Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:04:18 (1565814): wrapper (7.7.26015): starting
14:04:18 (1565814): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:04:18] Arguments: --nthreads 8
[2025-11-27 14:04:18] Threads: 8
[2025-11-27 14:04:18] Checking for CVMFS
[2025-11-27 14:04:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:04:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:04:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:04:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:04:20] 2.13.3.0 14106 31837 301056 153379 2 920 35131560 40960001 58298 16776704 0 402787939 99.751 264149571 47239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 14:04:20] CVMFS is ok
[2025-11-27 14:04:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:04:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:04:20] Further information can be found at the LHC@home message board.
[2025-11-27 14:04:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:04:20] Checking for apptainer binary...
[2025-11-27 14:04:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:04:20] Running /usr/bin/apptainer --version
[2025-11-27 14:04:20] apptainer version 1.4.4-1.el9
[2025-11-27 14:04:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:04:21] c8-7-5.aglt2.org
[2025-11-27 14:04:21] apptainer works
[2025-11-27 14:04:21] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:04:21] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:04:21] Starting ATLAS job with PandaID=6899106275
[2025-11-27 14:04:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:49:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:49:21] 2025-11-28 03:48:05,510 | INFO     | monitor loop #1790: job 0:6899106275 is in state 'finished'
[2025-11-27 22:49:21] 2025-11-28 03:48:05,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:49:21] 2025-11-28 03:48:05,844 | INFO     | time since job start (31306s) is within the limit (172800.0s)
[2025-11-27 22:49:21] 2025-11-28 03:48:08,037 | INFO     | monitor loop #1791: job 0:6899106275 is in state 'finished'
[2025-11-27 22:49:21] 2025-11-28 03:48:08,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:49:21] 2025-11-28 03:48:08,934 | INFO     | PID=1599420 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:49:21] 2025-11-28 03:48:08,934 | INFO     | .. there are 98 such processes running
[2025-11-27 22:49:21] 2025-11-28 03:48:09,946 | INFO     | time since job start (31310s) is within the limit (172800.0s)
[2025-11-27 22:49:21] 2025-11-28 03:48:10,543 | INFO     | monitor loop #1792: job 0:6899106275 is in state 'finished'
[2025-11-27 22:49:21] 2025-11-28 03:48:10,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:49:21] 2025-11-28 03:48:11,965 | INFO     | time since job start (31312s) is within the limit (172800.0s)
[2025-11-27 22:49:21] 2025-11-28 03:48:13,050 | INFO     | monitor loop #1793: job 0:6899106275 is in state 'finished'
[2025-11-27 22:49:21] 2025-11-28 03:48:13,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:49:21] 2025-11-28 03:48:13,971 | INFO     | time since job start (31314s) is within the limit (172800.0s)
[2025-11-27 22:49:21] 2025-11-28 03:48:15,554 | INFO     | monitor loop #1794: job 0:6899106275 is in state 'finished'
[2025-11-27 22:49:21] 2025-11-28 03:48:15,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:49:21] 2025-11-28 03:48:15,978 | INFO     | time since job start (31316s) is within the limit (172800.0s)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,617 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:49:21] 2025-11-28 03:48:16,624 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3781.355390624999
[2025-11-27 22:49:21] 2025-11-28 03:48:16,686 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6899106275/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,687 | INFO     | extracted standard info from prmon json
[2025-11-27 22:49:21] 2025-11-28 03:48:16,687 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:49:21] 2025-11-28 03:48:16,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:49:21] 2025-11-28 03:48:16,691 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:49:21] 2025-11-28 03:48:16,692 | INFO     | sum of square deviations: 41132928170.95093
[2025-11-27 22:49:21] 2025-11-28 03:48:16,695 | INFO     | sum of deviations: 366485062493.77344
[2025-11-27 22:49:21] 2025-11-28 03:48:16,695 | INFO     | mean x: 1764286093.3431373
[2025-11-27 22:49:21] 2025-11-28 03:48:16,695 | INFO     | mean y: 2726365.1784313726
[2025-11-27 22:49:21] 2025-11-28 03:48:16,695 | INFO     | intersect: -15716662648.132532
[2025-11-27 22:49:21] 2025-11-28 03:48:16,695 | INFO     | chi2: 24.758904790951934
[2025-11-27 22:49:21] 2025-11-28 03:48:16,696 | INFO     | sum of square deviations: 39935248206.29707
[2025-11-27 22:49:21] 2025-11-28 03:48:16,750 | INFO     | sum of deviations: 531780592238.66486
[2025-11-27 22:49:21] 2025-11-28 03:48:16,750 | INFO     | mean x: 1764285940.861386
[2025-11-27 22:49:21] 2025-11-28 03:48:16,750 | INFO     | mean y: 2747408.023762376
[2025-11-27 22:49:21] 2025-11-28 03:48:16,751 | INFO     | intersect: -23490609079.032665
