Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:14:27 (57126): wrapper (7.7.26015): starting
16:14:27 (57126): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 16:14:27] Arguments: --nthreads 3
[2025-11-27 16:14:27] Threads: 3
[2025-11-27 16:14:27] Checking for CVMFS
[2025-11-27 16:14:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:14:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:14:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:14:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:14:27] 2.9.2.0 3252557 455 69788 153371 3 13 36038588 36864001 0 130560 0 2979574 99.999 22472 13669 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 16:14:27] CVMFS is ok
[2025-11-27 16:14:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:14:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:14:27] Further information can be found at the LHC@home message board.
[2025-11-27 16:14:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:14:27] Checking for apptainer binary...
[2025-11-27 16:14:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:14:27] Running /usr/bin/apptainer --version
[2025-11-27 16:14:27] apptainer version 1.4.1-1.1
[2025-11-27 16:14:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:14:28] thA335
[2025-11-27 16:14:28] apptainer works
[2025-11-27 16:14:28] Set ATHENA_PROC_NUMBER=3
[2025-11-27 16:14:28] Set ATHENA_CORE_NUMBER=3
[2025-11-27 16:14:28] Starting ATLAS job with PandaID=6896764157
[2025-11-27 16:14:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:18:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:18:47] VERSION="7 (Core)"
[2025-11-27 16:18:47] ID="centos"
[2025-11-27 16:18:47] ID_LIKE="rhel fedora"
[2025-11-27 16:18:47] VERSION_ID="7"
[2025-11-27 16:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:18:47] ANSI_COLOR="0;31"
[2025-11-27 16:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:18:47] HOME_URL="https://www.centos.org/"
[2025-11-27 16:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:18:47] 
[2025-11-27 16:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:18:47] 
[2025-11-27 16:18:47] 2025-11-27 15:17:55,870 | INFO     | ***************************************
[2025-11-27 16:18:47] 2025-11-27 15:17:56,373 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 16:18:47] 2025-11-27 15:17:56,384 | INFO     | sufficient remaining disk space (825969606656 B)
[2025-11-27 16:18:47] 2025-11-27 15:17:56,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:18:47] 2025-11-27 15:17:56,385 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:18:47] 2025-11-27 15:17:56,385 | INFO     | update_server=False
[2025-11-27 16:18:47] 2025-11-27 15:17:56,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:18:47] 2025-11-27 15:17:56,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:18:47] 2025-11-27 15:17:56,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:18:47] 2025-11-27 15:17:56,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:18:47] 2025-11-27 15:17:56,498 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:18:47] 2025-11-27 15:17:56,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:18:47] 2025-11-27 15:17:56,498 | INFO     | will abort loop
[2025-11-27 16:18:47] 2025-11-27 15:17:56,736 | INFO     | all data control threads have been joined
[2025-11-27 16:18:47] 2025-11-27 15:17:57,062 | INFO     | all payload control threads have been joined
[2025-11-27 16:18:47] 2025-11-27 15:17:57,391 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:57,392 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:57,505 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:57,608 | INFO     | all job control threads have been joined
[2025-11-27 16:18:47] 2025-11-27 15:17:57,652 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:57,742 | INFO     | [data] control thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:57,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,069 | INFO     | [payload] control thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,207 | INFO     | [job] validate thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,255 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,286 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,304 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,343 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,391 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,614 | INFO     | [job] control thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:17:58,727 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:18:47] 2025-11-27 15:18:02,734 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:18:47] 2025-11-27 15:18:26,159 | INFO     | PID=60862 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:18:47] 2025-11-27 15:18:26,159 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:18:47] 2025-11-27 15:18:26,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:18:47] 2025-11-27 15:18:26,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:18:47] 2025-11-27 15:18:41,307 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:18:47] 2025-11-27 15:18:42,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442355513152)>', '<ExcThread(monitor, started 140441857021696)>']
