Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:47:46 (17576): wrapper (7.7.26015): starting
10:47:46 (17576): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:47:46] Arguments: --nthreads 8
[2025-11-27 10:47:46] Threads: 8
[2025-11-27 10:47:46] Checking for CVMFS
[2025-11-27 10:47:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:47:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:47:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:47:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:47:47] 2.11.2.0 3838 144104 135348 153371 2 82 13610389 18432000 1885 130560 0 119025606 99.988 5129247 27249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:47:47] CVMFS is ok
[2025-11-27 10:47:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:47:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:47:47] Further information can be found at the LHC@home message board.
[2025-11-27 10:47:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:47:47] Checking for apptainer binary...
[2025-11-27 10:47:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:47:47] Running /usr/bin/apptainer --version
[2025-11-27 10:47:47] apptainer version 1.3.2-1.el7
[2025-11-27 10:47:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:47:47] c-206-4.aglt2.org
[2025-11-27 10:47:47] apptainer works
[2025-11-27 10:47:47] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:47:47] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:47:48] Starting ATLAS job with PandaID=6899423944
[2025-11-27 10:47:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:56:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:56:59] 2025-11-28 10:56:14,879 | INFO     | time since job start (68895s) is within the limit (172800.0s)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,611 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 05:56:59] 2025-11-28 10:56:15,615 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-11-28 05:56:59] 2025-11-28 10:56:15,618 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6899423944/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,618 | INFO     | extracted standard info from prmon json
[2025-11-28 05:56:59] 2025-11-28 10:56:15,618 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:56:59] 2025-11-28 10:56:15,619 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:56:59] 2025-11-28 10:56:15,634 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:56:59] 2025-11-28 10:56:15,635 | INFO     | sum of square deviations: 446228813728.22107
[2025-11-28 05:56:59] 2025-11-28 10:56:15,658 | INFO     | sum of deviations: 2301425471705.257
[2025-11-28 05:56:59] 2025-11-28 10:56:15,658 | INFO     | mean x: 1764292909.5730736
[2025-11-28 05:56:59] 2025-11-28 10:56:15,658 | INFO     | mean y: 3156920.784765279
[2025-11-28 05:56:59] 2025-11-28 10:56:15,658 | INFO     | intersect: -9096185203.082342
[2025-11-28 05:56:59] 2025-11-28 10:56:15,659 | INFO     | chi2: 5.620102530313364
[2025-11-28 05:56:59] 2025-11-28 10:56:15,660 | INFO     | sum of square deviations: 440326556206.572
[2025-11-28 05:56:59] 2025-11-28 10:56:15,683 | INFO     | sum of deviations: 2680522638026.437
[2025-11-28 05:56:59] 2025-11-28 10:56:15,683 | INFO     | mean x: 1764292757.0756228
[2025-11-28 05:56:59] 2025-11-28 10:56:15,683 | INFO     | mean y: 3166712.8772241995
[2025-11-28 05:56:59] 2025-11-28 10:56:15,683 | INFO     | intersect: -10737104589.834404
[2025-11-28 05:56:59] 2025-11-28 10:56:15,684 | INFO     | chi2: 2.8928542603428897
[2025-11-28 05:56:59] 2025-11-28 10:56:15,685 | INFO     | current chi2=2.8928542603428897 (change=48.52666397561984 %)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,686 | INFO     | sum of square deviations: 434476578734.9078
[2025-11-28 05:56:59] 2025-11-28 10:56:15,708 | INFO     | sum of deviations: 2776392885073.193
[2025-11-28 05:56:59] 2025-11-28 10:56:15,708 | INFO     | mean x: 1764292604.5781949
[2025-11-28 05:56:59] 2025-11-28 10:56:15,708 | INFO     | mean y: 3169207.5406613047
[2025-11-28 05:56:59] 2025-11-28 10:56:15,708 | INFO     | intersect: -11271016040.375433
[2025-11-28 05:56:59] 2025-11-28 10:56:15,709 | INFO     | chi2: 2.5556287744062596
[2025-11-28 05:56:59] 2025-11-28 10:56:15,709 | INFO     | current chi2=2.5556287744062596 (change=11.657188907147326 %)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,709 | INFO     | right removable region: 1118
[2025-11-28 05:56:59] 2025-11-28 10:56:15,710 | INFO     | sum of square deviations: 440326161536.57214
[2025-11-28 05:56:59] 2025-11-28 10:56:15,741 | INFO     | sum of deviations: 1958131248260.3123
[2025-11-28 05:56:59] 2025-11-28 10:56:15,741 | INFO     | mean x: 1764293062.0756228
[2025-11-28 05:56:59] 2025-11-28 10:56:15,741 | INFO     | mean y: 3165781.3727758005
[2025-11-28 05:56:59] 2025-11-28 10:56:15,741 | INFO     | intersect: -7842648702.789346
[2025-11-28 05:56:59] 2025-11-28 10:56:15,742 | INFO     | chi2: 3.389188739464208
[2025-11-28 05:56:59] 2025-11-28 10:56:15,742 | INFO     | current chi2=3.389188739464208 (change=39.69525073281475 %)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,743 | INFO     | sum of square deviations: 434476063529.51825
