Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:18:37 (1086735): wrapper (7.7.26015): starting
11:18:37 (1086735): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:18:37] Arguments: --nthreads 8
[2025-11-27 11:18:37] Threads: 8
[2025-11-27 11:18:37] Checking for CVMFS
[2025-11-27 11:18:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:18:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:18:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:18:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:18:38] 2.13.2.0 7528 34580 148260 153373 3 244 39995432 40960001 21056 16776704 0 78259518 99.776 48187584 43200 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 11:18:38] CVMFS is ok
[2025-11-27 11:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:18:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:18:38] Further information can be found at the LHC@home message board.
[2025-11-27 11:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:18:38] Checking for apptainer binary...
[2025-11-27 11:18:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:18:38] Running /usr/bin/apptainer --version
[2025-11-27 11:18:38] apptainer version 1.4.4-1.el9
[2025-11-27 11:18:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:18:38] c-212-9.aglt2.org
[2025-11-27 11:18:38] apptainer works
[2025-11-27 11:18:38] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:18:38] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:18:38] Starting ATLAS job with PandaID=6899106187
[2025-11-27 11:18:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:08:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:08:23] 2025-11-28 02:07:34,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:08:23] 2025-11-28 02:07:35,245 | INFO     | time since job start (35317s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:37,183 | INFO     | monitor loop #2397: job 0:6899106187 is in state 'finished'
[2025-11-27 21:08:23] 2025-11-28 02:07:37,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:08:23] 2025-11-28 02:07:37,252 | INFO     | time since job start (35319s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:39,259 | INFO     | time since job start (35321s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:39,691 | INFO     | monitor loop #2398: job 0:6899106187 is in state 'finished'
[2025-11-27 21:08:23] 2025-11-28 02:07:39,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:08:23] 2025-11-28 02:07:41,288 | INFO     | time since job start (35323s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:42,196 | INFO     | monitor loop #2399: job 0:6899106187 is in state 'finished'
[2025-11-27 21:08:23] 2025-11-28 02:07:42,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:08:23] 2025-11-28 02:07:43,295 | INFO     | time since job start (35325s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,456 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:08:23] 2025-11-28 02:07:44,462 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2996.6526874999986
[2025-11-27 21:08:23] 2025-11-28 02:07:44,478 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6899106187/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,479 | INFO     | extracted standard info from prmon json
[2025-11-27 21:08:23] 2025-11-28 02:07:44,479 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:08:23] 2025-11-28 02:07:44,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:08:23] 2025-11-28 02:07:44,539 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:08:23] 2025-11-28 02:07:44,540 | INFO     | sum of square deviations: 59875285762.50018
[2025-11-27 21:08:23] 2025-11-28 02:07:44,588 | INFO     | sum of deviations: -179079616993.50024
[2025-11-27 21:08:23] 2025-11-28 02:07:44,589 | INFO     | mean x: 1764277981.3823528
[2025-11-27 21:08:23] 2025-11-28 02:07:44,589 | INFO     | mean y: 2797728.7352941176
[2025-11-27 21:08:23] 2025-11-28 02:07:44,589 | INFO     | intersect: 5279536221.9634
[2025-11-27 21:08:23] 2025-11-28 02:07:44,589 | INFO     | chi2: 19.02067708747777
[2025-11-27 21:08:23] 2025-11-28 02:07:44,590 | INFO     | sum of square deviations: 58334938006.07319
[2025-11-27 21:08:23] 2025-11-28 02:07:44,641 | INFO     | sum of deviations: 9343768520.760117
[2025-11-27 21:08:23] 2025-11-28 02:07:44,642 | INFO     | mean x: 1764277828.8900523
[2025-11-27 21:08:23] 2025-11-28 02:07:44,642 | INFO     | mean y: 2816379.694589878
[2025-11-27 21:08:23] 2025-11-28 02:07:44,642 | INFO     | intersect: -279775908.95653784
[2025-11-27 21:08:23] 2025-11-28 02:07:44,642 | INFO     | chi2: 15.444193871640262
[2025-11-27 21:08:23] 2025-11-28 02:07:44,643 | INFO     | current chi2=15.444193871640262 (change=18.803133029328805 %)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,643 | INFO     | right removable region: 572
[2025-11-27 21:08:23] 2025-11-28 02:07:44,662 | INFO     | sum of square deviations: 58334626906.07321
[2025-11-27 21:08:23] 2025-11-28 02:07:44,697 | INFO     | sum of deviations: -349611202025.0839
[2025-11-27 21:08:23] 2025-11-28 02:07:44,698 | INFO     | mean x: 1764278133.8900523
[2025-11-27 21:08:23] 2025-11-28 02:07:44,698 | INFO     | mean y: 2814584.12565445
[2025-11-27 21:08:23] 2025-11-28 02:07:44,698 | INFO     | intersect: 10576489806.031582
[2025-11-27 21:08:23] 2025-11-28 02:07:44,745 | INFO     | monitor loop #2400: job 0:6899106187 is in state 'finished'
[2025-11-27 21:08:23] 2025-11-28 02:07:44,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,749 | INFO     | chi2: 16.585034277861684
[2025-11-27 21:08:23] 2025-11-28 02:07:44,750 | INFO     | current chi2=16.585034277861684 (change=12.805237155409092 %)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,750 | INFO     | left removable region: 10
[2025-11-27 21:08:23] 2025-11-28 02:07:44,750 | INFO     | sum of square deviations: 55039210084.718895
[2025-11-27 21:08:23] 2025-11-28 02:07:44,787 | INFO     | sum of deviations: -147657070986.15253
[2025-11-27 21:08:23] 2025-11-28 02:07:44,787 | INFO     | mean x: 1764278103.3985765
[2025-11-27 21:08:23] 2025-11-28 02:07:44,787 | INFO     | mean y: 2840986.058718861
[2025-11-27 21:08:23] 2025-11-28 02:07:44,787 | INFO     | intersect: 4735978266.769179
[2025-11-27 21:08:23] 2025-11-28 02:07:44,788 | INFO     | chi2: 12.026333672339355
[2025-11-27 21:08:23] 2025-11-28 02:07:44,788 | INFO     | current memory leak: -2.68 B/s (using 562 data points, chi2=12.03)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,789 | INFO     | could have reported an average CPU frequency of 3026 MHz (23 samples)
[2025-11-27 21:08:23] 2025-11-28 02:07:44,789 | INFO     | ..............................
[2025-11-27 21:08:23] 2025-11-28 02:07:44,805 | INFO     | . Timing measurements:
[2025-11-27 21:08:23] 2025-11-28 02:07:44,805 | INFO     | . get job = 0 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,806 | INFO     | . initial setup = 3 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,806 | INFO     | . payload setup = 12 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,806 | INFO     | . stage-in = 0 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,806 | INFO     | . payload execution = 35256 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,806 | INFO     | . stage-out = 7 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,809 | INFO     | . log creation = 1 s
[2025-11-27 21:08:23] 2025-11-28 02:07:44,809 | INFO     | ..............................
[2025-11-27 21:08:23] 2025-11-28 02:07:45,376 | INFO     | time since job start (35327s) is within the limit (172800.0s)
[2025-11-27 21:08:23] 2025-11-28 02:07:45,378 | INFO     | 
[2025-11-27 21:08:23] 2025-11-28 02:07:45,378 | INFO     | job summary report
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | --------------------------------------------------
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | PanDA job id: 6899106187
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | task id: 47556173
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | errors: (none)
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | pilot state: finished 
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | transexitcode: 0
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | exeerrorcode: 0
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | exeerrordiag: 
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | exitcode: 0
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | exitmsg: OK
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | cpuconsumptiontime: 207994 s
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | nevents: 1000
[2025-11-27 21:08:23] 2025-11-28 02:07:45,379 | INFO     | neventsw: 0
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | pid: 1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | pgrp: 1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | corecount: 8
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | event service: False
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | sizes: {0: 2283489, 1: 2284345, 10: 2284607, 12: 2284635, 35269: 2324594, 35277: 2333616, 35278: 2333800, 35303: 2334046}
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | --------------------------------------------------
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | 
[2025-11-27 21:08:23] 2025-11-28 02:07:45,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:08:23] 2025-11-28 02:07:45,630 | INFO     | job 6899106187 has completed (purged errors)
[2025-11-27 21:08:23] 2025-11-28 02:07:45,630 | INFO     | overall cleanup function is called
[2025-11-27 21:08:23] 2025-11-28 02:07:46,903 | INFO     | --- collectZombieJob: --- 10, [1105363]
[2025-11-27 21:08:23] 2025-11-28 02:07:46,903 | INFO     | zombie collector waiting for pid 1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:46,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:08:23] 2025-11-28 02:07:46,904 | INFO     | collected zombie processes
[2025-11-27 21:08:23] 2025-11-28 02:07:46,904 | INFO     | will attempt to kill all subprocesses of pid=1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:48,173 | INFO     | process IDs to be killed: [1105363] (in reverse order)
[2025-11-27 21:08:23] 2025-11-28 02:07:48,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:08:23] 2025-11-28 02:07:48,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:08:23] 2025-11-28 02:07:48,468 | INFO     | did not find any defunct processes belonging to 1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:48,522 | INFO     | did not find any defunct processes belonging to 1105363
[2025-11-27 21:08:23] 2025-11-28 02:07:48,526 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:08:23] 2025-11-28 02:07:48,526 | INFO     | ready for new job
[2025-11-27 21:08:23] 2025-11-28 02:07:48,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:08:23] 2025-11-28 02:07:48,530 | INFO     | ***************************************
[2025-11-27 21:08:23] 2025-11-28 02:07:48,530 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:08:23] 2025-11-28 02:07:48,530 | INFO     | ***************************************
[2025-11-27 21:08:23] 2025-11-28 02:07:48,572 | INFO     | 
[2025-11-27 21:08:23] 2025-11-28 02:07:48,622 | INFO     | architecture information:
[2025-11-27 21:08:23] 2025-11-28 02:07:48,634 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:08:23] 2025-11-28 02:07:48,762 | INFO     | cat /etc/os-release:
[2025-11-27 21:08:23] NAME="CentOS Linux"
[2025-11-27 21:08:23] VERSION="7 (Core)"
[2025-11-27 21:08:23] ID="centos"
[2025-11-27 21:08:23] ID_LIKE="rhel fedora"
[2025-11-27 21:08:23] VERSION_ID="7"
[2025-11-27 21:08:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:08:23] ANSI_COLOR="0;31"
[2025-11-27 21:08:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:08:23] HOME_URL="https://www.centos.org/"
[2025-11-27 21:08:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:08:23] 
[2025-11-27 21:08:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:08:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:08:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:08:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:08:23] 
[2025-11-27 21:08:23] 2025-11-28 02:07:48,762 | INFO     | ***************************************
[2025-11-27 21:08:23] 2025-11-28 02:07:49,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 21:08:23] 2025-11-28 02:07:49,451 | INFO     | sufficient remaining disk space (119117185024 B)
[2025-11-27 21:08:23] 2025-11-28 02:07:49,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:08:23] 2025-11-28 02:07:49,452 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:08:23] 2025-11-28 02:07:49,452 | INFO     | update_server=False
[2025-11-27 21:08:23] 2025-11-28 02:07:49,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:08:23] 2025-11-28 02:07:49,821 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 21:08:23] 2025-11-28 02:07:49,829 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 21:08:23] 2025-11-28 02:07:49,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:08:23] 2025-11-28 02:07:49,831 | INFO     | will abort loop
[2025-11-27 21:08:23] 2025-11-28 02:07:50,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:08:23] 2025-11-28 02:07:50,227 | INFO     | all data control threads have been joined
[2025-11-27 21:08:23] 2025-11-28 02:07:50,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:08:23] 2025-11-28 02:07:50,458 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:50,501 | INFO     | all job control threads have been joined
[2025-11-27 21:08:23] 2025-11-28 02:07:50,542 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:50,610 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:50,839 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:50,859 | INFO     | all payload control threads have been joined
[2025-11-27 21:08:23] 2025-11-28 02:07:51,084 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,235 | INFO     | [data] control thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,244 | INFO     | [job] validate thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,407 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,492 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,507 | INFO     | [job] control thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,765 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,836 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:51,883 | INFO     | [payload] control thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:52,164 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:52,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:08:23] 2025-11-28 02:07:56,864 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:08:23] 2025-11-28 02:07:57,781 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:08:23] 2025-11-28 02:07:59,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066765727552)>', '<ExcThread(monitor, started 140066114492160)>']
[2025-11-27 21:08:23] 2025-11-28 02:08:04,702 | INFO     | all workflow threads have been joined
[2025-11-27 21:08:23] 2025-11-28 02:08:04,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:08:23] 2025-11-28 02:08:04,703 | INFO     | traces error code: 0
[2025-11-27 21:08:23] 2025-11-28 02:08:04,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:08:23] 2025-11-28 02:08:19,694 | INFO     | PID=1092187 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:08:23] 2025-11-28 02:08:19,703 | INFO     | .. there are 20 such processes running
[2025-11-27 21:08:23] 2025-11-28 02:08:19,711 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:08:23] 2025-11-28 02:08:19,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:08:23] 2025-11-28 02:08:19,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:08:23] 2025-11-28 02:08:19,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:08:23] 2025-11-28 02:08:19,712 | INFO     | [monitor] control thread has ended
[2025-11-27 21:08:23] 2025-11-28 02:08:21,948 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:08:23] 2025-11-28 02:08:21,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:08:23] 2025-11-28 02:08:21,997 [wrapper] pilotpid: 1092187
[2025-11-27 21:08:23] 2025-11-28 02:08:22,016 [wrapper] Pilot exit status: 0
[2025-11-27 21:08:23] 2025-11-28 02:08:22,099 [wrapper] pandaids: 6899106187
[2025-11-27 21:08:23] 2025-11-28 02:08:22,282 [wrapper] cleanup supervisor_pilot  552365 1092188
[2025-11-27 21:08:23] 2025-11-28 02:08:22,316 [wrapper] Test setup, not cleaning
[2025-11-27 21:08:23] 2025-11-28 02:08:22,358 [wrapper] apfmon messages muted
[2025-11-27 21:08:23] 2025-11-28 02:08:22,396 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:08:23] 2025-11-28 02:08:22,423 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:08:23]  *** Error codes and diagnostics ***
[2025-11-27 21:08:23]     "exeErrorCode": 0,
[2025-11-27 21:08:23]     "exeErrorDiag": "",
[2025-11-27 21:08:23]     "pilotErrorCode": 0,
[2025-11-27 21:08:23]     "pilotErrorDiag": "",
[2025-11-27 21:08:23]  *** Listing of results directory ***
[2025-11-27 21:08:23] total 1316348
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-27 21:08:23] -rwx------. 1 boincer umatlas     36292 Nov 26 20:28 runpilot2-wrapper.sh
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 20:30 queuedata.json
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas       100 Nov 27 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:08:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 11:18 run_atlas
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas       105 Nov 27 11:18 job.xml
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas 409377168 Nov 27 11:18 EVNT.47483658._003248.pool.root.1
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:18 start_atlas.sh
[2025-11-27 21:08:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 11:18 shared
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas    590110 Nov 27 11:18 input.tar.gz
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas         0 Nov 27 11:18 boinc_lockfile
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas      2788 Nov 27 11:18 pandaJob.out
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas        57 Nov 27 11:18 setup.sh.local
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas    991572 Nov 27 11:18 agis_schedconf.cvmfs.json
[2025-11-27 21:08:23] drwx------. 5 boincer umatlas      4096 Nov 27 11:18 pilot3
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:37 boinc_task_state.xml
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 21:02 init_data.xml
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas 921336602 Nov 27 21:05 HITS.47556173._002048.pool.root.1
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas      1051 Nov 27 21:07 memory_monitor_summary.json
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas   1855987 Nov 27 21:07 log.47556173._002048.job.log.tgz.1
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas      7926 Nov 27 21:07 heartbeat.json
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas        95 Nov 27 21:08 pilot_heartbeat.json
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas       823 Nov 27 21:08 pilotlog.txt
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:08 boinc_mmap_file
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:08 wrapper_checkpoint.txt
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas   4798843 Nov 27 21:08 log.47556173._002048.job.log.1
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas       353 Nov 27 21:08 output.list
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:08 runtime_log
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas   6676480 Nov 27 21:08 result.tar.gz
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas       659 Nov 27 21:08 SBpLDmRzfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwQKKDmjd1DKm.diag
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 21:08 runtime_log.err
[2025-11-27 21:08:23] -rw-r--r--. 1 boincer umatlas     21764 Nov 27 21:08 stderr.txt
[2025-11-27 21:08:23] HITS file was successfully produced:
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas 921336602 Nov 27 21:05 shared/HITS.pool.root.1
[2025-11-27 21:08:23]  *** Contents of shared directory: ***
[2025-11-27 21:08:23] total 1306652
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas 409377168 Nov 27 11:18 ATLAS.root_0
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:18 start_atlas.sh
[2025-11-27 21:08:23] -rw-r--r--. 2 boincer umatlas    590110 Nov 27 11:18 input.tar.gz
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas 921336602 Nov 27 21:05 HITS.pool.root.1
[2025-11-27 21:08:23] -rw-------. 1 boincer umatlas   6676480 Nov 27 21:08 result.tar.gz
21:08:24 (1086735): run_atlas exited; CPU time 208046.130768
21:08:24 (1086735): called boinc_finish(0)

</stderr_txt>
]]>

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