Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:23 (699033): wrapper (7.7.26015): starting
07:22:23 (699033): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 07:22:23] Arguments: --nthreads 12
[2025-11-27 07:22:23] Threads: 12
[2025-11-27 07:22:23] Checking for CVMFS
[2025-11-27 07:22:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:22:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:22:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:22:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:22:24] 2.11.5.0 2451234 29700 208088 153371 1 73 34168643 45568000 20166 130560 0 270455432 99.771 175438791 26050 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-27 07:22:24] CVMFS is ok
[2025-11-27 07:22:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:22:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:22:24] Further information can be found at the LHC@home message board.
[2025-11-27 07:22:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:22:24] Checking for apptainer binary...
[2025-11-27 07:22:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:22:24] Running /usr/bin/apptainer --version
[2025-11-27 07:22:24] apptainer version 1.4.1-1.el9
[2025-11-27 07:22:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:22:24] wns0065.triumf.lcg
[2025-11-27 07:22:24] apptainer works
[2025-11-27 07:22:24] Set ATHENA_PROC_NUMBER=12
[2025-11-27 07:22:24] Set ATHENA_CORE_NUMBER=12
[2025-11-27 07:22:24] Starting ATLAS job with PandaID=6898988797
[2025-11-27 07:22:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:29:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | WARNING  | wrong length of table data, x=[1764257042.0, 1764257103.0], y=[1829.0, 864911.0] (must be same and length>=4)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | could have reported an average CPU frequency of 2619 MHz (4 samples)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . Timing measurements:
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . get job = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . initial setup = 4 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload setup = 19 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-in = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload execution = 122 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-out = 1 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . log creation = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898988797/pilotlog.txt
[2025-11-27 07:29:01] 2025-11-27 15:28:07,410 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 07:29:01] - Log from pilotlog.txt -
[2025-11-27 07:29:01] 2025-11-27 15:28:07,395 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898988797/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | INFO     | extracted standard info from prmon json
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | WARNING  | wrong length of table data, x=[1764257042.0, 1764257103.0], y=[1829.0, 864911.0] (must be same and length>=4)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | could have reported an average CPU frequency of 2619 MHz (4 samples)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . Timing measurements:
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . get job = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . initial setup = 4 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload setup = 19 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-in = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload execution = 122 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-out = 1 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . log creation = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898988797/pilotlog.txt
[2025-11-27 07:29:01] 2025-11-27 15:28:07,410 | WARNING  | 
[2025-11-27 07:29:01] [begin log extracts]
[2025-11-27 07:29:01] - Log from pilotlog.txt -
[2025-11-27 07:29:01] 2025-11-27 15:28:07,395 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898988797/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | INFO     | extracted standard info from prmon json
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 07:29:01] 2025-11-27 15:28:07,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | WARNING  | wrong length of table data, x=[1764257042.0, 1764257103.0], y=[1829.0, 864911.0] (must be same and length>=4)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | could have reported an average CPU frequency of 2619 MHz (4 samples)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,397 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . Timing measurements:
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . get job = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . initial setup = 4 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload setup = 19 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-in = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . payload execution = 122 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . stage-out = 1 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | . log creation = 0 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | ..............................
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:29:01] 2025-11-27 15:28:07,398 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898988797/pilotlog.txt
[2025-11-27 07:29:01] [end log extracts]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,411 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,411 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | 
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | job summary report
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | --------------------------------------------------
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | PanDA job id: 6898988797
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | task id: 47556161
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 07:25:46,922 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | pilot state: failed 
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | transexitcode: 65
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | exeerrorcode: 65
[2025-11-27 07:29:01] 2025-11-27 15:28:07,470 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | exitcode: 65
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | cpuconsumptiontime: 44 s
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | nevents: 0
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | neventsw: 0
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | pid: 709590
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | pgrp: 709590
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | corecount: 12
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | event service: False
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | sizes: {0: 2283483, 1: 2284165, 2: 2284364, 13: 2284364, 16: 2284682, 24: 2284710, 146: 2310259, 148: 2314577, 278: 2314715}
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | --------------------------------------------------
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | 
[2025-11-27 07:29:01] 2025-11-27 15:28:07,471 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | job 6898988797 has completed (purged errors)
[2025-11-27 07:29:01] 2025-11-27 15:28:07,495 | INFO     | overall cleanup function is called
[2025-11-27 07:29:01] 2025-11-27 15:28:08,526 | INFO     | --- collectZombieJob: --- 10, [709590]
[2025-11-27 07:29:01] 2025-11-27 15:28:08,526 | INFO     | zombie collector waiting for pid 709590
[2025-11-27 07:29:01] 2025-11-27 15:28:08,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:29:01] 2025-11-27 15:28:08,526 | INFO     | collected zombie processes
[2025-11-27 07:29:01] 2025-11-27 15:28:08,526 | INFO     | will attempt to kill all subprocesses of pid=709590
[2025-11-27 07:29:01] 2025-11-27 15:28:08,887 | INFO     | process IDs to be killed: [709590] (in reverse order)
[2025-11-27 07:29:01] 2025-11-27 15:28:09,384 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:29:01] 2025-11-27 15:28:09,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:29:01] 2025-11-27 15:28:09,448 | INFO     | did not find any defunct processes belonging to 709590
[2025-11-27 07:29:01] 2025-11-27 15:28:09,574 | INFO     | did not find any defunct processes belonging to 709590
[2025-11-27 07:29:01] 2025-11-27 15:28:09,575 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:29:01] 2025-11-27 15:28:09,576 | INFO     | ready for new job
[2025-11-27 07:29:01] 2025-11-27 15:28:09,576 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:29:01] 2025-11-27 15:28:09,577 | INFO     | ***************************************
[2025-11-27 07:29:01] 2025-11-27 15:28:09,577 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:29:01] 2025-11-27 15:28:09,577 | INFO     | ***************************************
[2025-11-27 07:29:01] 2025-11-27 15:28:09,577 | INFO     | 
[2025-11-27 07:29:01] 2025-11-27 15:28:09,587 | INFO     | architecture information:
[2025-11-27 07:29:01] 2025-11-27 15:28:09,587 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:29:01] 2025-11-27 15:28:09,600 | INFO     | cat /etc/os-release:
[2025-11-27 07:29:01] NAME="CentOS Linux"
[2025-11-27 07:29:01] VERSION="7 (Core)"
[2025-11-27 07:29:01] ID="centos"
[2025-11-27 07:29:01] ID_LIKE="rhel fedora"
[2025-11-27 07:29:01] VERSION_ID="7"
[2025-11-27 07:29:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:29:01] ANSI_COLOR="0;31"
[2025-11-27 07:29:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:29:01] HOME_URL="https://www.centos.org/"
[2025-11-27 07:29:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:29:01] 
[2025-11-27 07:29:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:29:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:29:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:29:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:29:01] 
[2025-11-27 07:29:01] 2025-11-27 15:28:09,600 | INFO     | ***************************************
[2025-11-27 07:29:01] 2025-11-27 15:28:10,105 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 07:29:01] 2025-11-27 15:28:10,158 | INFO     | sufficient remaining disk space (1999681617920 B)
[2025-11-27 07:29:01] 2025-11-27 15:28:10,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:29:01] 2025-11-27 15:28:10,159 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:29:01] 2025-11-27 15:28:10,159 | INFO     | update_server=False
[2025-11-27 07:29:01] 2025-11-27 15:28:10,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:29:01] 2025-11-27 15:28:10,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:29:01] 2025-11-27 15:28:10,194 | INFO     | all data control threads have been joined
[2025-11-27 07:29:01] 2025-11-27 15:28:10,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:29:01] 2025-11-27 15:28:10,357 | INFO     | all payload control threads have been joined
[2025-11-27 07:29:01] 2025-11-27 15:28:10,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:29:01] 2025-11-27 15:28:10,700 | INFO     | aborting loop
[2025-11-27 07:29:01] 2025-11-27 15:28:11,095 | INFO     | all job control threads have been joined
[2025-11-27 07:29:01] 2025-11-27 15:28:11,165 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,199 | INFO     | [data] control thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,315 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,359 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,363 | INFO     | [payload] control thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,597 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,613 | INFO     | [job] validate thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,706 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:11,976 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:12,003 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:12,034 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:12,101 | INFO     | [job] control thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:12,243 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:12,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:29:01] 2025-11-27 15:28:12,647 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:13,491 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:14,170 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:29:01] 2025-11-27 15:28:39,623 | INFO     | PID=702786 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:29:01] 2025-11-27 15:28:39,623 | INFO     | .. there are 42 such processes running
[2025-11-27 07:29:01] 2025-11-27 15:28:39,624 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:29:01] 2025-11-27 15:28:39,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:29:01] 2025-11-27 15:28:39,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:29:01] 2025-11-27 15:28:53,141 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:29:01] 2025-11-27 15:28:55,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971160434496)>', '<ExcThread(monitor, started 139970601793280)>']
[2025-11-27 07:29:01] 2025-11-27 15:28:55,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:29:01] 2025-11-27 15:28:55,722 | INFO     | [monitor] control thread has ended
[2025-11-27 07:29:01] 2025-11-27 15:29:00,144 | INFO     | all workflow threads have been joined
[2025-11-27 07:29:01] 2025-11-27 15:29:00,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:29:01] 2025-11-27 15:29:00,144 | INFO     | traces error code: 0
[2025-11-27 07:29:01] 2025-11-27 15:29:00,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:29:01] 2025-11-27 15:29:00,403 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:29:01] 2025-11-27 15:29:00,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:29:01] 2025-11-27 15:29:00,422 [wrapper] pilotpid: 702786
[2025-11-27 07:29:01] 2025-11-27 15:29:00,436 [wrapper] Pilot exit status: 0
[2025-11-27 07:29:01] 2025-11-27 15:29:00,486 [wrapper] pandaids: 6898988797
[2025-11-27 07:29:01] 2025-11-27 15:29:00,583 [wrapper] cleanup supervisor_pilot  702792 702787
[2025-11-27 07:29:01] 2025-11-27 15:29:00,585 [wrapper] Test setup, not cleaning
[2025-11-27 07:29:01] 2025-11-27 15:29:00,587 [wrapper] apfmon messages muted
[2025-11-27 07:29:01] 2025-11-27 15:29:00,589 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:29:01] 2025-11-27 15:29:00,590 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:29:01]  *** Error codes and diagnostics ***
[2025-11-27 07:29:01]     "exeErrorCode": 65,
[2025-11-27 07:29:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 07:29:01]     "pilotErrorCode": 1305,
[2025-11-27 07:29:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 07:29:01]  *** Listing of results directory ***
[2025-11-27 07:29:01] total 400424
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:09 pilot3.tar.gz
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:25 queuedata.json
[2025-11-27 07:29:01] -rwx------. 1 boinc boinc     36292 Nov 26 17:25 runpilot2-wrapper.sh
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc       100 Nov 27 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:29:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 07:22 run_atlas
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc       105 Nov 27 07:22 job.xml
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc      6596 Nov 27 07:22 init_data.xml
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc 405808886 Nov 27 07:22 EVNT.47483658._002771.pool.root.1
[2025-11-27 07:29:01] drwxrwx--x. 2 boinc boinc      4096 Nov 27 07:22 shared
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc    590103 Nov 27 07:22 input.tar.gz
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:22 start_atlas.sh
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc         0 Nov 27 07:22 boinc_lockfile
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc      2785 Nov 27 07:22 pandaJob.out
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc    991572 Nov 27 07:22 agis_schedconf.cvmfs.json
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc   1516240 Nov 27 07:22 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:29:01] drwx------. 5 boinc boinc      4096 Nov 27 07:22 pilot3
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc       525 Nov 27 07:25 boinc_task_state.xml
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc      1012 Nov 27 07:25 memory_monitor_summary.json
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc     49619 Nov 27 07:25 log.47556161._007531.job.log.tgz.1
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc        95 Nov 27 07:27 pilot_heartbeat.json
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc     10338 Nov 27 07:28 heartbeat.json
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc        23 Nov 27 07:28 wrapper_checkpoint.txt
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc      8192 Nov 27 07:28 boinc_mmap_file
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc      4822 Nov 27 07:29 pilotlog.txt
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc    105499 Nov 27 07:29 log.47556161._007531.job.log.1
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc       186 Nov 27 07:29 output.list
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc       620 Nov 27 07:29 runtime_log
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc    174080 Nov 27 07:29 result.tar.gz
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc       647 Nov 27 07:29 vHzKDmLwfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRTNKDm8o2hWn.diag
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc      8636 Nov 27 07:29 runtime_log.err
[2025-11-27 07:29:01] -rw-r--r--. 1 boinc boinc     22486 Nov 27 07:29 stderr.txt
[2025-11-27 07:29:01] No HITS result produced
[2025-11-27 07:29:01]  *** Contents of shared directory: ***
[2025-11-27 07:29:01] total 397072
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc 405808886 Nov 27 07:22 ATLAS.root_0
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc    590103 Nov 27 07:22 input.tar.gz
[2025-11-27 07:29:01] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:22 start_atlas.sh
[2025-11-27 07:29:01] -rw-------. 1 boinc boinc    174080 Nov 27 07:29 result.tar.gz
07:29:03 (699033): run_atlas exited; CPU time 48.127188
07:29:03 (699033): called boinc_finish(0)

</stderr_txt>
]]>

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