[2025-11-28 05:56:59] 2025-11-28 10:56:15,765 | INFO     | sum of deviations: 1857666309951.963
[2025-11-28 05:56:59] 2025-11-28 10:56:15,765 | INFO     | mean x: 1764293214.5746202
[2025-11-28 05:56:59] 2025-11-28 10:56:15,765 | INFO     | mean y: 3168399.9705093834
[2025-11-28 05:56:59] 2025-11-28 10:56:15,766 | INFO     | intersect: -7540326721.411364
[2025-11-28 05:56:59] 2025-11-28 10:56:15,766 | INFO     | chi2: 3.2915476903533225
[2025-11-28 05:56:59] 2025-11-28 10:56:15,767 | INFO     | current chi2=3.2915476903533225 (change=2.8809563767853597 %)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,767 | INFO     | left removable region: 20
[2025-11-28 05:56:59] 2025-11-28 10:56:15,768 | INFO     | sum of square deviations: 410471288226.62305
[2025-11-28 05:56:59] 2025-11-28 10:56:15,789 | INFO     | sum of deviations: 2188643485913.6064
[2025-11-28 05:56:59] 2025-11-28 10:56:15,789 | INFO     | mean x: 1764293184.081967
[2025-11-28 05:56:59] 2025-11-28 10:56:15,789 | INFO     | mean y: 3184521.6821493623
[2025-11-28 05:56:59] 2025-11-28 10:56:15,789 | INFO     | intersect: -9404072198.429468
[2025-11-28 05:56:59] 2025-11-28 10:56:15,790 | INFO     | chi2: 0.15095007710103678
[2025-11-28 05:56:59] 2025-11-28 10:56:15,790 | INFO     | current memory leak: 5.33 B/s (using 1098 data points, chi2=0.15)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,791 | INFO     | monitor loop #4929: job 0:6899423944 is in state 'finished'
[2025-11-28 05:56:59] 2025-11-28 10:56:15,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | could have reported an average CPU frequency of 2633 MHz (41 samples)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | ..............................
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . Timing measurements:
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . get job = 0 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . initial setup = 2 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . payload setup = 5 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . stage-in = 0 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . payload execution = 68859 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,792 | INFO     | . stage-out = 3 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,793 | INFO     | . log creation = 0 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,793 | INFO     | ..............................
[2025-11-28 05:56:59] 2025-11-28 10:56:15,872 | INFO     | 
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | job summary report
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | --------------------------------------------------
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | PanDA job id: 6899423944
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | task id: 47556173
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | errors: (none)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | pilot state: finished 
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | transexitcode: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | exeerrorcode: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:15,873 | INFO     | exeerrordiag: 
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | exitcode: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | exitmsg: OK
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | cpuconsumptiontime: 531919 s
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | nevents: 1000
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | neventsw: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | pid: 28086
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | pgrp: 28086
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | corecount: 8
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | event service: False
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | sizes: {0: 2284316, 4: 2284578, 11: 2284606, 68869: 2340695, 68873: 2349689, 68877: 2349745, 68882: 2350215}
[2025-11-28 05:56:59] 2025-11-28 10:56:15,874 | INFO     | --------------------------------------------------
[2025-11-28 05:56:59] 2025-11-28 10:56:15,875 | INFO     | 
[2025-11-28 05:56:59] 2025-11-28 10:56:15,875 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 05:56:59] 2025-11-28 10:56:15,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,892 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,892 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:56:59] 2025-11-28 10:56:15,892 | INFO     | job 6899423944 has completed (purged errors)
[2025-11-28 05:56:59] 2025-11-28 10:56:15,892 | INFO     | overall cleanup function is called
[2025-11-28 05:56:59] 2025-11-28 10:56:16,904 | INFO     | --- collectZombieJob: --- 10, [28086]
[2025-11-28 05:56:59] 2025-11-28 10:56:16,904 | INFO     | zombie collector waiting for pid 28086
[2025-11-28 05:56:59] 2025-11-28 10:56:16,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:56:59] 2025-11-28 10:56:16,904 | INFO     | collected zombie processes
[2025-11-28 05:56:59] 2025-11-28 10:56:16,904 | INFO     | will attempt to kill all subprocesses of pid=28086
[2025-11-28 05:56:59] 2025-11-28 10:56:17,085 | INFO     | process IDs to be killed: [28086] (in reverse order)
