Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:17 (98743): wrapper (7.7.26015): starting
16:23:17 (98743): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 16:23:17] Arguments: --nthreads 3
[2025-11-27 16:23:17] Threads: 3
[2025-11-27 16:23:17] Checking for CVMFS
[2025-11-27 16:23:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:23:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:23:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:23:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:23:17] 2.9.2.0 3252557 464 70020 153371 2 88 36039556 36864000 0 130560 0 3104789 99.999 22542 13449 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 16:23:17] CVMFS is ok
[2025-11-27 16:23:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:23:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:23:17] Further information can be found at the LHC@home message board.
[2025-11-27 16:23:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:23:17] Checking for apptainer binary...
[2025-11-27 16:23:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:23:17] Running /usr/bin/apptainer --version
[2025-11-27 16:23:17] apptainer version 1.4.1-1.1
[2025-11-27 16:23:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:23:17] thA335
[2025-11-27 16:23:17] apptainer works
[2025-11-27 16:23:17] Set ATHENA_PROC_NUMBER=3
[2025-11-27 16:23:17] Set ATHENA_CORE_NUMBER=3
[2025-11-27 16:23:17] Starting ATLAS job with PandaID=6898377161
[2025-11-27 16:23:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:27:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:27:35] 2025-11-27 15:26:43,418 | INFO     | ***************************************
[2025-11-27 16:27:35] 2025-11-27 15:26:43,921 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | INFO     | sufficient remaining disk space (826791690240 B)
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | INFO     | update_server=False
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:27:35] 2025-11-27 15:26:43,935 | INFO     | aborting loop
[2025-11-27 16:27:35] 2025-11-27 15:26:44,022 | INFO     | all job control threads have been joined
[2025-11-27 16:27:35] 2025-11-27 15:26:44,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:27:35] 2025-11-27 15:26:44,821 | INFO     | all data control threads have been joined
[2025-11-27 16:27:35] 2025-11-27 15:26:44,939 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:44,941 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:44,941 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:44,982 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:45,028 | INFO     | [job] control thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:45,155 | INFO     | all payload control threads have been joined
[2025-11-27 16:27:35] 2025-11-27 15:26:45,577 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:45,747 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:45,827 | INFO     | [data] control thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:45,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,121 | INFO     | [job] validate thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,161 | INFO     | [payload] control thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,201 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,257 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,331 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,438 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:26:46,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:27:35] 2025-11-27 15:26:50,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:27:35] 2025-11-27 15:27:14,304 | INFO     | PID=102471 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:27:35] 2025-11-27 15:27:14,304 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:27:35] 2025-11-27 15:27:14,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:27:35] 2025-11-27 15:27:14,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:27:35] 2025-11-27 15:27:29,432 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:27:35] 2025-11-27 15:27:30,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784617068352)>', '<ExcThread(monitor, started 139783988827904)>']
[2025-11-27 16:27:35] 2025-11-27 15:27:31,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:27:35] 2025-11-27 15:27:31,395 | INFO     | [monitor] control thread has ended
[2025-11-27 16:27:35] 2025-11-27 15:27:35,603 | INFO     | all workflow threads have been joined
[2025-11-27 16:27:35] 2025-11-27 15:27:35,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:27:35] 2025-11-27 15:27:35,604 | INFO     | traces error code: 0
[2025-11-27 16:27:35] 2025-11-27 15:27:35,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:27:35] 2025-11-27 15:27:35,651 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:27:35] 2025-11-27 15:27:35,654 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:27:35] 2025-11-27 15:27:35,657 [wrapper] pilotpid: 102471
[2025-11-27 16:27:35] 2025-11-27 15:27:35,659 [wrapper] Pilot exit status: 0
[2025-11-27 16:27:35] 2025-11-27 15:27:35,667 [wrapper] pandaids: 6898377161
[2025-11-27 16:27:35] 2025-11-27 15:27:35,684 [wrapper] cleanup supervisor_pilot  102477 102472
[2025-11-27 16:27:35] 2025-11-27 15:27:35,687 [wrapper] Test setup, not cleaning
[2025-11-27 16:27:35] 2025-11-27 15:27:35,690 [wrapper] apfmon messages muted
[2025-11-27 16:27:35] 2025-11-27 15:27:35,692 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:27:35] 2025-11-27 15:27:35,695 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:27:35]  *** Error codes and diagnostics ***
[2025-11-27 16:27:35]     "exeErrorCode": 65,
[2025-11-27 16:27:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:27:35]     "pilotErrorCode": 1305,
[2025-11-27 16:27:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:27:35]  *** Listing of results directory ***
[2025-11-27 16:27:35] total 402656
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:22 queuedata.json
[2025-11-27 16:27:35] -rwx------ 1 boinc boinc     36292 Nov 26 17:23 runpilot2-wrapper.sh
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc       100 Nov 27 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:27:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 16:23 run_atlas
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc       105 Nov 27 16:23 job.xml
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc 408128125 Nov 27 16:23 EVNT.47483658._003201.pool.root.1
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc    590106 Nov 27 16:23 input.tar.gz
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:23 start_atlas.sh
[2025-11-27 16:27:35] drwxrwx--x 2 boinc boinc      4096 Nov 27 16:23 shared
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:23 boinc_setup_complete
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      6196 Nov 27 16:23 init_data.xml
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:23 boinc_lockfile
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      2786 Nov 27 16:23 pandaJob.out
[2025-11-27 16:27:35] -rw------- 1 boinc boinc    991572 Nov 27 16:23 agis_schedconf.cvmfs.json
[2025-11-27 16:27:35] -rw------- 1 boinc boinc   1516240 Nov 27 16:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:27:35] drwx------ 5 boinc boinc      4096 Nov 27 16:23 pilot3
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc       522 Nov 27 16:24 boinc_task_state.xml
[2025-11-27 16:27:35] -rw------- 1 boinc boinc       954 Nov 27 16:24 memory_monitor_summary.json
[2025-11-27 16:27:35] -rw------- 1 boinc boinc     55733 Nov 27 16:24 log.47556173._001576.job.log.tgz.1
[2025-11-27 16:27:35] -rw------- 1 boinc boinc        95 Nov 27 16:26 pilot_heartbeat.json
[2025-11-27 16:27:35] -rw------- 1 boinc boinc      8402 Nov 27 16:26 heartbeat.json
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:27 boinc_mmap_file
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc        22 Nov 27 16:27 wrapper_checkpoint.txt
[2025-11-27 16:27:35] -rw------- 1 boinc boinc      4751 Nov 27 16:27 pilotlog.txt
[2025-11-27 16:27:35] -rw------- 1 boinc boinc     93398 Nov 27 16:27 log.47556173._001576.job.log.1
[2025-11-27 16:27:35] -rw------- 1 boinc boinc       186 Nov 27 16:27 output.list
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:27 runtime_log
[2025-11-27 16:27:35] -rw------- 1 boinc boinc    163840 Nov 27 16:27 result.tar.gz
[2025-11-27 16:27:35] -rw------- 1 boinc boinc       649 Nov 27 16:27 tTKMDmpTXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmD9MKDmI770Ym.diag
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      8744 Nov 27 16:27 runtime_log.err
[2025-11-27 16:27:35] -rw-r--r-- 1 boinc boinc      8331 Nov 27 16:27 stderr.txt
[2025-11-27 16:27:35] No HITS result produced
[2025-11-27 16:27:35]  *** Contents of shared directory: ***
[2025-11-27 16:27:35] total 399324
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc 408128125 Nov 27 16:23 ATLAS.root_0
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc    590106 Nov 27 16:23 input.tar.gz
[2025-11-27 16:27:35] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:23 start_atlas.sh
[2025-11-27 16:27:35] -rw------- 1 boinc boinc    163840 Nov 27 16:27 result.tar.gz
16:27:36 (98743): run_atlas exited; CPU time 31.372406
16:27:36 (98743): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN