Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:39:46 (1254910): wrapper (7.7.26015): starting
07:39:46 (1254910): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 07:39:46] Arguments: --nthreads 12
[2025-11-27 07:39:46] Threads: 12
[2025-11-27 07:39:46] Checking for CVMFS
[2025-11-27 07:39:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:39:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:39:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:39:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:39:46] 2.11.5.0 1674450 29885 204472 153371 2 514 41338954 45568001 16582 130560 0 280244257 99.783 166026674 23442 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-27 07:39:46] CVMFS is ok
[2025-11-27 07:39:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:39:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:39:46] Further information can be found at the LHC@home message board.
[2025-11-27 07:39:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:39:46] Checking for apptainer binary...
[2025-11-27 07:39:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:39:46] Running /usr/bin/apptainer --version
[2025-11-27 07:39:47] apptainer version 1.4.1-1.el9
[2025-11-27 07:39:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:39:47] wns0069.triumf.lcg
[2025-11-27 07:39:47] apptainer works
[2025-11-27 07:39:47] Set ATHENA_PROC_NUMBER=12
[2025-11-27 07:39:47] Set ATHENA_CORE_NUMBER=12
[2025-11-27 07:39:47] Starting ATLAS job with PandaID=6894250297
[2025-11-27 07:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:46:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . Timing measurements:
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . get job = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . initial setup = 3 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload setup = 16 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-in = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload execution = 124 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-out = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . log creation = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894250297/pilotlog.txt
[2025-11-27 07:46:19] 2025-11-27 15:45:12,535 | INFO     | time since job start (300s) is within the limit (172800.0s)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,604 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 07:46:19] - Log from pilotlog.txt -
[2025-11-27 07:46:19] 2025-11-27 15:45:12,499 | INFO     | extracted standard info from prmon json
[2025-11-27 07:46:19] 2025-11-27 15:45:12,499 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | wrong length of table data, x=[1764258058.0, 1764258119.0], y=[1561.0, 799722.0] (must be same and length>=4)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | could have reported an average CPU frequency of 2573 MHz (4 samples)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . Timing measurements:
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . get job = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . initial setup = 3 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload setup = 16 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-in = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload execution = 124 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-out = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . log creation = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894250297/pilotlog.txt
[2025-11-27 07:46:19] 2025-11-27 15:45:12,535 | INFO     | time since job start (300s) is within the limit (172800.0s)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,605 | WARNING  | 
[2025-11-27 07:46:19] [begin log extracts]
[2025-11-27 07:46:19] - Log from pilotlog.txt -
[2025-11-27 07:46:19] 2025-11-27 15:45:12,499 | INFO     | extracted standard info from prmon json
[2025-11-27 07:46:19] 2025-11-27 15:45:12,499 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 07:46:19] 2025-11-27 15:45:12,500 | WARNING  | wrong length of table data, x=[1764258058.0, 1764258119.0], y=[1561.0, 799722.0] (must be same and length>=4)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | could have reported an average CPU frequency of 2573 MHz (4 samples)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . Timing measurements:
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . get job = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . initial setup = 3 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload setup = 16 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-in = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . payload execution = 124 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . stage-out = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,501 | INFO     | . log creation = 0 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | ..............................
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 07:46:19] 2025-11-27 15:45:12,502 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894250297/pilotlog.txt
[2025-11-27 07:46:19] 2025-11-27 15:45:12,535 | INFO     | time since job start (300s) is within the limit (172800.0s)
[2025-11-27 07:46:19] [end log extracts]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,605 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,605 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 07:46:19] 2025-11-27 15:45:12,720 | INFO     | 
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | job summary report
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | --------------------------------------------------
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | PanDA job id: 6894250297
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | task id: 47533962
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 07:42:47,661 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | pilot state: failed 
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | transexitcode: 65
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | exeerrorcode: 65
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | exitcode: 65
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | cpuconsumptiontime: 42 s
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | nevents: 0
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | neventsw: 0
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | pid: 1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | pgrp: 1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | corecount: 12
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | event service: False
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | sizes: {0: 2284306, 10: 2284568, 11: 2284596, 142: 2310069, 143: 2310045, 144: 2314363, 146: 2314519, 282: 2314685}
[2025-11-27 07:46:19] 2025-11-27 15:45:12,721 | INFO     | --------------------------------------------------
[2025-11-27 07:46:19] 2025-11-27 15:45:12,722 | INFO     | 
[2025-11-27 07:46:19] 2025-11-27 15:45:12,722 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | job 6894250297 has completed (purged errors)
[2025-11-27 07:46:19] 2025-11-27 15:45:12,778 | INFO     | overall cleanup function is called
[2025-11-27 07:46:19] 2025-11-27 15:45:13,819 | INFO     | --- collectZombieJob: --- 10, [1272467]
[2025-11-27 07:46:19] 2025-11-27 15:45:13,820 | INFO     | zombie collector waiting for pid 1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:13,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:46:19] 2025-11-27 15:45:13,820 | INFO     | collected zombie processes
[2025-11-27 07:46:19] 2025-11-27 15:45:13,820 | INFO     | will attempt to kill all subprocesses of pid=1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:14,434 | INFO     | process IDs to be killed: [1272467] (in reverse order)
[2025-11-27 07:46:19] 2025-11-27 15:45:14,889 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:46:19] 2025-11-27 15:45:14,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:46:19] 2025-11-27 15:45:14,898 | INFO     | did not find any defunct processes belonging to 1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:14,905 | INFO     | did not find any defunct processes belonging to 1272467
[2025-11-27 07:46:19] 2025-11-27 15:45:14,906 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:46:19] 2025-11-27 15:45:14,906 | INFO     | ready for new job
[2025-11-27 07:46:19] 2025-11-27 15:45:14,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:46:19] 2025-11-27 15:45:14,907 | INFO     | ***************************************
[2025-11-27 07:46:19] 2025-11-27 15:45:14,907 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:46:19] 2025-11-27 15:45:14,907 | INFO     | ***************************************
[2025-11-27 07:46:19] 2025-11-27 15:45:14,908 | INFO     | 
[2025-11-27 07:46:19] 2025-11-27 15:45:14,909 | INFO     | architecture information:
[2025-11-27 07:46:19] 2025-11-27 15:45:14,910 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:46:19] 2025-11-27 15:45:14,923 | INFO     | cat /etc/os-release:
[2025-11-27 07:46:19] NAME="CentOS Linux"
[2025-11-27 07:46:19] VERSION="7 (Core)"
[2025-11-27 07:46:19] ID="centos"
[2025-11-27 07:46:19] ID_LIKE="rhel fedora"
[2025-11-27 07:46:19] VERSION_ID="7"
[2025-11-27 07:46:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:46:19] ANSI_COLOR="0;31"
[2025-11-27 07:46:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:46:19] HOME_URL="https://www.centos.org/"
[2025-11-27 07:46:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:46:19] 
[2025-11-27 07:46:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:46:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:46:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:46:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:46:19] 
[2025-11-27 07:46:19] 2025-11-27 15:45:14,924 | INFO     | ***************************************
[2025-11-27 07:46:19] 2025-11-27 15:45:15,427 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 07:46:19] 2025-11-27 15:45:15,445 | INFO     | sufficient remaining disk space (1276114894848 B)
[2025-11-27 07:46:19] 2025-11-27 15:45:15,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:46:19] 2025-11-27 15:45:15,445 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:46:19] 2025-11-27 15:45:15,445 | INFO     | update_server=False
[2025-11-27 07:46:19] 2025-11-27 15:45:15,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:46:19] 2025-11-27 15:45:15,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:46:19] 2025-11-27 15:45:15,783 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 07:46:19] 2025-11-27 15:45:15,784 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 07:46:19] 2025-11-27 15:45:15,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:19] 2025-11-27 15:45:15,784 | INFO     | will abort loop
[2025-11-27 07:46:19] 2025-11-27 15:45:16,077 | INFO     | all payload control threads have been joined
[2025-11-27 07:46:19] 2025-11-27 15:45:16,103 | INFO     | all data control threads have been joined
[2025-11-27 07:46:19] 2025-11-27 15:45:16,451 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:16,789 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:16,890 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:16,891 | INFO     | [job] validate thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:16,937 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:16,954 | INFO     | all job control threads have been joined
[2025-11-27 07:46:19] 2025-11-27 15:45:17,000 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,083 | INFO     | [payload] control thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,109 | INFO     | [data] control thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,264 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,318 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,319 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,684 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:19] 2025-11-27 15:45:17,767 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:17,960 | INFO     | [job] control thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:18,736 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:18,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:46:19] 2025-11-27 15:45:22,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:46:19] 2025-11-27 15:45:46,701 | INFO     | PID=1262651 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:46:19] 2025-11-27 15:45:46,701 | INFO     | .. there are 28 such processes running
[2025-11-27 07:46:19] 2025-11-27 15:45:46,701 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:46:19] 2025-11-27 15:45:46,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:46:19] 2025-11-27 15:45:46,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:46:19] 2025-11-27 15:46:12,651 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:46:19] 2025-11-27 15:46:14,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169018537792)>', '<ExcThread(monitor, started 140167666988800)>']
[2025-11-27 07:46:19] 2025-11-27 15:46:14,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:46:19] 2025-11-27 15:46:14,886 | INFO     | [monitor] control thread has ended
[2025-11-27 07:46:19] 2025-11-27 15:46:19,209 | INFO     | all workflow threads have been joined
[2025-11-27 07:46:19] 2025-11-27 15:46:19,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:46:19] 2025-11-27 15:46:19,210 | INFO     | traces error code: 0
[2025-11-27 07:46:19] 2025-11-27 15:46:19,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:46:19] 2025-11-27 15:46:19,447 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:46:19] 2025-11-27 15:46:19,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:46:19] 2025-11-27 15:46:19,450 [wrapper] pilotpid: 1262651
[2025-11-27 07:46:19] 2025-11-27 15:46:19,452 [wrapper] Pilot exit status: 0
[2025-11-27 07:46:19] 2025-11-27 15:46:19,461 [wrapper] pandaids: 6894250297
[2025-11-27 07:46:19] 2025-11-27 15:46:19,506 [wrapper] cleanup supervisor_pilot 1262662 1262652
[2025-11-27 07:46:19] 2025-11-27 15:46:19,508 [wrapper] Test setup, not cleaning
[2025-11-27 07:46:19] 2025-11-27 15:46:19,510 [wrapper] apfmon messages muted
[2025-11-27 07:46:19] 2025-11-27 15:46:19,512 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:46:19] 2025-11-27 15:46:19,513 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:46:19]  *** Error codes and diagnostics ***
[2025-11-27 07:46:19]     "exeErrorCode": 65,
[2025-11-27 07:46:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 07:46:19]     "pilotErrorCode": 1305,
[2025-11-27 07:46:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 07:46:19]  *** Listing of results directory ***
[2025-11-27 07:46:19] total 405532
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:09 pilot3.tar.gz
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:25 queuedata.json
[2025-11-27 07:46:19] -rwx------. 1 boinc boinc     36292 Nov 26 17:25 runpilot2-wrapper.sh
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc       100 Nov 27 07:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:46:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 07:39 run_atlas
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc       105 Nov 27 07:39 job.xml
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc      6596 Nov 27 07:39 init_data.xml
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc 411040262 Nov 27 07:39 EVNT.47493127._001037.pool.root.1
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:39 start_atlas.sh
[2025-11-27 07:46:19] drwxrwx--x. 2 boinc boinc      4096 Nov 27 07:39 shared
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc    590107 Nov 27 07:39 input.tar.gz
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc         0 Nov 27 07:39 boinc_lockfile
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc      2784 Nov 27 07:39 pandaJob.out
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc    991572 Nov 27 07:40 agis_schedconf.cvmfs.json
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc   1516240 Nov 27 07:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:46:19] drwx------. 5 boinc boinc      4096 Nov 27 07:40 pilot3
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc       524 Nov 27 07:42 boinc_task_state.xml
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc       988 Nov 27 07:42 memory_monitor_summary.json
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc     49726 Nov 27 07:42 log.47533962._000361.job.log.tgz.1
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc     10335 Nov 27 07:45 heartbeat.json
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc        95 Nov 27 07:45 pilot_heartbeat.json
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc        23 Nov 27 07:46 wrapper_checkpoint.txt
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc      8192 Nov 27 07:46 boinc_mmap_file
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc      5009 Nov 27 07:46 pilotlog.txt
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc    105089 Nov 27 07:46 log.47533962._000361.job.log.1
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc       186 Nov 27 07:46 output.list
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc       620 Nov 27 07:46 runtime_log
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc    174080 Nov 27 07:46 result.tar.gz
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc      8636 Nov 27 07:46 runtime_log.err
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc       644 Nov 27 07:46 flDMDmLwfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZLKKDm5uspRm.diag
[2025-11-27 07:46:19] -rw-r--r--. 1 boinc boinc     22361 Nov 27 07:46 stderr.txt
[2025-11-27 07:46:19] No HITS result produced
[2025-11-27 07:46:19]  *** Contents of shared directory: ***
[2025-11-27 07:46:19] total 402180
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc 411040262 Nov 27 07:39 ATLAS.root_0
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:39 start_atlas.sh
[2025-11-27 07:46:19] -rw-r--r--. 2 boinc boinc    590107 Nov 27 07:39 input.tar.gz
[2025-11-27 07:46:19] -rw-------. 1 boinc boinc    174080 Nov 27 07:46 result.tar.gz
07:46:21 (1254910): run_atlas exited; CPU time 45.337467
07:46:21 (1254910): called boinc_finish(0)

</stderr_txt>
]]>

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