[2025-11-28 05:56:59] 2025-11-28 10:56:17,148 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:56:59] 2025-11-28 10:56:17,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:56:59] 2025-11-28 10:56:17,154 | INFO     | did not find any defunct processes belonging to 28086
[2025-11-28 05:56:59] 2025-11-28 10:56:17,159 | INFO     | did not find any defunct processes belonging to 28086
[2025-11-28 05:56:59] 2025-11-28 10:56:17,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:56:59] 2025-11-28 10:56:17,161 | INFO     | ready for new job
[2025-11-28 05:56:59] 2025-11-28 10:56:17,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:56:59] 2025-11-28 10:56:17,166 | INFO     | ***************************************
[2025-11-28 05:56:59] 2025-11-28 10:56:17,166 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:56:59] 2025-11-28 10:56:17,166 | INFO     | ***************************************
[2025-11-28 05:56:59] 2025-11-28 10:56:17,167 | INFO     | 
[2025-11-28 05:56:59] 2025-11-28 10:56:17,168 | INFO     | architecture information:
[2025-11-28 05:56:59] 2025-11-28 10:56:17,168 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:56:59] 2025-11-28 10:56:17,184 | INFO     | cat /etc/os-release:
[2025-11-28 05:56:59] NAME="CentOS Linux"
[2025-11-28 05:56:59] VERSION="7 (Core)"
[2025-11-28 05:56:59] ID="centos"
[2025-11-28 05:56:59] ID_LIKE="rhel fedora"
[2025-11-28 05:56:59] VERSION_ID="7"
[2025-11-28 05:56:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:56:59] ANSI_COLOR="0;31"
[2025-11-28 05:56:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:56:59] HOME_URL="https://www.centos.org/"
[2025-11-28 05:56:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:56:59] 
[2025-11-28 05:56:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:56:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:56:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:56:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:56:59] 
[2025-11-28 05:56:59] 2025-11-28 10:56:17,184 | INFO     | ***************************************
[2025-11-28 05:56:59] 2025-11-28 10:56:17,687 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 05:56:59] 2025-11-28 10:56:17,705 | INFO     | sufficient remaining disk space (26541555712 B)
[2025-11-28 05:56:59] 2025-11-28 10:56:17,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | INFO     | update_server=False
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:56:59] 2025-11-28 10:56:17,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:56:59] 2025-11-28 10:56:17,707 | INFO     | aborting loop
[2025-11-28 05:56:59] 2025-11-28 10:56:18,062 | INFO     | all data control threads have been joined
[2025-11-28 05:56:59] 2025-11-28 10:56:18,308 | INFO     | all job control threads have been joined
[2025-11-28 05:56:59] 2025-11-28 10:56:18,707 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:18,711 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:18,713 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:18,850 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,067 | INFO     | [data] control thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,154 | INFO     | all payload control threads have been joined
[2025-11-28 05:56:59] 2025-11-28 10:56:19,313 | INFO     | [job] control thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,511 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,512 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,519 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,644 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,690 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,697 | INFO     | [job] validate thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:19,713 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:20,020 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:20,159 | INFO     | [payload] control thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:21,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:56:59] 2025-11-28 10:56:25,154 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:56:59] 2025-11-28 10:56:48,105 | INFO     | PID=21549 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:56:59] 2025-11-28 10:56:48,105 | INFO     | .. there are 3 such processes running
[2025-11-28 05:56:59] 2025-11-28 10:56:48,106 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:56:59] 2025-11-28 10:56:48,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:56:59] 2025-11-28 10:56:48,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:56:59] 2025-11-28 10:56:53,254 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:56:59] 2025-11-28 10:56:54,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740273178432)>', '<ExcThread(monitor, started 139739696977664)>']
[2025-11-28 05:56:59] 2025-11-28 10:56:55,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:56:59] 2025-11-28 10:56:55,141 | INFO     | [monitor] control thread has ended
[2025-11-28 05:56:59] 2025-11-28 10:56:59,284 | INFO     | all workflow threads have been joined
