 samples)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . Timing measurements:
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . get job = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . initial setup = 3 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload setup = 15 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-in = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload execution = 148 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-out = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . log creation = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894242098/pilotlog.txt
[2025-11-27 10:04:00] 2025-11-27 18:03:20,002 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 10:04:00] - Log from pilotlog.txt -
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894242098/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | extracted standard info from prmon json
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | wrong length of table data, x=[1764266327.0, 1764266388.0, 1764266449.0], y=[1290.0, 855356.0, 746309.0] (must be same and length>=4)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | could have reported an average CPU frequency of 2897 MHz (4 samples)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . Timing measurements:
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . get job = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . initial setup = 3 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload setup = 15 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-in = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload execution = 148 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-out = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . log creation = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894242098/pilotlog.txt
[2025-11-27 10:04:00] 2025-11-27 18:03:20,002 | WARNING  | 
[2025-11-27 10:04:00] [begin log extracts]
[2025-11-27 10:04:00] - Log from pilotlog.txt -
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894242098/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | extracted standard info from prmon json
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:04:00] 2025-11-27 18:03:19,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | WARNING  | wrong length of table data, x=[1764266327.0, 1764266388.0, 1764266449.0], y=[1290.0, 855356.0, 746309.0] (must be same and length>=4)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | could have reported an average CPU frequency of 2897 MHz (4 samples)
[2025-11-27 10:04:00] 2025-11-27 18:03:19,904 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . Timing measurements:
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . get job = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . initial setup = 3 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload setup = 15 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-in = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . payload execution = 148 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . stage-out = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | . log creation = 0 s
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | ..............................
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 10:04:00] 2025-11-27 18:03:19,905 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894242098/pilotlog.txt
[2025-11-27 10:04:00] [end log extracts]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,002 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 10:04:00] 2025-11-27 18:03:20,003 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 10:04:00] 2025-11-27 18:03:20,338 | INFO     | 
[2025-11-27 10:04:00] 2025-11-27 18:03:20,338 | INFO     | job summary report
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | --------------------------------------------------
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | PanDA job id: 6894242098
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | task id: 47533962
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 10:00:58,690 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | pilot state: failed 
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | transexitcode: 65
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | exeerrorcode: 65
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | exitcode: 65
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | cpuconsumptiontime: 37 s
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | nevents: 0
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | neventsw: 0
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | pid: 283261
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | pgrp: 283261
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | corecount: 12
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | event service: False
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | sizes: {0: 2284312, 7: 2284574, 11: 2284602, 168: 2310241, 169: 2314531, 171: 2314559, 302: 2314853}
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | --------------------------------------------------
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | 
[2025-11-27 10:04:00] 2025-11-27 18:03:20,339 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | job 6894242098 has completed (purged errors)
[2025-11-27 10:04:00] 2025-11-27 18:03:20,353 | INFO     | overall cleanup function is called
[2025-11-27 10:04:00] 2025-11-27 18:03:21,361 | INFO     | --- collectZombieJob: --- 10, [283261]
[2025-11-27 10:04:00] 2025-11-27 18:03:21,361 | INFO     | zombie collector waiting for pid 283261
[2025-11-27 10:04:00] 2025-11-27 18:03:21,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:04:00] 2025-11-27 18:03:21,361 | INFO     | collected zombie processes
[2025-11-27 10:04:00] 2025-11-27 18:03:21,361 | INFO     | will attempt to kill all subprocesses of pid=283261
[2025-11-27 10:04:00] 2025-11-27 18:03:21,776 | INFO     | process IDs to be killed: [283261] (in reverse order)
[2025-11-27 10:04:00] 2025-11-27 18:03:21,909 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:04:00] 2025-11-27 18:03:21,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:04:00] 2025-11-27 18:03:21,916 | INFO     | did not find any defunct processes belonging to 283261
[2025-11-27 10:04:00] 2025-11-27 18:03:21,923 | INFO     | did not find any defunct processes belonging to 283261
[2025-11-27 10:04:00] 2025-11-27 18:03:21,924 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:04:00] 2025-11-27 18:03:21,924 | INFO     | ready for new job
[2025-11-27 10:04:00] 2025-11-27 18:03:21,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:04:00] 2025-11-27 18:03:21,925 | INFO     | ***************************************
[2025-11-27 10:04:00] 2025-11-27 18:03:21,925 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:04:00] 2025-11-27 18:03:21,925 | INFO     | ***************************************
[2025-11-27 10:04:00] 2025-11-27 18:03:21,925 | INFO     | 
[2025-11-27 10:04:00] 2025-11-27 18:03:21,926 | INFO     | architecture information:
[2025-11-27 10:04:00] 2025-11-27 18:03:21,927 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:04:00] 2025-11-27 18:03:21,938 | INFO     | cat /etc/os-release:
[2025-11-27 10:04:00] NAME="CentOS Linux"
[2025-11-27 10:04:00] VERSION="7 (Core)"
[2025-11-27 10:04:00] ID="centos"
[2025-11-27 10:04:00] ID_LIKE="rhel fedora"
[2025-11-27 10:04:00] VERSION_ID="7"
[2025-11-27 10:04:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:04:00] ANSI_COLOR="0;31"
[2025-11-27 10:04:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:04:00] HOME_URL="https://www.centos.org/"
[2025-11-27 10:04:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:04:00] 
[2025-11-27 10:04:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:04:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:04:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:04:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:04:00] 
[2025-11-27 10:04:00] 2025-11-27 18:03:21,938 | INFO     | ***************************************
[2025-11-27 10:04:00] 2025-11-27 18:03:22,447 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 10:04:00] 2025-11-27 18:03:22,514 | INFO     | sufficient remaining disk space (2517092007936 B)
[2025-11-27 10:04:00] 2025-11-27 18:03:22,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:04:00] 2025-11-27 18:03:22,515 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:04:00] 2025-11-27 18:03:22,515 | INFO     | update_server=False
[2025-11-27 10:04:00] 2025-11-27 18:03:22,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:04:00] 2025-11-27 18:03:22,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:04:00] 2025-11-27 18:03:22,515 | INFO     | aborting loop
[2025-11-27 10:04:00] 2025-11-27 18:03:22,907 | INFO     | all job control threads have been joined
[2025-11-27 10:04:00] 2025-11-27 18:03:23,044 | INFO     | all payload control threads have been joined
[2025-11-27 10:04:00] 2025-11-27 18:03:23,135 | INFO     | all data control threads have been joined
[2025-11-27 10:04:00] 2025-11-27 18:03:23,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:04:00] 2025-11-27 18:03:23,519 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:23,521 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:23,913 | INFO     | [job] control thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,050 | INFO     | [payload] control thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,138 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,143 | INFO     | [data] control thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,181 | INFO     | [job] validate thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,352 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,405 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,446 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,706 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:24,874 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:25,328 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:25,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:04:00] 2025-11-27 18:03:25,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:04:00] 2025-11-27 18:03:26,371 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:29,757 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:04:00] 2025-11-27 18:03:52,003 | INFO     | PID=276567 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 10:04:00] 2025-11-27 18:03:52,003 | INFO     | .. there are 35 such processes running
[2025-11-27 10:04:00] 2025-11-27 18:03:52,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:04:00] 2025-11-27 18:03:52,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:04:00] 2025-11-27 18:03:52,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:04:00] 2025-11-27 18:03:52,599 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:04:00] 2025-11-27 18:03:53,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043546744640)>', '<ExcThread(monitor, started 140043138082560)>']
[2025-11-27 10:04:00] 2025-11-27 18:03:54,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:04:00] 2025-11-27 18:03:54,017 | INFO     | [monitor] control thread has ended
[2025-11-27 10:04:00] 2025-11-27 18:03:58,630 | INFO     | all workflow threads have been joined
[2025-11-27 10:04:00] 2025-11-27 18:03:58,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:04:00] 2025-11-27 18:03:58,630 | INFO     | traces error code: 0
[2025-11-27 10:04:00] 2025-11-27 18:03:58,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:04:00] 2025-11-27 18:03:59,031 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:04:00] 2025-11-27 18:03:59,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:04:00] 2025-11-27 18:03:59,073 [wrapper] pilotpid: 276567
[2025-11-27 10:04:00] 2025-11-27 18:03:59,083 [wrapper] Pilot exit status: 0
[2025-11-27 10:04:00] 2025-11-27 18:03:59,155 [wrapper] pandaids: 6894242098
[2025-11-27 10:04:00] 2025-11-27 18:03:59,305 [wrapper] cleanup supervisor_pilot  276573 276568
[2025-11-27 10:04:00] 2025-11-27 18:03:59,316 [wrapper] Test setup, not cleaning
[2025-11-27 10:04:00] 2025-11-27 18:03:59,336 [wrapper] apfmon messages muted
[2025-11-27 10:04:00] 2025-11-27 18:03:59,353 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:04:00] 2025-11-27 18:03:59,372 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:04:00]  *** Error codes and diagnostics ***
[2025-11-27 10:04:00]     "exeErrorCode": 65,
[2025-11-27 10:04:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 10:04:00]     "pilotErrorCode": 1305,
[2025-11-27 10:04:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 10:04:00]  *** Listing of results directory ***
[2025-11-27 10:04:00] total 404868
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:09 pilot3.tar.gz
[2025-11-27 10:04:00] -rwx------. 1 boinc boinc     36292 Nov 26 17:28 runpilot2-wrapper.sh
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:31 queuedata.json
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc       100 Nov 27 09:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:04:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 09:57 run_atlas
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc       105 Nov 27 09:57 job.xml
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc 410353508 Nov 27 09:57 EVNT.47493127._001019.pool.root.1
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:57 start_atlas.sh
[2025-11-27 10:04:00] drwxrwx--x. 2 boinc boinc      4096 Nov 27 09:57 shared
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc    590108 Nov 27 09:57 input.tar.gz
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc      6629 Nov 27 09:57 init_data.xml
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc         0 Nov 27 09:57 boinc_lockfile
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc      2787 Nov 27 09:57 pandaJob.out
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc    991231 Nov 27 09:57 agis_schedconf.cvmfs.json
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc   1516240 Nov 27 09:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:04:00] drwx------. 5 boinc boinc      4096 Nov 27 09:57 pilot3
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc       524 Nov 27 10:00 boinc_task_state.xml
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc       996 Nov 27 10:01 memory_monitor_summary.json
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc     49675 Nov 27 10:01 log.47533962._000188.job.log.tgz.1
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc        95 Nov 27 10:02 pilot_heartbeat.json
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc     10341 Nov 27 10:03 heartbeat.json
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc      8192 Nov 27 10:03 boinc_mmap_file
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc      4822 Nov 27 10:03 pilotlog.txt
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc        23 Nov 27 10:03 wrapper_checkpoint.txt
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc    109071 Nov 27 10:03 log.47533962._000188.job.log.1
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc       186 Nov 27 10:03 output.list
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc       620 Nov 27 10:04 runtime_log
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc    184320 Nov 27 10:04 result.tar.gz
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc      8636 Nov 27 10:04 runtime_log.err
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc       647 Nov 27 10:04 nRgMDmlzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5cNKDmdD4tgm.diag
[2025-11-27 10:04:00] -rw-r--r--. 1 boinc boinc     22534 Nov 27 10:04 stderr.txt
[2025-11-27 10:04:00] No HITS result produced
[2025-11-27 10:04:00]  *** Contents of shared directory: ***
[2025-11-27 10:04:00] total 401516
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc 410353508 Nov 27 09:57 ATLAS.root_0
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:57 start_atlas.sh
[2025-11-27 10:04:00] -rw-r--r--. 2 boinc boinc    590108 Nov 27 09:57 input.tar.gz
[2025-11-27 10:04:00] -rw-------. 1 boinc boinc    184320 Nov 27 10:04 result.tar.gz
10:04:02 (272898): run_atlas exited; CPU time 42.124826
10:04:02 (272898): called boinc_finish(0)

</stderr_txt>
]]>

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