[2025-11-27 22:49:21] 2025-11-28 03:48:16,751 | INFO     | chi2: 21.18149538620108
[2025-11-27 22:49:21] 2025-11-28 03:48:16,751 | INFO     | current chi2=21.18149538620108 (change=14.448980821066876 %)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,751 | INFO     | right removable region: 504
[2025-11-27 22:49:21] 2025-11-28 03:48:16,751 | INFO     | sum of square deviations: 39934674806.29707
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | sum of deviations: 165873352758.05045
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | mean x: 1764286245.861386
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | mean y: 2751893.843564356
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | intersect: -7325417829.471578
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | chi2: 20.083670113674362
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | current chi2=20.083670113674362 (change=18.883043158621955 %)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,759 | INFO     | left removable region: 10
[2025-11-27 22:49:21] 2025-11-28 03:48:16,760 | INFO     | sum of square deviations: 37381558654.83546
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | sum of deviations: 194739175418.35297
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | mean x: 1764286215.402834
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | mean y: 2800909.319838057
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | intersect: -9188245562.603334
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | chi2: 12.309986062789067
[2025-11-27 22:49:21] 2025-11-28 03:48:16,763 | INFO     | current memory leak: 5.21 B/s (using 494 data points, chi2=12.31)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | could have reported an average CPU frequency of 3798 MHz (20 samples)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | ..............................
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . Timing measurements:
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . get job = 0 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . initial setup = 7 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . payload setup = 54 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . stage-in = 0 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . payload execution = 31095 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . stage-out = 9 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | . log creation = 2 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,764 | INFO     | ..............................
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | 
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | job summary report
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | --------------------------------------------------
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | PanDA job id: 6899106275
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | task id: 47556173
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | errors: (none)
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | pilot state: finished 
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | transexitcode: 0
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | exeerrorcode: 0
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | exeerrordiag: 
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | exitcode: 0
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | exitmsg: OK
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | cpuconsumptiontime: 132801 s
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | nevents: 1000
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | neventsw: 0
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | pid: 1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | pgrp: 1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:16,853 | INFO     | corecount: 8
[2025-11-27 22:49:21] 2025-11-28 03:48:16,854 | INFO     | event service: False
[2025-11-27 22:49:21] 2025-11-28 03:48:16,854 | INFO     | sizes: {0: 2284090, 1: 2284345, 12: 2284345, 23: 2284373, 34: 2284401, 44: 2284429, 53: 2284847, 55: 2284875, 31154: 2323637, 31156: 2323636, 31166: 2332686, 31167
[2025-11-27 22:49:21] 2025-11-28 03:48:16,854 | INFO     | --------------------------------------------------
[2025-11-27 22:49:21] 2025-11-28 03:48:16,854 | INFO     | 
[2025-11-27 22:49:21] 2025-11-28 03:48:16,854 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | job 6899106275 has completed (purged errors)
[2025-11-27 22:49:21] 2025-11-28 03:48:17,023 | INFO     | overall cleanup function is called
[2025-11-27 22:49:21] 2025-11-28 03:48:18,099 | INFO     | --- collectZombieJob: --- 10, [1626012]
[2025-11-27 22:49:21] 2025-11-28 03:48:18,099 | INFO     | zombie collector waiting for pid 1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:18,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:49:21] 2025-11-28 03:48:18,099 | INFO     | collected zombie processes
[2025-11-27 22:49:21] 2025-11-28 03:48:18,099 | INFO     | will attempt to kill all subprocesses of pid=1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:19,381 | INFO     | process IDs to be killed: [1626012] (in reverse order)
[2025-11-27 22:49:21] 2025-11-28 03:48:20,163 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:49:21] 2025-11-28 03:48:20,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:49:21] 2025-11-28 03:48:20,208 | INFO     | did not find any defunct processes belonging to 1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:20,288 | INFO     | did not find any defunct processes belonging to 1626012
[2025-11-27 22:49:21] 2025-11-28 03:48:20,360 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:49:21] 2025-11-28 03:48:20,360 | INFO     | ready for new job
[2025-11-27 22:49:21] 2025-11-28 03:48:20,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:49:21] 2025-11-28 03:48:20,362 | INFO     | ***************************************
[2025-11-27 22:49:21] 2025-11-28 03:48:20,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:49:21] 2025-11-28 03:48:20,362 | INFO     | ***************************************
[2025-11-27 22:49:21] 2025-11-28 03:48:20,362 | INFO     | 
[2025-11-27 22:49:21] 2025-11-28 03:48:20,372 | INFO     | architecture information:
[2025-11-27 22:49:21] 2025-11-28 03:48:20,376 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:49:21] 2025-11-28 03:48:20,420 | INFO     | cat /etc/os-release:
[2025-11-27 22:49:21] NAME="CentOS Linux"
[2025-11-27 22:49:21] VERSION="7 (Core)"
[2025-11-27 22:49:21] ID="centos"
[2025-11-27 22:49:21] ID_LIKE="rhel fedora"
[2025-11-27 22:49:21] VERSION_ID="7"
[2025-11-27 22:49:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:49:21] ANSI_COLOR="0;31"
[2025-11-27 22:49:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:49:21] HOME_URL="https://www.centos.org/"
[2025-11-27 22:49:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:49:21] 
[2025-11-27 22:49:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:49:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:49:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:49:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:49:21] 
[2025-11-27 22:49:21] 2025-11-28 03:48:20,420 | INFO     | ***************************************
[2025-11-27 22:49:21] 2025-11-28 03:48:20,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | INFO     | sufficient remaining disk space (162364653568 B)
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | INFO     | update_server=False
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:49:21] 2025-11-28 03:48:21,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:49:21] 2025-11-28 03:48:21,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:49:21] 2025-11-28 03:48:21,456 | INFO     | all data control threads have been joined
[2025-11-27 22:49:21] 2025-11-28 03:48:21,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:49:21] 2025-11-28 03:48:21,609 | INFO     | aborting loop
[2025-11-27 22:49:21] 2025-11-28 03:48:21,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:49:21] 2025-11-28 03:48:22,014 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,028 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,107 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,166 | INFO     | all payload control threads have been joined
[2025-11-27 22:49:21] 2025-11-28 03:48:22,351 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,463 | INFO     | [data] control thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,578 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,615 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,710 | INFO     | all job control threads have been joined
[2025-11-27 22:49:21] 2025-11-28 03:48:22,727 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:22,883 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:23,028 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:23,171 | INFO     | [payload] control thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:23,490 | INFO     | [job] validate thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:23,490 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:23,716 | INFO     | [job] control thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:25,020 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:49:21] 2025-11-28 03:48:51,181 | INFO     | PID=1599420 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:49:21] 2025-11-28 03:48:51,181 | INFO     | .. there are 98 such processes running
[2025-11-27 22:49:21] 2025-11-28 03:48:51,182 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:49:21] 2025-11-28 03:48:51,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:49:21] 2025-11-28 03:48:51,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:49:21] 2025-11-28 03:49:13,980 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:49:21] 2025-11-28 03:49:14,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868173068096)>', '<ExcThread(monitor, started 139867656795904)>']
[2025-11-27 22:49:21] 2025-11-28 03:49:15,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:49:21] 2025-11-28 03:49:15,388 | INFO     | [monitor] control thread has ended
[2025-11-27 22:49:21] 2025-11-28 03:49:19,478 | INFO     | all workflow threads have been joined
[2025-11-27 22:49:21] 2025-11-28 03:49:19,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:49:21] 2025-11-28 03:49:19,480 | INFO     | traces error code: 0
[2025-11-27 22:49:21] 2025-11-28 03:49:19,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:49:21] 2025-11-28 03:49:19,802 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:49:21] 2025-11-28 03:49:19,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:49:21] 2025-11-28 03:49:19,841 [wrapper] pilotpid: 1599420
[2025-11-27 22:49:21] 2025-11-28 03:49:19,864 [wrapper] Pilot exit status: 0
[2025-11-27 22:49:21] 2025-11-28 03:49:19,938 [wrapper] pandaids: 6899106275
[2025-11-27 22:49:21] 2025-11-28 03:49:20,198 [wrapper] cleanup supervisor_pilot 1870182 1599421
[2025-11-27 22:49:21] 2025-11-28 03:49:20,230 [wrapper] Test setup, not cleaning
[2025-11-27 22:49:21] 2025-11-28 03:49:20,282 [wrapper] apfmon messages muted
[2025-11-27 22:49:21] 2025-11-28 03:49:20,293 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:49:21] 2025-11-28 03:49:20,346 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:49:21]  *** Error codes and diagnostics ***
[2025-11-27 22:49:21]     "exeErrorCode": 0,
[2025-11-27 22:49:21]     "exeErrorDiag": "",
[2025-11-27 22:49:21]     "pilotErrorCode": 0,
[2025-11-27 22:49:21]     "pilotErrorDiag": "",
[2025-11-27 22:49:21]  *** Listing of results directory ***
[2025-11-27 22:49:21] total 1314772
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-27 22:49:21] -rwx------. 1 boincer umatlas     36292 Nov 26 20:28 runpilot2-wrapper.sh
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 20:30 queuedata.json
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas       100 Nov 27 14:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:49:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 14:04 run_atlas
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas       105 Nov 27 14:04 job.xml
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas 410361618 Nov 27 14:04 EVNT.47483658._003253.pool.root.1
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:04 start_atlas.sh
[2025-11-27 22:49:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 14:04 shared
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 14:04 input.tar.gz
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas         0 Nov 27 14:04 boinc_lockfile
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas      2788 Nov 27 14:04 pandaJob.out
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas        57 Nov 27 14:04 setup.sh.local
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas    991223 Nov 27 14:06 agis_schedconf.cvmfs.json
[2025-11-27 22:49:21] drwx------. 5 boincer umatlas      4096 Nov 27 14:06 pilot3
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:27 boinc_task_state.xml
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas 920886363 Nov 27 22:46 HITS.47556173._002097.pool.root.1
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 22:46 init_data.xml
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas      1052 Nov 27 22:47 memory_monitor_summary.json
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas   1759965 Nov 27 22:47 log.47556173._002097.job.log.tgz.1
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas      8592 Nov 27 22:48 heartbeat.json
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas        95 Nov 27 22:48 pilot_heartbeat.json
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas      4825 Nov 27 22:49 pilotlog.txt
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas   3821288 Nov 27 22:49 log.47556173._002097.job.log.1
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas       353 Nov 27 22:49 output.list
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:49 runtime_log
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas   5601280 Nov 27 22:49 result.tar.gz
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:49 wrapper_checkpoint.txt
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:49 boinc_mmap_file
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 22:49 runtime_log.err
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas       659 Nov 27 22:49 kk7LDmRzfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8QKKDmFOMfkn.diag
[2025-11-27 22:49:21] -rw-r--r--. 1 boincer umatlas     21895 Nov 27 22:49 stderr.txt
[2025-11-27 22:49:21] HITS file was successfully produced:
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas 920886363 Nov 27 22:46 shared/HITS.pool.root.1
[2025-11-27 22:49:21]  *** Contents of shared directory: ***
[2025-11-27 22:49:21] total 1306124
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas 410361618 Nov 27 14:04 ATLAS.root_0
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 14:04 start_atlas.sh
[2025-11-27 22:49:21] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 14:04 input.tar.gz
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas 920886363 Nov 27 22:46 HITS.pool.root.1
[2025-11-27 22:49:21] -rw-------. 1 boincer umatlas   5601280 Nov 27 22:49 result.tar.gz
22:49:23 (1565814): run_atlas exited; CPU time 133454.545345
22:49:23 (1565814): called boinc_finish(0)

</stderr_txt>
]]>

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