[2025-11-28 05:56:59] 2025-11-28 10:56:59,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:56:59] 2025-11-28 10:56:59,285 | INFO     | traces error code: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:59,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:56:59] 2025-11-28 10:56:59,401 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:56:59] 2025-11-28 10:56:59,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:56:59] 2025-11-28 10:56:59,405 [wrapper] pilotpid: 21549
[2025-11-28 05:56:59] 2025-11-28 10:56:59,408 [wrapper] Pilot exit status: 0
[2025-11-28 05:56:59] 2025-11-28 10:56:59,416 [wrapper] pandaids: 6899423944
[2025-11-28 05:56:59] 2025-11-28 10:56:59,445 [wrapper] cleanup supervisor_pilot 20755 21550
[2025-11-28 05:56:59] 2025-11-28 10:56:59,448 [wrapper] Test setup, not cleaning
[2025-11-28 05:56:59] 2025-11-28 10:56:59,450 [wrapper] apfmon messages muted
[2025-11-28 05:56:59] 2025-11-28 10:56:59,452 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:56:59] 2025-11-28 10:56:59,454 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:56:59]  *** Error codes and diagnostics ***
[2025-11-28 05:56:59]     "exeErrorCode": 0,
[2025-11-28 05:56:59]     "exeErrorDiag": "",
[2025-11-28 05:56:59]     "pilotErrorCode": 0,
[2025-11-28 05:56:59]     "pilotErrorDiag": "",
[2025-11-28 05:56:59]  *** Listing of results directory ***
[2025-11-28 05:56:59] total 1324372
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-28 05:56:59] -rwx------ 1 boincer umatlas     36292 Nov 26 20:26 runpilot2-wrapper.sh
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 20:27 queuedata.json
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas       100 Nov 27 10:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:56:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 10:47 run_atlas
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas       105 Nov 27 10:47 job.xml
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas 411432848 Nov 27 10:47 EVNT.47483658._003287.pool.root.1
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:47 start_atlas.sh
[2025-11-28 05:56:59] drwxrwx--x 2 boincer umatlas      4096 Nov 27 10:47 shared
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 10:47 input.tar.gz
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas         0 Nov 27 10:47 boinc_lockfile
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 10:47 pandaJob.out
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas        57 Nov 27 10:47 setup.sh.local
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas    991572 Nov 27 10:47 agis_schedconf.cvmfs.json
[2025-11-28 05:56:59] drwx------ 5 boincer umatlas      4096 Nov 27 10:47 pilot3
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas       533 Nov 28 05:46 boinc_task_state.xml
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 05:55 init_data.xml
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas 917068837 Nov 28 05:55 HITS.47556173._002432.pool.root.1
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas      1067 Nov 28 05:55 memory_monitor_summary.json
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas   1516240 Nov 28 05:56 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas   2314744 Nov 28 05:56 log.47556173._002432.job.log.tgz.1
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas      8660 Nov 28 05:56 heartbeat.json
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 05:56 boinc_mmap_file
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas        29 Nov 28 05:56 wrapper_checkpoint.txt
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas        95 Nov 28 05:56 pilot_heartbeat.json
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas      4821 Nov 28 05:56 pilotlog.txt
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas   9551221 Nov 28 05:56 log.47556173._002432.job.log.1
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas       353 Nov 28 05:56 output.list
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas       620 Nov 28 05:56 runtime_log
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas  11888640 Nov 28 05:56 result.tar.gz
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas       667 Nov 28 05:56 xxHMDmexfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5OKKDmY130Eo.diag
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 05:56 runtime_log.err
[2025-11-28 05:56:59] -rw-r--r-- 1 boincer umatlas     21293 Nov 28 05:56 stderr.txt
[2025-11-28 05:56:59] HITS file was successfully produced:
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas 917068837 Nov 28 05:55 shared/HITS.pool.root.1
[2025-11-28 05:56:59]  *** Contents of shared directory: ***
[2025-11-28 05:56:59] total 1309580
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas 411432848 Nov 27 10:47 ATLAS.root_0
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:47 start_atlas.sh
[2025-11-28 05:56:59] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 10:47 input.tar.gz
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas 917068837 Nov 28 05:55 HITS.pool.root.1
[2025-11-28 05:56:59] -rw------- 1 boincer umatlas  11888640 Nov 28 05:56 result.tar.gz
05:57:01 (17576): run_atlas exited; CPU time 531040.551550
05:57:01 (17576): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN