Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:28:19 (9173): wrapper (7.7.26015): starting
10:28:19 (9173): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 10:28:19] Arguments: --nthreads 12
[2025-11-27 10:28:19] Threads: 12
[2025-11-27 10:28:19] Checking for CVMFS
[2025-11-27 10:28:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:28:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:28:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:28:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:28:19] 2.11.2.0 723 119249 93776 153371 0 82 11277017 20275200 1 130560 0 51229170 99.905 6896734 33775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:28:19] CVMFS is ok
[2025-11-27 10:28:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:28:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:28:19] Further information can be found at the LHC@home message board.
[2025-11-27 10:28:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:28:19] Checking for apptainer binary...
[2025-11-27 10:28:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:28:19] Running /usr/bin/apptainer --version
[2025-11-27 10:28:19] apptainer version 1.3.2-1.el7
[2025-11-27 10:28:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:28:21] c-205-1.aglt2.org
[2025-11-27 10:28:21] apptainer works
[2025-11-27 10:28:21] Set ATHENA_PROC_NUMBER=12
[2025-11-27 10:28:21] Set ATHENA_CORE_NUMBER=12
[2025-11-27 10:28:21] Starting ATLAS job with PandaID=6898378285
[2025-11-27 10:28:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:53:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:53:27] 2025-11-27 22:52:31,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,011 | INFO     | time since job start (26637s) is within the limit (172800.0s)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,860 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:53:27] 2025-11-27 22:52:33,864 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-11-27 17:53:27] 2025-11-27 22:52:33,867 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378285/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,867 | INFO     | extracted standard info from prmon json
[2025-11-27 17:53:27] 2025-11-27 22:52:33,868 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:53:27] 2025-11-27 22:52:33,868 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:53:27] 2025-11-27 22:52:33,874 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:53:27] 2025-11-27 22:52:33,875 | INFO     | sum of square deviations: 25700267262.557503
[2025-11-27 17:53:27] 2025-11-27 22:52:33,879 | INFO     | sum of deviations: 411968954617.72974
[2025-11-27 17:53:27] 2025-11-27 22:52:33,879 | INFO     | mean x: 1764270613.6215596
[2025-11-27 17:53:27] 2025-11-27 22:52:33,879 | INFO     | mean y: 3442280.9862385322
[2025-11-27 17:53:27] 2025-11-27 22:52:33,879 | INFO     | intersect: -28277381141.241714
[2025-11-27 17:53:27] 2025-11-27 22:52:33,880 | INFO     | chi2: 5.315045558368102
[2025-11-27 17:53:27] 2025-11-27 22:52:33,880 | INFO     | sum of square deviations: 24826201922.48263
[2025-11-27 17:53:27] 2025-11-27 22:52:33,884 | INFO     | sum of deviations: 565179266789.297
[2025-11-27 17:53:27] 2025-11-27 22:52:33,884 | INFO     | mean x: 1764270461.1229699
[2025-11-27 17:53:27] 2025-11-27 22:52:33,885 | INFO     | mean y: 3468980.7679814384
[2025-11-27 17:53:27] 2025-11-27 22:52:33,885 | INFO     | intersect: -40160914147.5467
[2025-11-27 17:53:27] 2025-11-27 22:52:33,885 | INFO     | chi2: 2.7115028128355227
[2025-11-27 17:53:27] 2025-11-27 22:52:33,885 | INFO     | current chi2=2.7115028128355227 (change=48.98439189168408 %)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,886 | INFO     | sum of square deviations: 23972183469.906075
[2025-11-27 17:53:27] 2025-11-27 22:52:33,890 | INFO     | sum of deviations: 613349874303.047
[2025-11-27 17:53:27] 2025-11-27 22:52:33,890 | INFO     | mean x: 1764270308.6244133
[2025-11-27 17:53:27] 2025-11-27 22:52:33,890 | INFO     | mean y: 3477542.187793427
[2025-11-27 17:53:27] 2025-11-27 22:52:33,890 | INFO     | intersect: -45136965062.46001
[2025-11-27 17:53:27] 2025-11-27 22:52:33,890 | INFO     | chi2: 2.2310627517974893
[2025-11-27 17:53:27] 2025-11-27 22:52:33,891 | INFO     | current chi2=2.2310627517974893 (change=17.718589807975114 %)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,891 | INFO     | right removable region: 425
[2025-11-27 17:53:27] 2025-11-27 22:52:33,891 | INFO     | sum of square deviations: 24826169592.482643
[2025-11-27 17:53:27] 2025-11-27 22:52:33,895 | INFO     | sum of deviations: 279589495798.0908
[2025-11-27 17:53:27] 2025-11-27 22:52:33,895 | INFO     | mean x: 1764270766.1229699
[2025-11-27 17:53:27] 2025-11-27 22:52:33,895 | INFO     | mean y: 3465295.9605568447
[2025-11-27 17:53:27] 2025-11-27 22:52:33,895 | INFO     | intersect: -19865551231.703667
[2025-11-27 17:53:27] 2025-11-27 22:52:33,896 | INFO     | chi2: 3.225823557289978
[2025-11-27 17:53:27] 2025-11-27 22:52:33,896 | INFO     | current chi2=3.225823557289978 (change=39.30769695452218 %)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,896 | INFO     | sum of square deviations: 23972118809.906094
[2025-11-27 17:53:27] 2025-11-27 22:52:33,900 | INFO     | sum of deviations: 244543548023.74173
[2025-11-27 17:53:27] 2025-11-27 22:52:33,900 | INFO     | mean x: 1764270918.6244133
[2025-11-27 17:53:27] 2025-11-27 22:52:33,900 | INFO     | mean y: 3471548.46713615
[2025-11-27 17:53:27] 2025-11-27 22:52:33,901 | INFO     | intersect: -17994147833.31375
[2025-11-27 17:53:27] 2025-11-27 22:52:33,901 | INFO     | chi2: 3.1691619444473873
[2025-11-27 17:53:27] 2025-11-27 22:52:33,901 | INFO     | current chi2=3.1691619444473873 (change=1.7565006838189279 %)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,901 | INFO     | left removable region: 20
[2025-11-27 17:53:27] 2025-11-27 22:52:33,902 | INFO     | sum of square deviations: 20598891062.577877
[2025-11-27 17:53:27] 2025-11-27 22:52:33,905 | INFO     | sum of deviations: 401340154346.5113
[2025-11-27 17:53:27] 2025-11-27 22:52:33,906 | INFO     | mean x: 1764270888.125926
[2025-11-27 17:53:27] 2025-11-27 22:52:33,906 | INFO     | mean y: 3515952.637037037
[2025-11-27 17:53:27] 2025-11-27 22:52:33,906 | INFO     | intersect: -34370798101.37898
[2025-11-27 17:53:27] 2025-11-27 22:52:33,906 | INFO     | chi2: 0.04942912150082378
[2025-11-27 17:53:27] 2025-11-27 22:52:33,906 | INFO     | current memory leak: 19.48 B/s (using 405 data points, chi2=0.05)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | could have reported an average CPU frequency of 2408 MHz (18 samples)
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | ..............................
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | . Timing measurements:
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | . get job = 0 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | . initial setup = 2 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | . payload setup = 8 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,907 | INFO     | . stage-in = 0 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,908 | INFO     | . payload execution = 26595 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,908 | INFO     | . stage-out = 3 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,908 | INFO     | . log creation = 0 s
[2025-11-27 17:53:27] 2025-11-27 22:52:33,908 | INFO     | ..............................
[2025-11-27 17:53:27] 2025-11-27 22:52:34,442 | INFO     | 
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | job summary report
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | --------------------------------------------------
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | PanDA job id: 6898378285
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | task id: 47556161
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | errors: (none)
[2025-11-27 17:53:27] 2025-11-27 22:52:34,443 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | pilot state: finished 
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | transexitcode: 0
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | exeerrorcode: 0
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | exeerrordiag: 
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | exitcode: 0
[2025-11-27 17:53:27] 2025-11-27 22:52:34,444 | INFO     | exitmsg: OK
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | cpuconsumptiontime: 304630 s
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | nevents: 1000
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | neventsw: 0
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | pid: 19347
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | pgrp: 19347
[2025-11-27 17:53:27] 2025-11-27 22:52:34,445 | INFO     | corecount: 12
[2025-11-27 17:53:27] 2025-11-27 22:52:34,446 | INFO     | event service: False
[2025-11-27 17:53:27] 2025-11-27 22:52:34,446 | INFO     | sizes: {0: 2284316, 5: 2284578, 11: 2284634, 26606: 2322178, 26611: 2331172, 26615: 2331228, 26621: 2331602}
[2025-11-27 17:53:27] 2025-11-27 22:52:34,446 | INFO     | --------------------------------------------------
[2025-11-27 17:53:27] 2025-11-27 22:52:34,446 | INFO     | 
[2025-11-27 17:53:27] 2025-11-27 22:52:34,446 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 17:53:27] 2025-11-27 22:52:34,517 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,518 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,518 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,518 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:53:27] 2025-11-27 22:52:34,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:53:27] 2025-11-27 22:52:34,521 | INFO     | job 6898378285 has completed (purged errors)
[2025-11-27 17:53:27] 2025-11-27 22:52:34,521 | INFO     | overall cleanup function is called
[2025-11-27 17:53:27] 2025-11-27 22:52:35,538 | INFO     | --- collectZombieJob: --- 10, [19347]
[2025-11-27 17:53:27] 2025-11-27 22:52:35,538 | INFO     | zombie collector waiting for pid 19347
[2025-11-27 17:53:27] 2025-11-27 22:52:35,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:53:27] 2025-11-27 22:52:35,539 | INFO     | collected zombie processes
[2025-11-27 17:53:27] 2025-11-27 22:52:35,539 | INFO     | will attempt to kill all subprocesses of pid=19347
[2025-11-27 17:53:27] 2025-11-27 22:52:35,630 | INFO     | process IDs to be killed: [19347] (in reverse order)
[2025-11-27 17:53:27] 2025-11-27 22:52:35,684 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:53:27] 2025-11-27 22:52:35,684 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:53:27] 2025-11-27 22:52:35,687 | INFO     | did not find any defunct processes belonging to 19347
[2025-11-27 17:53:27] 2025-11-27 22:52:35,690 | INFO     | did not find any defunct processes belonging to 19347
[2025-11-27 17:53:27] 2025-11-27 22:52:35,691 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:53:27] 2025-11-27 22:52:35,692 | INFO     | ready for new job
[2025-11-27 17:53:27] 2025-11-27 22:52:35,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:53:27] 2025-11-27 22:52:35,694 | INFO     | ***************************************
[2025-11-27 17:53:27] 2025-11-27 22:52:35,694 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:53:27] 2025-11-27 22:52:35,694 | INFO     | ***************************************
[2025-11-27 17:53:27] 2025-11-27 22:52:35,694 | INFO     | 
[2025-11-27 17:53:27] 2025-11-27 22:52:35,694 | INFO     | architecture information:
[2025-11-27 17:53:27] 2025-11-27 22:52:35,695 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:53:27] 2025-11-27 22:52:35,710 | INFO     | cat /etc/os-release:
[2025-11-27 17:53:27] NAME="CentOS Linux"
[2025-11-27 17:53:27] VERSION="7 (Core)"
[2025-11-27 17:53:27] ID="centos"
[2025-11-27 17:53:27] ID_LIKE="rhel fedora"
[2025-11-27 17:53:27] VERSION_ID="7"
[2025-11-27 17:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:53:27] ANSI_COLOR="0;31"
[2025-11-27 17:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:53:27] HOME_URL="https://www.centos.org/"
[2025-11-27 17:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:53:27] 
[2025-11-27 17:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:53:27] 
[2025-11-27 17:53:27] 2025-11-27 22:52:35,711 | INFO     | ***************************************
[2025-11-27 17:53:27] 2025-11-27 22:52:36,214 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 17:53:27] 2025-11-27 22:52:36,230 | INFO     | sufficient remaining disk space (28362932224 B)
[2025-11-27 17:53:27] 2025-11-27 22:52:36,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:53:27] 2025-11-27 22:52:36,230 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:53:27] 2025-11-27 22:52:36,230 | INFO     | update_server=False
[2025-11-27 17:53:27] 2025-11-27 22:52:36,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:53:27] 2025-11-27 22:52:36,641 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:53:27] 2025-11-27 22:52:36,641 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:53:27] 2025-11-27 22:52:36,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:53:27] 2025-11-27 22:52:36,642 | INFO     | will abort loop
[2025-11-27 17:53:27] 2025-11-27 22:52:36,879 | INFO     | all payload control threads have been joined
[2025-11-27 17:53:27] 2025-11-27 22:52:37,046 | INFO     | all data control threads have been joined
[2025-11-27 17:53:27] 2025-11-27 22:52:37,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:53:27] 2025-11-27 22:52:37,236 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,283 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,507 | INFO     | all job control threads have been joined
[2025-11-27 17:53:27] 2025-11-27 22:52:37,647 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,710 | INFO     | [job] validate thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,863 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,884 | INFO     | [payload] control thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,912 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:37,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:38,052 | INFO     | [data] control thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:38,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:53:27] 2025-11-27 22:52:38,138 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:38,405 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:38,513 | INFO     | [job] control thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:38,531 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:39,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:53:27] 2025-11-27 22:52:39,073 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:40,006 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:52:42,088 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:53:27] 2025-11-27 22:53:06,195 | INFO     | PID=12855 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 17:53:27] 2025-11-27 22:53:06,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:53:27] 2025-11-27 22:53:06,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:53:27] 2025-11-27 22:53:06,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:53:27] 2025-11-27 22:53:19,793 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:53:27] 2025-11-27 22:53:21,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524010977088)>', '<ExcThread(monitor, started 140523713050368)>']
[2025-11-27 17:53:27] 2025-11-27 22:53:22,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:53:27] 2025-11-27 22:53:22,273 | INFO     | [monitor] control thread has ended
[2025-11-27 17:53:27] 2025-11-27 22:53:26,672 | INFO     | all workflow threads have been joined
[2025-11-27 17:53:27] 2025-11-27 22:53:26,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:53:27] 2025-11-27 22:53:26,672 | INFO     | traces error code: 0
[2025-11-27 17:53:27] 2025-11-27 22:53:26,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:53:27] 2025-11-27 22:53:26,769 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:53:27] 2025-11-27 22:53:26,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:53:27] 2025-11-27 22:53:26,777 [wrapper] pilotpid: 12855
[2025-11-27 17:53:27] 2025-11-27 22:53:26,781 [wrapper] Pilot exit status: 0
[2025-11-27 17:53:27] 2025-11-27 22:53:26,795 [wrapper] pandaids: 6898378285
[2025-11-27 17:53:27] 2025-11-27 22:53:26,843 [wrapper] cleanup supervisor_pilot 18819 12856
[2025-11-27 17:53:27] 2025-11-27 22:53:26,847 [wrapper] Test setup, not cleaning
[2025-11-27 17:53:27] 2025-11-27 22:53:26,851 [wrapper] apfmon messages muted
[2025-11-27 17:53:27] 2025-11-27 22:53:26,856 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:53:27] 2025-11-27 22:53:26,859 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:53:27]  *** Error codes and diagnostics ***
[2025-11-27 17:53:27]     "exeErrorCode": 0,
[2025-11-27 17:53:27]     "exeErrorDiag": "",
[2025-11-27 17:53:27]     "pilotErrorCode": 0,
[2025-11-27 17:53:27]     "pilotErrorDiag": "",
[2025-11-27 17:53:27]  *** Listing of results directory ***
[2025-11-27 17:53:27] total 1320180
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:35 queuedata.json
[2025-11-27 17:53:27] -rwx------ 1 boincer umatlas     36292 Nov 26 11:35 runpilot2-wrapper.sh
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas       100 Nov 27 10:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:53:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 10:28 run_atlas
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas       105 Nov 27 10:28 job.xml
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas 410364609 Nov 27 10:28 EVNT.47483658._002600.pool.root.1
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:28 start_atlas.sh
[2025-11-27 17:53:27] drwxrwx--x 2 boincer umatlas      4096 Nov 27 10:28 shared
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 10:28 input.tar.gz
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas         0 Nov 27 10:28 boinc_lockfile
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 10:28 pandaJob.out
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas        57 Nov 27 10:28 setup.sh.local
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas    991572 Nov 27 10:28 agis_schedconf.cvmfs.json
[2025-11-27 17:53:27] drwx------ 5 boincer umatlas      4096 Nov 27 10:28 pilot3
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas       532 Nov 27 17:42 boinc_task_state.xml
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 17:48 init_data.xml
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas 925756803 Nov 27 17:51 HITS.47556161._005824.pool.root.1
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas      1064 Nov 27 17:52 memory_monitor_summary.json
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas   1516240 Nov 27 17:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas   2188743 Nov 27 17:52 log.47556161._005824.job.log.tgz.1
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas      8665 Nov 27 17:52 heartbeat.json
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas        95 Nov 27 17:53 pilot_heartbeat.json
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:53 boinc_mmap_file
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:53 wrapper_checkpoint.txt
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas      4932 Nov 27 17:53 pilotlog.txt
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas   3725170 Nov 27 17:53 log.47556161._005824.job.log.1
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas       353 Nov 27 17:53 output.list
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:53 runtime_log
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas   5928960 Nov 27 17:53 result.tar.gz
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas      9340 Nov 27 17:53 runtime_log.err
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas       669 Nov 27 17:53 KNeKDmnfXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX2JKDmd2EPjn.diag
[2025-11-27 17:53:27] -rw-r--r-- 1 boincer umatlas     21308 Nov 27 17:53 stderr.txt
[2025-11-27 17:53:27] HITS file was successfully produced:
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas 925756803 Nov 27 17:51 shared/HITS.pool.root.1
[2025-11-27 17:53:27]  *** Contents of shared directory: ***
[2025-11-27 17:53:27] total 1311200
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas 410364609 Nov 27 10:28 ATLAS.root_0
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:28 start_atlas.sh
[2025-11-27 17:53:27] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 10:28 input.tar.gz
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas 925756803 Nov 27 17:51 HITS.pool.root.1
[2025-11-27 17:53:27] -rw------- 1 boincer umatlas   5928960 Nov 27 17:53 result.tar.gz
17:53:28 (9173): run_atlas exited; CPU time 297611.273173
17:53:28 (9173): called boinc_finish(0)

</stderr_txt>
]]>

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