[2025-11-27 16:18:47] 2025-11-27 15:18:43,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:18:47] 2025-11-27 15:18:43,251 | INFO     | [monitor] control thread has ended
[2025-11-27 16:18:47] 2025-11-27 15:18:47,626 | INFO     | all workflow threads have been joined
[2025-11-27 16:18:47] 2025-11-27 15:18:47,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:18:47] 2025-11-27 15:18:47,627 | INFO     | traces error code: 0
[2025-11-27 16:18:47] 2025-11-27 15:18:47,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:18:47] 2025-11-27 15:18:47,674 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:18:47] 2025-11-27 15:18:47,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:18:47] 2025-11-27 15:18:47,680 [wrapper] pilotpid: 60862
[2025-11-27 16:18:47] 2025-11-27 15:18:47,683 [wrapper] Pilot exit status: 0
[2025-11-27 16:18:47] 2025-11-27 15:18:47,690 [wrapper] pandaids: 6896764157
[2025-11-27 16:18:47] 2025-11-27 15:18:47,706 [wrapper] cleanup supervisor_pilot   60868 60863
[2025-11-27 16:18:47] 2025-11-27 15:18:47,709 [wrapper] Test setup, not cleaning
[2025-11-27 16:18:47] 2025-11-27 15:18:47,712 [wrapper] apfmon messages muted
[2025-11-27 16:18:47] 2025-11-27 15:18:47,715 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:18:47] 2025-11-27 15:18:47,718 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:18:47]  *** Error codes and diagnostics ***
[2025-11-27 16:18:47]     "exeErrorCode": 65,
[2025-11-27 16:18:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:18:47]     "pilotErrorCode": 1305,
[2025-11-27 16:18:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:18:47]  *** Listing of results directory ***
[2025-11-27 16:18:47] total 403996
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc    576529 Nov 25 09:00 pilot3.tar.gz
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      5112 Nov 25 09:32 queuedata.json
[2025-11-27 16:18:47] -rwx------ 1 boinc boinc     36292 Nov 25 09:35 runpilot2-wrapper.sh
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc       100 Nov 27 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:18:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 16:14 run_atlas
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc       105 Nov 27 16:14 job.xml
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc 409499365 Nov 27 16:14 EVNT.47483658._004250.pool.root.1
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc    590100 Nov 27 16:14 input.tar.gz
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:14 start_atlas.sh
[2025-11-27 16:18:47] drwxrwx--x 2 boinc boinc      4096 Nov 27 16:14 shared
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:14 boinc_setup_complete
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      6196 Nov 27 16:14 init_data.xml
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:14 boinc_lockfile
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      2781 Nov 27 16:14 pandaJob.out
[2025-11-27 16:18:47] -rw------- 1 boinc boinc    991572 Nov 27 16:14 agis_schedconf.cvmfs.json
[2025-11-27 16:18:47] -rw------- 1 boinc boinc   1516240 Nov 27 16:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:18:47] drwx------ 5 boinc boinc      4096 Nov 27 16:14 pilot3
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc       523 Nov 27 16:15 boinc_task_state.xml
[2025-11-27 16:18:47] -rw------- 1 boinc boinc       981 Nov 27 16:15 memory_monitor_summary.json
[2025-11-27 16:18:47] -rw------- 1 boinc boinc     55896 Nov 27 16:15 log.47556185._000131.job.log.tgz.1
[2025-11-27 16:18:47] -rw------- 1 boinc boinc        95 Nov 27 16:17 pilot_heartbeat.json
[2025-11-27 16:18:47] -rw------- 1 boinc boinc      8391 Nov 27 16:17 heartbeat.json
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc        23 Nov 27 16:18 wrapper_checkpoint.txt
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:18 boinc_mmap_file
[2025-11-27 16:18:47] -rw------- 1 boinc boinc      4936 Nov 27 16:18 pilotlog.txt
[2025-11-27 16:18:47] -rw------- 1 boinc boinc     92038 Nov 27 16:18 log.47556185._000131.job.log.1
[2025-11-27 16:18:47] -rw------- 1 boinc boinc       186 Nov 27 16:18 output.list
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:18 runtime_log
[2025-11-27 16:18:47] -rw------- 1 boinc boinc    163840 Nov 27 16:18 result.tar.gz
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      8744 Nov 27 16:18 runtime_log.err
[2025-11-27 16:18:47] -rw------- 1 boinc boinc       649 Nov 27 16:18 1omMDmQh3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4FMKDm8WtBfn.diag
[2025-11-27 16:18:47] -rw-r--r-- 1 boinc boinc      9262 Nov 27 16:18 stderr.txt
[2025-11-27 16:18:47] No HITS result produced
[2025-11-27 16:18:47]  *** Contents of shared directory: ***
[2025-11-27 16:18:47] total 400664
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc 409499365 Nov 27 16:14 ATLAS.root_0
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc    590100 Nov 27 16:14 input.tar.gz
[2025-11-27 16:18:47] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:14 start_atlas.sh
[2025-11-27 16:18:47] -rw------- 1 boinc boinc    163840 Nov 27 16:18 result.tar.gz
16:18:49 (57126): run_atlas exited; CPU time 31.289995
16:18:49 (57126): called boinc_finish(0)

</stderr_txt>
]]>

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