Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:40:05 (4112454): wrapper (7.7.26015): starting
11:40:05 (4112454): wrapper: running run_atlas (--nthreads 10)
[2025-11-27 11:40:05] Arguments: --nthreads 10
[2025-11-27 11:40:05] Threads: 10
[2025-11-27 11:40:05] Checking for CVMFS
[2025-11-27 11:40:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:40:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:40:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:40:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:40:27] 2.13.2.0 6869 38318 175636 153373 3 413 30788293 40960001 20997 16776704 0 76971663 99.776 43345187 42535 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 11:40:27] CVMFS is ok
[2025-11-27 11:40:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:40:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:40:27] Further information can be found at the LHC@home message board.
[2025-11-27 11:40:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:40:27] Checking for apptainer binary...
[2025-11-27 11:40:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:40:27] Running /usr/bin/apptainer --version
[2025-11-27 11:40:27] apptainer version 1.4.4-1.el9
[2025-11-27 11:40:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:40:27] c-212-13.aglt2.org
[2025-11-27 11:40:27] apptainer works
[2025-11-27 11:40:27] Set ATHENA_PROC_NUMBER=10
[2025-11-27 11:40:27] Set ATHENA_CORE_NUMBER=10
[2025-11-27 11:40:27] Starting ATLAS job with PandaID=6898988829
[2025-11-27 11:40:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:37:48]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:37:48] 2025-11-28 10:36:29,024 | INFO     | time since job start (64543s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:31,110 | INFO     | PID=4118248 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-28 05:37:48] 2025-11-28 10:36:31,110 | INFO     | .. there are 20 such processes running
[2025-11-28 05:37:48] 2025-11-28 10:36:31,394 | INFO     | monitor loop #3912: job 0:6898988829 is in state 'finished'
[2025-11-28 05:37:48] 2025-11-28 10:36:31,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:37:48] 2025-11-28 10:36:32,111 | INFO     | time since job start (64546s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:32,112 | INFO     | 64548s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 05:37:48] 2025-11-28 10:36:33,899 | INFO     | monitor loop #3913: job 0:6898988829 is in state 'finished'
[2025-11-28 05:37:48] 2025-11-28 10:36:33,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:37:48] 2025-11-28 10:36:34,118 | INFO     | time since job start (64548s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:36,125 | INFO     | time since job start (64550s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:36,404 | INFO     | monitor loop #3914: job 0:6898988829 is in state 'finished'
[2025-11-28 05:37:48] 2025-11-28 10:36:36,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:37:48] 2025-11-28 10:36:38,132 | INFO     | time since job start (64552s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:38,910 | INFO     | monitor loop #3915: job 0:6898988829 is in state 'finished'
[2025-11-28 05:37:48] 2025-11-28 10:36:38,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,143 | INFO     | time since job start (64554s) is within the limit (172800.0s)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,282 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:37:48] 2025-11-28 10:36:40,335 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2965.6980416666665
[2025-11-28 05:37:48] 2025-11-28 10:36:40,351 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898988829/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,352 | INFO     | extracted standard info from prmon json
[2025-11-28 05:37:48] 2025-11-28 10:36:40,352 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:37:48] 2025-11-28 10:36:40,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:37:48] 2025-11-28 10:36:40,368 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:37:48] 2025-11-28 10:36:40,371 | INFO     | sum of square deviations: 367250361470.9214
[2025-11-28 05:37:48] 2025-11-28 10:36:40,438 | INFO     | sum of deviations: 714856714864.2405
[2025-11-28 05:37:48] 2025-11-28 10:36:40,438 | INFO     | mean x: 1764293924.6833649
[2025-11-28 05:37:48] 2025-11-28 10:36:40,439 | INFO     | mean y: 3126456.2126654065
[2025-11-28 05:37:48] 2025-11-28 10:36:40,439 | INFO     | intersect: -3431090338.0271683
[2025-11-28 05:37:48] 2025-11-28 10:36:40,440 | INFO     | chi2: 34.51396636043559
[2025-11-28 05:37:48] 2025-11-28 10:36:40,445 | INFO     | sum of square deviations: 362069192094.4787
[2025-11-28 05:37:48] 2025-11-28 10:36:40,492 | INFO     | sum of deviations: 1096720963243.3306
[2025-11-28 05:37:48] 2025-11-28 10:36:40,493 | INFO     | mean x: 1764293772.1937323
[2025-11-28 05:37:48] 2025-11-28 10:36:40,493 | INFO     | mean y: 3137692.807217474
[2025-11-28 05:37:48] 2025-11-28 10:36:40,493 | INFO     | intersect: -5340973343.239214
[2025-11-28 05:37:48] 2025-11-28 10:36:40,498 | INFO     | chi2: 30.900590673729976
[2025-11-28 05:37:48] 2025-11-28 10:36:40,498 | INFO     | current chi2=30.900590673729976 (change=10.469314505816218 %)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,498 | INFO     | right removable region: 1052
[2025-11-28 05:37:48] 2025-11-28 10:36:40,499 | INFO     | sum of square deviations: 362067782994.47784
[2025-11-28 05:37:48] 2025-11-28 10:36:40,519 | INFO     | sum of deviations: 318323746747.25714
[2025-11-28 05:37:48] 2025-11-28 10:36:40,519 | INFO     | mean x: 1764294077.1937323
[2025-11-28 05:37:48] 2025-11-28 10:36:40,519 | INFO     | mean y: 3138121.0085470085
[2025-11-28 05:37:48] 2025-11-28 10:36:40,519 | INFO     | intersect: -1547998785.9304194
[2025-11-28 05:37:48] 2025-11-28 10:36:40,520 | INFO     | chi2: 31.605385390818235
[2025-11-28 05:37:48] 2025-11-28 10:36:40,520 | INFO     | current chi2=31.605385390818235 (change=8.427257937388353 %)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,520 | INFO     | left removable region: 10
[2025-11-28 05:37:48] 2025-11-28 10:36:40,521 | INFO     | sum of square deviations: 350839811569.9127
[2025-11-28 05:37:48] 2025-11-28 10:36:40,541 | INFO     | sum of deviations: 532605620739.9385
[2025-11-28 05:37:48] 2025-11-28 10:36:40,542 | INFO     | mean x: 1764294046.715931
[2025-11-28 05:37:48] 2025-11-28 10:36:40,542 | INFO     | mean y: 3158834.0335892513
[2025-11-28 05:37:48] 2025-11-28 10:36:40,542 | INFO     | intersect: -2675194348.6173067
[2025-11-28 05:37:48] 2025-11-28 10:36:40,543 | INFO     | chi2: 26.289451518187715
[2025-11-28 05:37:48] 2025-11-28 10:36:40,543 | INFO     | current memory leak: 1.52 B/s (using 1042 data points, chi2=26.29)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,544 | INFO     | could have reported an average CPU frequency of 2985 MHz (39 samples)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | ..............................
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . Timing measurements:
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . get job = 0 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . initial setup = 2 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . payload setup = 10 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . stage-in = 0 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . payload execution = 64494 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . stage-out = 5 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | . log creation = 1 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,545 | INFO     | ..............................
[2025-11-28 05:37:48] 2025-11-28 10:36:40,620 | INFO     | 
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | job summary report
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | --------------------------------------------------
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | PanDA job id: 6898988829
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | task id: 47556173
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | errors: (none)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | pilot state: finished 
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | transexitcode: 0
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | exeerrorcode: 0
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | exeerrordiag: 
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | exitcode: 0
[2025-11-28 05:37:48] 2025-11-28 10:36:40,621 | INFO     | exitmsg: OK
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | cpuconsumptiontime: 218479 s
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | nevents: 1000
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | neventsw: 0
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | pid: 4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | pgrp: 4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | corecount: 10
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | event service: False
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | sizes: {0: 2284090, 1: 2284174, 2: 2284373, 8: 2284635, 13: 2284663, 64506: 2339697, 64513: 2348691, 64515: 2348747, 64535: 2348993}
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | --------------------------------------------------
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | 
[2025-11-28 05:37:48] 2025-11-28 10:36:40,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-28 05:37:48] 2025-11-28 10:36:40,682 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:37:48] 2025-11-28 10:36:40,685 | INFO     | job 6898988829 has completed (purged errors)
[2025-11-28 05:37:48] 2025-11-28 10:36:40,685 | INFO     | overall cleanup function is called
[2025-11-28 05:37:48] 2025-11-28 10:36:41,777 | INFO     | --- collectZombieJob: --- 10, [4124629]
[2025-11-28 05:37:48] 2025-11-28 10:36:41,778 | INFO     | zombie collector waiting for pid 4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:41,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:37:48] 2025-11-28 10:36:41,778 | INFO     | collected zombie processes
[2025-11-28 05:37:48] 2025-11-28 10:36:41,778 | INFO     | will attempt to kill all subprocesses of pid=4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:43,147 | INFO     | process IDs to be killed: [4124629] (in reverse order)
[2025-11-28 05:37:48] 2025-11-28 10:36:43,407 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:37:48] 2025-11-28 10:36:43,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:37:48] 2025-11-28 10:36:43,422 | INFO     | did not find any defunct processes belonging to 4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:43,449 | INFO     | did not find any defunct processes belonging to 4124629
[2025-11-28 05:37:48] 2025-11-28 10:36:43,458 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:37:48] 2025-11-28 10:36:43,459 | INFO     | ready for new job
[2025-11-28 05:37:48] 2025-11-28 10:36:43,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:37:48] 2025-11-28 10:36:43,472 | INFO     | ***************************************
[2025-11-28 05:37:48] 2025-11-28 10:36:43,472 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:37:48] 2025-11-28 10:36:43,472 | INFO     | ***************************************
[2025-11-28 05:37:48] 2025-11-28 10:36:43,472 | INFO     | 
[2025-11-28 05:37:48] 2025-11-28 10:36:43,497 | INFO     | architecture information:
[2025-11-28 05:37:48] 2025-11-28 10:36:43,500 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:37:48] 2025-11-28 10:36:43,564 | INFO     | cat /etc/os-release:
[2025-11-28 05:37:48] NAME="CentOS Linux"
[2025-11-28 05:37:48] VERSION="7 (Core)"
[2025-11-28 05:37:48] ID="centos"
[2025-11-28 05:37:48] ID_LIKE="rhel fedora"
[2025-11-28 05:37:48] VERSION_ID="7"
[2025-11-28 05:37:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:37:48] ANSI_COLOR="0;31"
[2025-11-28 05:37:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:37:48] HOME_URL="https://www.centos.org/"
[2025-11-28 05:37:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:37:48] 
[2025-11-28 05:37:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:37:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:37:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:37:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:37:48] 
[2025-11-28 05:37:48] 2025-11-28 10:36:43,565 | INFO     | ***************************************
[2025-11-28 05:37:48] 2025-11-28 10:36:44,070 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-28 05:37:48] 2025-11-28 10:36:44,110 | INFO     | sufficient remaining disk space (119541858304 B)
[2025-11-28 05:37:48] 2025-11-28 10:36:44,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:37:48] 2025-11-28 10:36:44,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:37:48] 2025-11-28 10:36:44,111 | INFO     | update_server=False
[2025-11-28 05:37:48] 2025-11-28 10:36:44,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:37:48] 2025-11-28 10:36:44,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:37:48] 2025-11-28 10:36:44,376 | INFO     | all payload control threads have been joined
[2025-11-28 05:37:48] 2025-11-28 10:36:44,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:37:48] 2025-11-28 10:36:44,933 | INFO     | aborting loop
[2025-11-28 05:37:48] 2025-11-28 10:36:44,940 | INFO     | all data control threads have been joined
[2025-11-28 05:37:48] 2025-11-28 10:36:45,066 | INFO     | all job control threads have been joined
[2025-11-28 05:37:48] 2025-11-28 10:36:45,116 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:45,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:37:48] 2025-11-28 10:36:45,358 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:45,381 | INFO     | [payload] control thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:45,569 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:45,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:37:48] 2025-11-28 10:36:45,938 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:45,947 | INFO     | [data] control thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,072 | INFO     | [job] control thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,257 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,475 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,511 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,525 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,530 | INFO     | [job] validate thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,607 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:46,641 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:36:49,140 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:37:48] 2025-11-28 10:37:14,889 | INFO     | PID=4118248 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:37:48] 2025-11-28 10:37:14,890 | INFO     | .. there are 20 such processes running
[2025-11-28 05:37:48] 2025-11-28 10:37:14,890 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:37:48] 2025-11-28 10:37:14,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:37:48] 2025-11-28 10:37:14,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:37:48] 2025-11-28 10:37:40,562 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:37:48] 2025-11-28 10:37:42,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673218266944)>', '<ExcThread(monitor, started 140672568903424)>']
[2025-11-28 05:37:48] 2025-11-28 10:37:42,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:37:48] 2025-11-28 10:37:42,060 | INFO     | [monitor] control thread has ended
[2025-11-28 05:37:48] 2025-11-28 10:37:47,071 | INFO     | all workflow threads have been joined
[2025-11-28 05:37:48] 2025-11-28 10:37:47,072 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:37:48] 2025-11-28 10:37:47,072 | INFO     | traces error code: 0
[2025-11-28 05:37:48] 2025-11-28 10:37:47,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:37:48] 2025-11-28 10:37:47,331 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:37:48] 2025-11-28 10:37:47,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:37:48] 2025-11-28 10:37:47,378 [wrapper] pilotpid: 4118248
[2025-11-28 05:37:48] 2025-11-28 10:37:47,401 [wrapper] Pilot exit status: 0
[2025-11-28 05:37:48] 2025-11-28 10:37:47,505 [wrapper] pandaids: 6898988829
[2025-11-28 05:37:48] 2025-11-28 10:37:47,762 [wrapper] cleanup supervisor_pilot 2401317 4118249
[2025-11-28 05:37:48] 2025-11-28 10:37:47,777 [wrapper] Test setup, not cleaning
[2025-11-28 05:37:48] 2025-11-28 10:37:47,792 [wrapper] apfmon messages muted
[2025-11-28 05:37:48] 2025-11-28 10:37:47,810 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:37:48] 2025-11-28 10:37:47,833 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:37:48]  *** Error codes and diagnostics ***
[2025-11-28 05:37:48]     "exeErrorCode": 0,
[2025-11-28 05:37:48]     "exeErrorDiag": "",
[2025-11-28 05:37:48]     "pilotErrorCode": 0,
[2025-11-28 05:37:48]     "pilotErrorDiag": "",
[2025-11-28 05:37:48]  *** Listing of results directory ***
[2025-11-28 05:37:48] total 1319040
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-28 05:37:48] -rwx------. 1 boincer umatlas     36292 Nov 26 20:28 runpilot2-wrapper.sh
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 20:30 queuedata.json
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas       100 Nov 27 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:37:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 11:40 run_atlas
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas       105 Nov 27 11:40 job.xml
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas 410440315 Nov 27 11:40 EVNT.47483658._003244.pool.root.1
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:40 start_atlas.sh
[2025-11-28 05:37:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 11:40 shared
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 11:40 input.tar.gz
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas         0 Nov 27 11:40 boinc_lockfile
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas      2788 Nov 27 11:40 pandaJob.out
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas        57 Nov 27 11:40 setup.sh.local
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas    991572 Nov 27 11:40 agis_schedconf.cvmfs.json
[2025-11-28 05:37:48] drwx------. 5 boincer umatlas      4096 Nov 27 11:40 pilot3
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas       533 Nov 28 04:37 boinc_task_state.xml
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas 915133852 Nov 28 05:35 HITS.47556173._002002.pool.root.1
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas      1058 Nov 28 05:36 memory_monitor_summary.json
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas   1516240 Nov 28 05:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas   2412002 Nov 28 05:36 log.47556173._002002.job.log.tgz.1
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas      6948 Nov 28 05:36 init_data.xml
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas      8588 Nov 28 05:36 heartbeat.json
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas        95 Nov 28 05:37 pilot_heartbeat.json
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas      4825 Nov 28 05:37 pilotlog.txt
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 05:37 boinc_mmap_file
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas   8186184 Nov 28 05:37 log.47556173._002002.job.log.1
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas        29 Nov 28 05:37 wrapper_checkpoint.txt
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas       353 Nov 28 05:37 output.list
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas       620 Nov 28 05:37 runtime_log
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas  10618880 Nov 28 05:37 result.tar.gz
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas      9345 Nov 28 05:37 runtime_log.err
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas       661 Nov 28 05:37 jwJLDmRzfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeQKKDmJ75s8m.diag
[2025-11-28 05:37:48] -rw-r--r--. 1 boincer umatlas     21877 Nov 28 05:37 stderr.txt
[2025-11-28 05:37:48] HITS file was successfully produced:
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas 915133852 Nov 28 05:35 shared/HITS.pool.root.1
[2025-11-28 05:37:48]  *** Contents of shared directory: ***
[2025-11-28 05:37:48] total 1305488
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas 410440315 Nov 27 11:40 ATLAS.root_0
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:40 start_atlas.sh
[2025-11-28 05:37:48] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 11:40 input.tar.gz
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas 915133852 Nov 28 05:35 HITS.pool.root.1
[2025-11-28 05:37:48] -rw-------. 1 boincer umatlas  10618880 Nov 28 05:37 result.tar.gz
05:37:49 (4112454): run_atlas exited; CPU time 218907.019741
05:37:49 (4112454): called boinc_finish(0)

</stderr_txt>
]]>

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