Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:56:04 (637468): wrapper (7.7.26015): starting
16:56:04 (637468): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 16:56:04] Arguments: --nthreads 8
[2025-11-27 16:56:04] Threads: 8
[2025-11-27 16:56:04] Checking for CVMFS
[2025-11-27 16:56:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:56:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:56:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:56:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:56:06] 2.13.2.0 6869 38634 167396 153385 0 353 32004160 40960000 20713 16776704 0 77876801 99.778 43569663 42439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 16:56:06] CVMFS is ok
[2025-11-27 16:56:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:56:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:56:06] Further information can be found at the LHC@home message board.
[2025-11-27 16:56:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:56:06] Checking for apptainer binary...
[2025-11-27 16:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:56:06] Running /usr/bin/apptainer --version
[2025-11-27 16:56:06] apptainer version 1.4.4-1.el9
[2025-11-27 16:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:56:08] c-212-13.aglt2.org
[2025-11-27 16:56:08] apptainer works
[2025-11-27 16:56:08] Set ATHENA_PROC_NUMBER=8
[2025-11-27 16:56:08] Set ATHENA_CORE_NUMBER=8
[2025-11-27 16:56:08] Starting ATLAS job with PandaID=6898988818
[2025-11-27 16:56:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 10:25:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 10:25:04] 2025-11-28 15:24:01,060 | INFO     | time since job start (62812s) is within the limit (172800.0s)
[2025-11-28 10:25:04] 2025-11-28 15:24:01,861 | INFO     | monitor loop #4014: job 0:6898988818 is in state 'finished'
[2025-11-28 10:25:04] 2025-11-28 15:24:01,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,105 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 10:25:04] 2025-11-28 15:24:02,116 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3045.8453125000015
[2025-11-28 10:25:04] 2025-11-28 15:24:02,161 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898988818/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,163 | INFO     | extracted standard info from prmon json
[2025-11-28 10:25:04] 2025-11-28 15:24:02,163 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 10:25:04] 2025-11-28 15:24:02,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 10:25:04] 2025-11-28 15:24:02,177 | INFO     | fitting pss+swap vs Time
[2025-11-28 10:25:04] 2025-11-28 15:24:02,178 | INFO     | sum of square deviations: 337851989962.2684
[2025-11-28 10:25:04] 2025-11-28 15:24:02,200 | INFO     | sum of deviations: 2349350148300.527
[2025-11-28 10:25:04] 2025-11-28 15:24:02,201 | INFO     | mean x: 1764312052.2565598
[2025-11-28 10:25:04] 2025-11-28 15:24:02,201 | INFO     | mean y: 2946263.4412050536
[2025-11-28 10:25:04] 2025-11-28 15:24:02,201 | INFO     | intersect: -12265700672.988773
[2025-11-28 10:25:04] 2025-11-28 15:24:02,202 | INFO     | chi2: 6.656032328096332
[2025-11-28 10:25:04] 2025-11-28 15:24:02,203 | INFO     | sum of square deviations: 332951343589.33105
[2025-11-28 10:25:04] 2025-11-28 15:24:02,222 | INFO     | sum of deviations: 2732972547979.9883
[2025-11-28 10:25:04] 2025-11-28 15:24:02,222 | INFO     | mean x: 1764311899.7626953
[2025-11-28 10:25:04] 2025-11-28 15:24:02,222 | INFO     | mean y: 2958201.654296875
[2025-11-28 10:25:04] 2025-11-28 15:24:02,222 | INFO     | intersect: -14479085739.496433
[2025-11-28 10:25:04] 2025-11-28 15:24:02,223 | INFO     | chi2: 2.983004574130775
[2025-11-28 10:25:04] 2025-11-28 15:24:02,223 | INFO     | current chi2=2.983004574130775 (change=55.18344222069105 %)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,224 | INFO     | sum of square deviations: 328098326016.32434
[2025-11-28 10:25:04] 2025-11-28 15:24:02,244 | INFO     | sum of deviations: 2852343313688.6445
[2025-11-28 10:25:04] 2025-11-28 15:24:02,245 | INFO     | mean x: 1764311747.268891
[2025-11-28 10:25:04] 2025-11-28 15:24:02,245 | INFO     | mean y: 2961947.3042198233
[2025-11-28 10:25:04] 2025-11-28 15:24:02,245 | INFO     | intersect: -15335192552.558622
[2025-11-28 10:25:04] 2025-11-28 15:24:02,246 | INFO     | chi2: 2.3889509354008744
[2025-11-28 10:25:04] 2025-11-28 15:24:02,246 | INFO     | current chi2=2.3889509354008744 (change=19.9146070335143 %)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,246 | INFO     | right removable region: 1018
[2025-11-28 10:25:04] 2025-11-28 15:24:02,247 | INFO     | sum of square deviations: 332950554859.33105
[2025-11-28 10:25:04] 2025-11-28 15:24:02,267 | INFO     | sum of deviations: 2062271021301.5913
[2025-11-28 10:25:04] 2025-11-28 15:24:02,268 | INFO     | mean x: 1764312204.7626953
[2025-11-28 10:25:04] 2025-11-28 15:24:02,268 | INFO     | mean y: 2955185.373046875
[2025-11-28 10:25:04] 2025-11-28 15:24:02,268 | INFO     | intersect: -10925063642.972378
[2025-11-28 10:25:04] 2025-11-28 15:24:02,269 | INFO     | chi2: 4.511599301098421
[2025-11-28 10:25:04] 2025-11-28 15:24:02,269 | INFO     | current chi2=4.511599301098421 (change=32.21788779399202 %)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,270 | INFO     | sum of square deviations: 328096810777.8602
[2025-11-28 10:25:04] 2025-11-28 15:24:02,289 | INFO     | sum of deviations: 1999380692037.337
[2025-11-28 10:25:04] 2025-11-28 15:24:02,289 | INFO     | mean x: 1764312357.2679098
[2025-11-28 10:25:04] 2025-11-28 15:24:02,289 | INFO     | mean y: 2957160.420019627
[2025-11-28 10:25:04] 2025-11-28 15:24:02,289 | INFO     | intersect: -10748540403.610477
[2025-11-28 10:25:04] 2025-11-28 15:24:02,290 | INFO     | chi2: 4.4856563047485905
[2025-11-28 10:25:04] 2025-11-28 15:24:02,290 | INFO     | current chi2=4.4856563047485905 (change=0.5750288227838526 %)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,290 | INFO     | left removable region: 20
[2025-11-28 10:25:04] 2025-11-28 15:24:02,291 | INFO     | sum of square deviations: 308227357148.64886
[2025-11-28 10:25:04] 2025-11-28 15:24:02,310 | INFO     | sum of deviations: 2397869111803.962
[2025-11-28 10:25:04] 2025-11-28 15:24:02,310 | INFO     | mean x: 1764312326.791583
[2025-11-28 10:25:04] 2025-11-28 15:24:02,310 | INFO     | mean y: 2976139.019038076
[2025-11-28 10:25:04] 2025-11-28 15:24:02,311 | INFO     | intersect: -13722573958.56113
[2025-11-28 10:25:04] 2025-11-28 15:24:02,311 | INFO     | chi2: 0.17923096423607204
[2025-11-28 10:25:04] 2025-11-28 15:24:02,312 | INFO     | current memory leak: 7.78 B/s (using 998 data points, chi2=0.18)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | could have reported an average CPU frequency of 2973 MHz (38 samples)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | ..............................
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | . Timing measurements:
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | . get job = 0 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | . initial setup = 3 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,313 | INFO     | . payload setup = 20 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,314 | INFO     | . stage-in = 0 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,314 | INFO     | . payload execution = 62736 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,314 | INFO     | . stage-out = 5 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,314 | INFO     | . log creation = 1 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,314 | INFO     | ..............................
[2025-11-28 10:25:04] 2025-11-28 15:24:02,493 | INFO     | 
[2025-11-28 10:25:04] 2025-11-28 15:24:02,493 | INFO     | job summary report
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | --------------------------------------------------
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | PanDA job id: 6898988818
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | task id: 47556161
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | errors: (none)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | pilot state: finished 
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | transexitcode: 0
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | exeerrorcode: 0
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | exeerrordiag: 
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | exitcode: 0
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | exitmsg: OK
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | cpuconsumptiontime: 214267 s
[2025-11-28 10:25:04] 2025-11-28 15:24:02,494 | INFO     | nevents: 1000
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | neventsw: 0
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | pid: 649396
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | pgrp: 649396
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | corecount: 8
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | event service: False
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | sizes: {0: 2283489, 1: 2284174, 2: 2284373, 3: 2284373, 13: 2284401, 17: 2284719, 24: 2284875, 62761: 2339670, 62766: 2348720, 62779: 2348910}
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | --------------------------------------------------
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | 
[2025-11-28 10:25:04] 2025-11-28 15:24:02,495 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 10:25:04] 2025-11-28 15:24:02,696 | INFO     | job 6898988818 has completed (purged errors)
[2025-11-28 10:25:04] 2025-11-28 15:24:02,696 | INFO     | overall cleanup function is called
[2025-11-28 10:25:04] 2025-11-28 15:24:03,785 | INFO     | --- collectZombieJob: --- 10, [649396]
[2025-11-28 10:25:04] 2025-11-28 15:24:03,785 | INFO     | zombie collector waiting for pid 649396
[2025-11-28 10:25:04] 2025-11-28 15:24:03,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 10:25:04] 2025-11-28 15:24:03,786 | INFO     | collected zombie processes
[2025-11-28 10:25:04] 2025-11-28 15:24:03,786 | INFO     | will attempt to kill all subprocesses of pid=649396
[2025-11-28 10:25:04] 2025-11-28 15:24:04,252 | INFO     | process IDs to be killed: [649396] (in reverse order)
[2025-11-28 10:25:04] 2025-11-28 15:24:04,387 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 10:25:04] 2025-11-28 15:24:04,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 10:25:04] 2025-11-28 15:24:04,403 | INFO     | did not find any defunct processes belonging to 649396
[2025-11-28 10:25:04] 2025-11-28 15:24:04,419 | INFO     | did not find any defunct processes belonging to 649396
[2025-11-28 10:25:04] 2025-11-28 15:24:04,421 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 10:25:04] 2025-11-28 15:24:04,421 | INFO     | ready for new job
[2025-11-28 10:25:04] 2025-11-28 15:24:04,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 10:25:04] 2025-11-28 15:24:04,426 | INFO     | ***************************************
[2025-11-28 10:25:04] 2025-11-28 15:24:04,426 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 10:25:04] 2025-11-28 15:24:04,426 | INFO     | ***************************************
[2025-11-28 10:25:04] 2025-11-28 15:24:04,426 | INFO     | 
[2025-11-28 10:25:04] 2025-11-28 15:24:04,432 | INFO     | architecture information:
[2025-11-28 10:25:04] 2025-11-28 15:24:04,433 | INFO     | executing command: cat /etc/os-release
[2025-11-28 10:25:04] 2025-11-28 15:24:04,512 | INFO     | cat /etc/os-release:
[2025-11-28 10:25:04] NAME="CentOS Linux"
[2025-11-28 10:25:04] VERSION="7 (Core)"
[2025-11-28 10:25:04] ID="centos"
[2025-11-28 10:25:04] ID_LIKE="rhel fedora"
[2025-11-28 10:25:04] VERSION_ID="7"
[2025-11-28 10:25:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 10:25:04] ANSI_COLOR="0;31"
[2025-11-28 10:25:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 10:25:04] HOME_URL="https://www.centos.org/"
[2025-11-28 10:25:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 10:25:04] 
[2025-11-28 10:25:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 10:25:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 10:25:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 10:25:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 10:25:04] 
[2025-11-28 10:25:04] 2025-11-28 15:24:04,512 | INFO     | ***************************************
[2025-11-28 10:25:04] 2025-11-28 15:24:05,015 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 10:25:04] 2025-11-28 15:24:05,079 | INFO     | sufficient remaining disk space (121045516288 B)
[2025-11-28 10:25:04] 2025-11-28 15:24:05,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 10:25:04] 2025-11-28 15:24:05,080 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 10:25:04] 2025-11-28 15:24:05,080 | INFO     | update_server=False
[2025-11-28 10:25:04] 2025-11-28 15:24:05,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 10:25:04] 2025-11-28 15:24:05,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 10:25:04] 2025-11-28 15:24:05,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 10:25:04] 2025-11-28 15:24:05,246 | INFO     | all data control threads have been joined
[2025-11-28 10:25:04] 2025-11-28 15:24:05,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:25:04] 2025-11-28 15:24:05,396 | INFO     | aborting loop
[2025-11-28 10:25:04] 2025-11-28 15:24:05,445 | INFO     | all payload control threads have been joined
[2025-11-28 10:25:04] 2025-11-28 15:24:06,086 | INFO     | [job] retrieve thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,104 | INFO     | all job control threads have been joined
[2025-11-28 10:25:04] 2025-11-28 15:24:06,252 | INFO     | [data] control thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,401 | INFO     | [job] job monitor thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,436 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,451 | INFO     | [payload] control thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,595 | INFO     | [data] copytool_in thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,704 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:06,810 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,087 | INFO     | [data] copytool_out thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,111 | INFO     | [job] control thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,426 | INFO     | [job] validate thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,430 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:25:04] 2025-11-28 15:24:07,647 | INFO     | [payload] failed_post thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:07,671 | INFO     | [payload] validate_post thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:08,470 | INFO     | [job] queue monitor thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:09,090 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 10:25:04] 2025-11-28 15:24:34,621 | INFO     | PID=641333 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 10:25:04] 2025-11-28 15:24:34,621 | INFO     | .. there are 18 such processes running
[2025-11-28 10:25:04] 2025-11-28 15:24:34,621 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 10:25:04] 2025-11-28 15:24:34,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 10:25:04] 2025-11-28 15:24:34,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 10:25:04] 2025-11-28 15:24:58,102 | INFO     | [monitor] cgroup control has ended
[2025-11-28 10:25:04] 2025-11-28 15:24:58,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377251456832)>', '<ExcThread(monitor, started 140376308446976)>']
[2025-11-28 10:25:04] 2025-11-28 15:24:58,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 10:25:04] 2025-11-28 15:24:58,781 | INFO     | [monitor] control thread has ended
[2025-11-28 10:25:04] 2025-11-28 15:25:03,601 | INFO     | all workflow threads have been joined
[2025-11-28 10:25:04] 2025-11-28 15:25:03,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 10:25:04] 2025-11-28 15:25:03,604 | INFO     | traces error code: 0
[2025-11-28 10:25:04] 2025-11-28 15:25:03,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 10:25:04] 2025-11-28 15:25:03,858 [wrapper] ==== pilot stdout END ====
[2025-11-28 10:25:04] 2025-11-28 15:25:03,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 10:25:04] 2025-11-28 15:25:03,882 [wrapper] pilotpid: 641333
[2025-11-28 10:25:04] 2025-11-28 15:25:03,885 [wrapper] Pilot exit status: 0
[2025-11-28 10:25:04] 2025-11-28 15:25:03,899 [wrapper] pandaids: 6898988818
[2025-11-28 10:25:04] 2025-11-28 15:25:04,007 [wrapper] cleanup supervisor_pilot 3080355 641334
[2025-11-28 10:25:04] 2025-11-28 15:25:04,023 [wrapper] Test setup, not cleaning
[2025-11-28 10:25:04] 2025-11-28 15:25:04,133 [wrapper] apfmon messages muted
[2025-11-28 10:25:04] 2025-11-28 15:25:04,145 [wrapper] ==== wrapper stdout END ====
[2025-11-28 10:25:04] 2025-11-28 15:25:04,148 [wrapper] ==== wrapper stderr END ====
[2025-11-28 10:25:04]  *** Error codes and diagnostics ***
[2025-11-28 10:25:04]     "exeErrorCode": 0,
[2025-11-28 10:25:04]     "exeErrorDiag": "",
[2025-11-28 10:25:04]     "pilotErrorCode": 0,
[2025-11-28 10:25:04]     "pilotErrorDiag": "",
[2025-11-28 10:25:04]  *** Listing of results directory ***
[2025-11-28 10:25:04] total 1330248
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-28 10:25:04] -rwx------. 1 boincer umatlas     36292 Nov 26 20:28 runpilot2-wrapper.sh
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 20:30 queuedata.json
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas       100 Nov 27 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 10:25:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 16:56 run_atlas
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas       105 Nov 27 16:56 job.xml
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas 410291992 Nov 27 16:56 EVNT.47483658._002773.pool.root.1
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 16:56 start_atlas.sh
[2025-11-28 10:25:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 16:56 shared
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 16:56 input.tar.gz
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas         0 Nov 27 16:56 boinc_lockfile
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas      2788 Nov 27 16:56 pandaJob.out
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas        57 Nov 27 16:56 setup.sh.local
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas    991540 Nov 27 16:57 agis_schedconf.cvmfs.json
[2025-11-28 10:25:04] drwx------. 5 boincer umatlas      4096 Nov 27 16:57 pilot3
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas       533 Nov 28 10:13 boinc_task_state.xml
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas      6948 Nov 28 10:21 init_data.xml
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas 927199249 Nov 28 10:23 HITS.47556161._007552.pool.root.1
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas        95 Nov 28 10:23 pilot_heartbeat.json
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas      1063 Nov 28 10:23 memory_monitor_summary.json
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas   1516240 Nov 28 10:23 agis_ddmendpoints.agis.ALL.json
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas   2163469 Nov 28 10:23 log.47556161._007552.job.log.tgz.1
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas      8578 Nov 28 10:24 heartbeat.json
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 10:24 boinc_mmap_file
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas        29 Nov 28 10:24 wrapper_checkpoint.txt
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas      4824 Nov 28 10:25 pilotlog.txt
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas   8219580 Nov 28 10:25 log.47556161._007552.job.log.1
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas       353 Nov 28 10:25 output.list
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas       620 Nov 28 10:25 runtime_log
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas  10403840 Nov 28 10:25 result.tar.gz
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 10:25 runtime_log.err
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas       660 Nov 28 10:25 67wNDmQzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPaNKDmaATYfm.diag
[2025-11-28 10:25:04] -rw-r--r--. 1 boincer umatlas     13510 Nov 28 10:25 stderr.txt
[2025-11-28 10:25:04] HITS file was successfully produced:
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas 927199249 Nov 28 10:23 shared/HITS.pool.root.1
[2025-11-28 10:25:04]  *** Contents of shared directory: ***
[2025-11-28 10:25:04] total 1316912
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas 410291992 Nov 27 16:56 ATLAS.root_0
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 16:56 start_atlas.sh
[2025-11-28 10:25:04] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 16:56 input.tar.gz
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas 927199249 Nov 28 10:23 HITS.pool.root.1
[2025-11-28 10:25:04] -rw-------. 1 boincer umatlas  10403840 Nov 28 10:25 result.tar.gz
10:25:05 (637468): run_atlas exited; CPU time 214908.164075
10:25:05 (637468): called boinc_finish(0)

</stderr_txt>
]]>

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