Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:39:10 (126888): wrapper (7.7.26015): starting
10:39:10 (126888): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:39:10] Arguments: --nthreads 8
[2025-11-27 10:39:10] Threads: 8
[2025-11-27 10:39:10] Checking for CVMFS
[2025-11-27 10:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:39:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:39:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:39:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:39:12] 2.13.3.0 12846 31634 262436 153371 0 547 30624837 32935936 40282 16776704 0 171930141 99.504 215275296 38335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 10:39:12] CVMFS is ok
[2025-11-27 10:39:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:39:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:39:12] Further information can be found at the LHC@home message board.
[2025-11-27 10:39:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:39:12] Checking for apptainer binary...
[2025-11-27 10:39:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:39:12] Running /usr/bin/apptainer --version
[2025-11-27 10:39:12] apptainer version 1.4.4-1.el9
[2025-11-27 10:39:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:39:12] c7-16-9.aglt2.org
[2025-11-27 10:39:12] apptainer works
[2025-11-27 10:39:12] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:39:12] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:39:12] Starting ATLAS job with PandaID=6898377143
[2025-11-27 10:39:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:16:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:16:21] 2025-11-28 01:15:18,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:21] 2025-11-28 01:15:18,826 | INFO     | time since job start (34502s) is within the limit (172800.0s)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,603 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:16:21] 2025-11-28 01:15:20,611 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3008.2957083333326
[2025-11-27 20:16:21] 2025-11-28 01:15:20,629 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898377143/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,636 | INFO     | extracted standard info from prmon json
[2025-11-27 20:16:21] 2025-11-28 01:15:20,636 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:16:21] 2025-11-28 01:15:20,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:16:21] 2025-11-28 01:15:20,645 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:16:21] 2025-11-28 01:15:20,646 | INFO     | sum of square deviations: 55630279468.35993
[2025-11-27 20:16:21] 2025-11-28 01:15:20,652 | INFO     | sum of deviations: 472962360073.86676
[2025-11-27 20:16:21] 2025-11-28 01:15:20,652 | INFO     | mean x: 1764275297.5336878
[2025-11-27 20:16:21] 2025-11-28 01:15:20,652 | INFO     | mean y: 2870167.664893617
[2025-11-27 20:16:21] 2025-11-28 01:15:20,652 | INFO     | intersect: -14996799374.10232
[2025-11-27 20:16:21] 2025-11-28 01:15:20,653 | INFO     | chi2: 8.01975140202379
[2025-11-27 20:16:21] 2025-11-28 01:15:20,654 | INFO     | sum of square deviations: 54163992572.96955
[2025-11-27 20:16:21] 2025-11-28 01:15:20,660 | INFO     | sum of deviations: 669299670016.357
[2025-11-27 20:16:21] 2025-11-28 01:15:20,660 | INFO     | mean x: 1764275145.0429337
[2025-11-27 20:16:21] 2025-11-28 01:15:20,660 | INFO     | mean y: 2890585.31842576
[2025-11-27 20:16:21] 2025-11-28 01:15:20,660 | INFO     | intersect: -21798101481.588154
[2025-11-27 20:16:21] 2025-11-28 01:15:20,661 | INFO     | chi2: 4.6265323516721555
[2025-11-27 20:16:21] 2025-11-28 01:15:20,661 | INFO     | current chi2=4.6265323516721555 (change=42.310775986090455 %)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,662 | INFO     | sum of square deviations: 52723672189.08506
[2025-11-27 20:16:21] 2025-11-28 01:15:20,668 | INFO     | sum of deviations: 743459409915.4764
[2025-11-27 20:16:21] 2025-11-28 01:15:20,668 | INFO     | mean x: 1764274992.5505414
[2025-11-27 20:16:21] 2025-11-28 01:15:20,669 | INFO     | mean y: 2898393.411552347
[2025-11-27 20:16:21] 2025-11-28 01:15:20,669 | INFO     | intersect: -24875240598.617924
[2025-11-27 20:16:21] 2025-11-28 01:15:20,669 | INFO     | chi2: 3.5021345528865413
[2025-11-27 20:16:21] 2025-11-28 01:15:20,669 | INFO     | current chi2=3.5021345528865413 (change=24.30325162168651 %)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,669 | INFO     | right removable region: 553
[2025-11-27 20:16:21] 2025-11-28 01:15:20,670 | INFO     | sum of square deviations: 54163636942.96954
[2025-11-27 20:16:21] 2025-11-28 01:15:20,677 | INFO     | sum of deviations: 276752159683.87823
[2025-11-27 20:16:21] 2025-11-28 01:15:20,677 | INFO     | mean x: 1764275450.0429337
[2025-11-27 20:16:21] 2025-11-28 01:15:20,677 | INFO     | mean y: 2890547.1717352415
[2025-11-27 20:16:21] 2025-11-28 01:15:20,677 | INFO     | intersect: -9011774431.672625
[2025-11-27 20:16:21] 2025-11-28 01:15:20,677 | INFO     | chi2: 4.759728295126305
[2025-11-27 20:16:21] 2025-11-28 01:15:20,678 | INFO     | current chi2=4.759728295126305 (change=40.649927204412045 %)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,678 | INFO     | sum of square deviations: 52723097205.27976
[2025-11-27 20:16:21] 2025-11-28 01:15:20,685 | INFO     | sum of deviations: 239887918931.29175
[2025-11-27 20:16:21] 2025-11-28 01:15:20,685 | INFO     | mean x: 1764275602.5469315
[2025-11-27 20:16:21] 2025-11-28 01:15:20,685 | INFO     | mean y: 2894446.642599278
[2025-11-27 20:16:21] 2025-11-28 01:15:20,685 | INFO     | intersect: -8024486817.936287
[2025-11-27 20:16:21] 2025-11-28 01:15:20,686 | INFO     | chi2: 4.6968458127781405
[2025-11-27 20:16:21] 2025-11-28 01:15:20,686 | INFO     | current chi2=4.6968458127781405 (change=1.3211359651044015 %)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,686 | INFO     | left removable region: 20
[2025-11-27 20:16:21] 2025-11-28 01:15:20,686 | INFO     | sum of square deviations: 46952158125.56857
[2025-11-27 20:16:21] 2025-11-28 01:15:20,692 | INFO     | sum of deviations: 452994414876.0163
[2025-11-27 20:16:21] 2025-11-28 01:15:20,692 | INFO     | mean x: 1764275572.0675423
[2025-11-27 20:16:21] 2025-11-28 01:15:20,692 | INFO     | mean y: 2929570.249530957
[2025-11-27 20:16:21] 2025-11-28 01:15:20,693 | INFO     | intersect: -17018800896.567154
[2025-11-27 20:16:21] 2025-11-28 01:15:20,693 | INFO     | chi2: 0.06238771892262214
[2025-11-27 20:16:21] 2025-11-28 01:15:20,693 | INFO     | current memory leak: 9.65 B/s (using 533 data points, chi2=0.06)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,694 | INFO     | could have reported an average CPU frequency of 3059 MHz (22 samples)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,694 | INFO     | ..............................
[2025-11-27 20:16:21] 2025-11-28 01:15:20,694 | INFO     | . Timing measurements:
[2025-11-27 20:16:21] 2025-11-28 01:15:20,694 | INFO     | . get job = 0 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,694 | INFO     | . initial setup = 7 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | . payload setup = 31 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | . stage-in = 0 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | . payload execution = 34391 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | . stage-out = 4 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | . log creation = 1 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,695 | INFO     | ..............................
[2025-11-27 20:16:21] 2025-11-28 01:15:20,779 | INFO     | 
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | job summary report
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | --------------------------------------------------
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | PanDA job id: 6898377143
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | task id: 47556161
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | errors: (none)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | pilot state: finished 
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | transexitcode: 0
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | exeerrorcode: 0
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | exeerrordiag: 
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | exitcode: 0
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | exitmsg: OK
[2025-11-27 20:16:21] 2025-11-28 01:15:20,780 | INFO     | cpuconsumptiontime: 200553 s
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | nevents: 1000
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | neventsw: 0
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | pid: 141648
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | pgrp: 141648
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | corecount: 8
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | event service: False
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 24: 2284689, 34: 2284845, 34427: 2325928, 34428: 2325927, 34433: 2334977, 34434: 2335033, 344
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | --------------------------------------------------
[2025-11-27 20:16:21] 2025-11-28 01:15:20,781 | INFO     | 
[2025-11-27 20:16:21] 2025-11-28 01:15:20,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 20:16:21] 2025-11-28 01:15:20,833 | INFO     | time since job start (34504s) is within the limit (172800.0s)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:16:21] 2025-11-28 01:15:20,842 | INFO     | job 6898377143 has completed (purged errors)
[2025-11-27 20:16:21] 2025-11-28 01:15:20,843 | INFO     | overall cleanup function is called
[2025-11-27 20:16:21] 2025-11-28 01:15:21,908 | INFO     | --- collectZombieJob: --- 10, [141648]
[2025-11-27 20:16:21] 2025-11-28 01:15:21,909 | INFO     | zombie collector waiting for pid 141648
[2025-11-27 20:16:21] 2025-11-28 01:15:21,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:16:21] 2025-11-28 01:15:21,909 | INFO     | collected zombie processes
[2025-11-27 20:16:21] 2025-11-28 01:15:21,909 | INFO     | will attempt to kill all subprocesses of pid=141648
[2025-11-27 20:16:21] 2025-11-28 01:15:22,906 | INFO     | process IDs to be killed: [141648] (in reverse order)
[2025-11-27 20:16:21] 2025-11-28 01:15:23,168 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:16:21] 2025-11-28 01:15:23,168 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:16:21] 2025-11-28 01:15:23,227 | INFO     | did not find any defunct processes belonging to 141648
[2025-11-27 20:16:21] 2025-11-28 01:15:23,294 | INFO     | did not find any defunct processes belonging to 141648
[2025-11-27 20:16:21] 2025-11-28 01:15:23,299 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:16:21] 2025-11-28 01:15:23,299 | INFO     | ready for new job
[2025-11-27 20:16:21] 2025-11-28 01:15:23,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:16:21] 2025-11-28 01:15:23,302 | INFO     | ***************************************
[2025-11-27 20:16:21] 2025-11-28 01:15:23,302 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:16:21] 2025-11-28 01:15:23,302 | INFO     | ***************************************
[2025-11-27 20:16:21] 2025-11-28 01:15:23,302 | INFO     | 
[2025-11-27 20:16:21] 2025-11-28 01:15:23,313 | INFO     | architecture information:
[2025-11-27 20:16:21] 2025-11-28 01:15:23,316 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:16:21] 2025-11-28 01:15:23,386 | INFO     | cat /etc/os-release:
[2025-11-27 20:16:21] NAME="CentOS Linux"
[2025-11-27 20:16:21] VERSION="7 (Core)"
[2025-11-27 20:16:21] ID="centos"
[2025-11-27 20:16:21] ID_LIKE="rhel fedora"
[2025-11-27 20:16:21] VERSION_ID="7"
[2025-11-27 20:16:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:16:21] ANSI_COLOR="0;31"
[2025-11-27 20:16:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:16:21] HOME_URL="https://www.centos.org/"
[2025-11-27 20:16:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:16:21] 
[2025-11-27 20:16:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:16:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:16:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:16:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:16:21] 
[2025-11-27 20:16:21] 2025-11-28 01:15:23,386 | INFO     | ***************************************
[2025-11-27 20:16:21] 2025-11-28 01:15:23,891 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 20:16:21] 2025-11-28 01:15:23,912 | INFO     | sufficient remaining disk space (67205332992 B)
[2025-11-27 20:16:21] 2025-11-28 01:15:23,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:16:21] 2025-11-28 01:15:23,913 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:16:21] 2025-11-28 01:15:23,913 | INFO     | update_server=False
[2025-11-27 20:16:21] 2025-11-28 01:15:23,913 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:16:21] 2025-11-28 01:15:24,071 | INFO     | all data control threads have been joined
[2025-11-27 20:16:21] 2025-11-28 01:15:24,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:16:21] 2025-11-28 01:15:24,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:21] 2025-11-28 01:15:24,511 | INFO     | aborting loop
[2025-11-27 20:16:21] 2025-11-28 01:15:24,664 | INFO     | all payload control threads have been joined
[2025-11-27 20:16:21] 2025-11-28 01:15:24,677 | INFO     | all job control threads have been joined
[2025-11-27 20:16:21] 2025-11-28 01:15:24,919 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:24,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:16:21] 2025-11-28 01:15:25,079 | INFO     | [data] control thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,268 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,299 | INFO     | [job] validate thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,518 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,585 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,669 | INFO     | [payload] control thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,683 | INFO     | [job] control thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:21] 2025-11-28 01:15:25,812 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:25,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:26,246 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:26,337 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:26,350 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:26,421 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:26,812 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:28,934 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:16:21] 2025-11-28 01:15:55,111 | INFO     | PID=133143 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 20:16:21] 2025-11-28 01:15:55,111 | INFO     | .. there are 53 such processes running
[2025-11-27 20:16:21] 2025-11-28 01:15:55,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:16:21] 2025-11-28 01:15:55,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:16:21] 2025-11-28 01:15:55,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:16:21] 2025-11-28 01:16:14,993 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:16:21] 2025-11-28 01:16:15,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558918309696)>', '<ExcThread(monitor, started 140558408333056)>']
[2025-11-27 20:16:21] 2025-11-28 01:16:16,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:16:21] 2025-11-28 01:16:16,240 | INFO     | [monitor] control thread has ended
[2025-11-27 20:16:21] 2025-11-28 01:16:21,025 | INFO     | all workflow threads have been joined
[2025-11-27 20:16:21] 2025-11-28 01:16:21,025 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:16:21] 2025-11-28 01:16:21,025 | INFO     | traces error code: 0
[2025-11-27 20:16:21] 2025-11-28 01:16:21,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:16:21] 2025-11-28 01:16:21,237 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:16:21] 2025-11-28 01:16:21,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:16:21] 2025-11-28 01:16:21,255 [wrapper] pilotpid: 133143
[2025-11-27 20:16:21] 2025-11-28 01:16:21,259 [wrapper] Pilot exit status: 0
[2025-11-27 20:16:21] 2025-11-28 01:16:21,303 [wrapper] pandaids: 6898377143
[2025-11-27 20:16:21] 2025-11-28 01:16:21,449 [wrapper] cleanup supervisor_pilot 2625598 133144
[2025-11-27 20:16:21] 2025-11-28 01:16:21,453 [wrapper] Test setup, not cleaning
[2025-11-27 20:16:21] 2025-11-28 01:16:21,456 [wrapper] apfmon messages muted
[2025-11-27 20:16:21] 2025-11-28 01:16:21,459 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:16:21] 2025-11-28 01:16:21,462 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:16:21]  *** Error codes and diagnostics ***
[2025-11-27 20:16:21]     "exeErrorCode": 0,
[2025-11-27 20:16:21]     "exeErrorDiag": "",
[2025-11-27 20:16:21]     "pilotErrorCode": 0,
[2025-11-27 20:16:21]     "pilotErrorDiag": "",
[2025-11-27 20:16:21]  *** Listing of results directory ***
[2025-11-27 20:16:21] total 1304664
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:18 queuedata.json
[2025-11-27 20:16:21] -rwx------. 1 boincer umatlas     36292 Nov 26 11:20 runpilot2-wrapper.sh
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas       100 Nov 27 10:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:16:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 10:39 run_atlas
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas       105 Nov 27 10:39 job.xml
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas 410791067 Nov 27 10:39 EVNT.47483658._002573.pool.root.1
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 10:39 start_atlas.sh
[2025-11-27 20:16:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 10:39 shared
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 10:39 input.tar.gz
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas         0 Nov 27 10:39 boinc_lockfile
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 10:39 pandaJob.out
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas        57 Nov 27 10:39 setup.sh.local
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas    991572 Nov 27 10:40 agis_schedconf.cvmfs.json
[2025-11-27 20:16:21] drwx------. 5 boincer umatlas      4096 Nov 27 10:40 pilot3
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas       532 Nov 27 20:06 boinc_task_state.xml
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 20:12 init_data.xml
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas 908690924 Nov 27 20:14 HITS.47556161._005558.pool.root.1
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas      1049 Nov 27 20:14 memory_monitor_summary.json
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas   1822080 Nov 27 20:15 log.47556161._005558.job.log.tgz.1
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas        95 Nov 27 20:15 pilot_heartbeat.json
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas      8591 Nov 27 20:15 heartbeat.json
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:16 wrapper_checkpoint.txt
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas      4823 Nov 27 20:16 pilotlog.txt
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas   4462876 Nov 27 20:16 log.47556161._005558.job.log.1
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas       353 Nov 27 20:16 output.list
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:16 runtime_log
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas   6307840 Nov 27 20:16 result.tar.gz
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas       659 Nov 27 20:16 zGgKDmtQXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq8MKDm3GrMLm.diag
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 20:16 runtime_log.err
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:16 boinc_mmap_file
[2025-11-27 20:16:21] -rw-r--r--. 1 boincer umatlas     21375 Nov 27 20:16 stderr.txt
[2025-11-27 20:16:21] HITS file was successfully produced:
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas 908690924 Nov 27 20:14 shared/HITS.pool.root.1
[2025-11-27 20:16:21]  *** Contents of shared directory: ***
[2025-11-27 20:16:21] total 1295324
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas 410791067 Nov 27 10:39 ATLAS.root_0
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 10:39 start_atlas.sh
[2025-11-27 20:16:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 10:39 input.tar.gz
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas 908690924 Nov 27 20:14 HITS.pool.root.1
[2025-11-27 20:16:21] -rw-------. 1 boincer umatlas   6307840 Nov 27 20:16 result.tar.gz
20:16:23 (126888): run_atlas exited; CPU time 201618.494791
20:16:23 (126888): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN