Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:32:42 (5309): wrapper (7.7.26015): starting
10:32:42 (5309): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 10:32:42] Arguments: --nthreads 12
[2025-11-27 10:32:42] Threads: 12
[2025-11-27 10:32:42] Checking for CVMFS
[2025-11-27 10:32:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:32:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:32:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:32:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:32:42] 2.11.2.0 3009 74573 96560 153371 0 82 19177704 20275201 1 130560 0 30764195 99.915 3874519 34876 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:32:42] CVMFS is ok
[2025-11-27 10:32:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:32:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:32:42] Further information can be found at the LHC@home message board.
[2025-11-27 10:32:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:32:42] Checking for apptainer binary...
[2025-11-27 10:32:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:32:42] Running /usr/bin/apptainer --version
[2025-11-27 10:32:42] apptainer version 1.3.2-1.el7
[2025-11-27 10:32:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:32:44] c-115-42.aglt2.org
[2025-11-27 10:32:44] apptainer works
[2025-11-27 10:32:44] Set ATHENA_PROC_NUMBER=12
[2025-11-27 10:32:44] Set ATHENA_CORE_NUMBER=12
[2025-11-27 10:32:44] Starting ATLAS job with PandaID=6898378312
[2025-11-27 10:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:06:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:06:42] 2025-11-27 22:05:59,879 | INFO     | time since job start (23580s) is within the limit (172800.0s)
[2025-11-27 17:06:42] 2025-11-27 22:05:59,935 | INFO     | monitor loop #1764: job 0:6898378312 is in state 'finished'
[2025-11-27 17:06:42] 2025-11-27 22:05:59,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,502 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:06:42] 2025-11-27 22:06:00,505 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-27 17:06:42] 2025-11-27 22:06:00,507 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378312/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,508 | INFO     | extracted standard info from prmon json
[2025-11-27 17:06:42] 2025-11-27 22:06:00,508 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:06:42] 2025-11-27 22:06:00,508 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:06:42] 2025-11-27 22:06:00,513 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:06:42] 2025-11-27 22:06:00,513 | INFO     | sum of square deviations: 17833858037.927456
[2025-11-27 17:06:42] 2025-11-27 22:06:00,516 | INFO     | sum of deviations: 357049511986.43024
[2025-11-27 17:06:42] 2025-11-27 22:06:00,517 | INFO     | mean x: 1764269350.6943004
[2025-11-27 17:06:42] 2025-11-27 22:06:00,517 | INFO     | mean y: 3775776.2409326425
[2025-11-27 17:06:42] 2025-11-27 22:06:00,517 | INFO     | intersect: -35318447230.03925
[2025-11-27 17:06:42] 2025-11-27 22:06:00,517 | INFO     | chi2: 5.132106766921564
[2025-11-27 17:06:42] 2025-11-27 22:06:00,518 | INFO     | sum of square deviations: 17149802970.236189
[2025-11-27 17:06:42] 2025-11-27 22:06:00,521 | INFO     | sum of deviations: 504085481868.44104
[2025-11-27 17:06:42] 2025-11-27 22:06:00,521 | INFO     | mean x: 1764269198.1968503
[2025-11-27 17:06:42] 2025-11-27 22:06:00,521 | INFO     | mean y: 3808505.3674540683
[2025-11-27 17:06:42] 2025-11-27 22:06:00,521 | INFO     | intersect: -51853492156.46395
[2025-11-27 17:06:42] 2025-11-27 22:06:00,522 | INFO     | chi2: 2.5942166906084987
[2025-11-27 17:06:42] 2025-11-27 22:06:00,522 | INFO     | current chi2=2.5942166906084987 (change=49.451233023263654 %)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,522 | INFO     | sum of square deviations: 16483469165.039923
[2025-11-27 17:06:42] 2025-11-27 22:06:00,525 | INFO     | sum of deviations: 516888799008.94403
[2025-11-27 17:06:42] 2025-11-27 22:06:00,525 | INFO     | mean x: 1764269045.6994681
[2025-11-27 17:06:42] 2025-11-27 22:06:00,525 | INFO     | mean y: 3811384.220744681
[2025-11-27 17:06:42] 2025-11-27 22:06:00,526 | INFO     | intersect: -55320155860.1494
[2025-11-27 17:06:42] 2025-11-27 22:06:00,526 | INFO     | chi2: 2.411963598339869
[2025-11-27 17:06:42] 2025-11-27 22:06:00,526 | INFO     | current chi2=2.411963598339869 (change=7.025361178517459 %)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,526 | INFO     | right removable region: 375
[2025-11-27 17:06:42] 2025-11-27 22:06:00,527 | INFO     | sum of square deviations: 17149757220.23618
[2025-11-27 17:06:42] 2025-11-27 22:06:00,529 | INFO     | sum of deviations: 223195357057.3779
[2025-11-27 17:06:42] 2025-11-27 22:06:00,530 | INFO     | mean x: 1764269503.1968503
[2025-11-27 17:06:42] 2025-11-27 22:06:00,530 | INFO     | mean y: 3805499.648293963
[2025-11-27 17:06:42] 2025-11-27 22:06:00,530 | INFO     | intersect: -22957263666.206684
[2025-11-27 17:06:42] 2025-11-27 22:06:00,530 | INFO     | chi2: 2.851684525841187
[2025-11-27 17:06:42] 2025-11-27 22:06:00,530 | INFO     | current chi2=2.851684525841187 (change=44.43442712023433 %)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,531 | INFO     | sum of square deviations: 16483401027.436127
[2025-11-27 17:06:42] 2025-11-27 22:06:00,534 | INFO     | sum of deviations: 191911801941.13812
[2025-11-27 17:06:42] 2025-11-27 22:06:00,534 | INFO     | mean x: 1764269655.6968086
[2025-11-27 17:06:42] 2025-11-27 22:06:00,534 | INFO     | mean y: 3812650.2819148935
[2025-11-27 17:06:42] 2025-11-27 22:06:00,534 | INFO     | intersect: -20537104128.438854
[2025-11-27 17:06:42] 2025-11-27 22:06:00,535 | INFO     | chi2: 2.8042958460350045
[2025-11-27 17:06:42] 2025-11-27 22:06:00,535 | INFO     | current chi2=2.8042958460350045 (change=1.6617784813417957 %)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,535 | INFO     | left removable region: 20
[2025-11-27 17:06:42] 2025-11-27 22:06:00,535 | INFO     | sum of square deviations: 13872953483.988707
[2025-11-27 17:06:42] 2025-11-27 22:06:00,538 | INFO     | sum of deviations: 315224297876.5691
[2025-11-27 17:06:42] 2025-11-27 22:06:00,538 | INFO     | mean x: 1764269625.2056339
[2025-11-27 17:06:42] 2025-11-27 22:06:00,538 | INFO     | mean y: 3858420.1154929576
[2025-11-27 17:06:42] 2025-11-27 22:06:00,538 | INFO     | intersect: -40084263731.542145
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | chi2: 0.0414056816684902
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | current memory leak: 22.72 B/s (using 355 data points, chi2=0.04)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | could have reported an average CPU frequency of 2527 MHz (17 samples)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | ..............................
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | . Timing measurements:
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | . get job = 0 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,539 | INFO     | . initial setup = 2 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | . payload setup = 7 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | . stage-in = 0 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | . payload execution = 23545 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | . stage-out = 3 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | . log creation = 0 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,540 | INFO     | ..............................
[2025-11-27 17:06:42] 2025-11-27 22:06:00,947 | INFO     | 
[2025-11-27 17:06:42] 2025-11-27 22:06:00,947 | INFO     | job summary report
[2025-11-27 17:06:42] 2025-11-27 22:06:00,947 | INFO     | --------------------------------------------------
[2025-11-27 17:06:42] 2025-11-27 22:06:00,947 | INFO     | PanDA job id: 6898378312
[2025-11-27 17:06:42] 2025-11-27 22:06:00,948 | INFO     | task id: 47556161
[2025-11-27 17:06:42] 2025-11-27 22:06:00,948 | INFO     | errors: (none)
[2025-11-27 17:06:42] 2025-11-27 22:06:00,948 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:06:42] 2025-11-27 22:06:00,948 | INFO     | pilot state: finished 
[2025-11-27 17:06:42] 2025-11-27 22:06:00,949 | INFO     | transexitcode: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:00,949 | INFO     | exeerrorcode: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:00,949 | INFO     | exeerrordiag: 
[2025-11-27 17:06:42] 2025-11-27 22:06:00,949 | INFO     | exitcode: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:00,949 | INFO     | exitmsg: OK
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | cpuconsumptiontime: 271357 s
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | nevents: 1000
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | neventsw: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | pid: 15473
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | pgrp: 15473
[2025-11-27 17:06:42] 2025-11-27 22:06:00,950 | INFO     | corecount: 12
[2025-11-27 17:06:42] 2025-11-27 22:06:00,951 | INFO     | event service: False
[2025-11-27 17:06:42] 2025-11-27 22:06:00,951 | INFO     | sizes: {0: 2283482, 1: 2284338, 6: 2284600, 12: 2284628, 23556: 2320638, 23560: 2329816, 23566: 2330070}
[2025-11-27 17:06:42] 2025-11-27 22:06:00,951 | INFO     | --------------------------------------------------
[2025-11-27 17:06:42] 2025-11-27 22:06:00,951 | INFO     | 
[2025-11-27 17:06:42] 2025-11-27 22:06:00,951 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 17:06:42] 2025-11-27 22:06:01,004 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:06:42] 2025-11-27 22:06:01,007 | INFO     | job 6898378312 has completed (purged errors)
[2025-11-27 17:06:42] 2025-11-27 22:06:01,008 | INFO     | overall cleanup function is called
[2025-11-27 17:06:42] 2025-11-27 22:06:01,032 | INFO     | PID=9051 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 17:06:42] 2025-11-27 22:06:02,028 | INFO     | --- collectZombieJob: --- 10, [15473]
[2025-11-27 17:06:42] 2025-11-27 22:06:02,028 | INFO     | zombie collector waiting for pid 15473
[2025-11-27 17:06:42] 2025-11-27 22:06:02,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:06:42] 2025-11-27 22:06:02,029 | INFO     | collected zombie processes
[2025-11-27 17:06:42] 2025-11-27 22:06:02,029 | INFO     | will attempt to kill all subprocesses of pid=15473
[2025-11-27 17:06:42] 2025-11-27 22:06:02,117 | INFO     | process IDs to be killed: [15473] (in reverse order)
[2025-11-27 17:06:42] 2025-11-27 22:06:02,169 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:06:42] 2025-11-27 22:06:02,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:06:42] 2025-11-27 22:06:02,174 | INFO     | did not find any defunct processes belonging to 15473
[2025-11-27 17:06:42] 2025-11-27 22:06:02,177 | INFO     | did not find any defunct processes belonging to 15473
[2025-11-27 17:06:42] 2025-11-27 22:06:02,178 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:06:42] 2025-11-27 22:06:02,179 | INFO     | ready for new job
[2025-11-27 17:06:42] 2025-11-27 22:06:02,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:06:42] 2025-11-27 22:06:02,181 | INFO     | ***************************************
[2025-11-27 17:06:42] 2025-11-27 22:06:02,181 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:06:42] 2025-11-27 22:06:02,181 | INFO     | ***************************************
[2025-11-27 17:06:42] 2025-11-27 22:06:02,181 | INFO     | 
[2025-11-27 17:06:42] 2025-11-27 22:06:02,181 | INFO     | architecture information:
[2025-11-27 17:06:42] 2025-11-27 22:06:02,182 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:06:42] 2025-11-27 22:06:02,196 | INFO     | cat /etc/os-release:
[2025-11-27 17:06:42] NAME="CentOS Linux"
[2025-11-27 17:06:42] VERSION="7 (Core)"
[2025-11-27 17:06:42] ID="centos"
[2025-11-27 17:06:42] ID_LIKE="rhel fedora"
[2025-11-27 17:06:42] VERSION_ID="7"
[2025-11-27 17:06:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:06:42] ANSI_COLOR="0;31"
[2025-11-27 17:06:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:06:42] HOME_URL="https://www.centos.org/"
[2025-11-27 17:06:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:06:42] 
[2025-11-27 17:06:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:06:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:06:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:06:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:06:42] 
[2025-11-27 17:06:42] 2025-11-27 22:06:02,197 | INFO     | ***************************************
[2025-11-27 17:06:42] 2025-11-27 22:06:02,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 17:06:42] 2025-11-27 22:06:02,716 | INFO     | sufficient remaining disk space (17468227584 B)
[2025-11-27 17:06:42] 2025-11-27 22:06:02,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:06:42] 2025-11-27 22:06:02,717 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:06:42] 2025-11-27 22:06:02,717 | INFO     | update_server=False
[2025-11-27 17:06:42] 2025-11-27 22:06:02,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:06:42] 2025-11-27 22:06:02,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:06:42] 2025-11-27 22:06:02,827 | INFO     | all payload control threads have been joined
[2025-11-27 17:06:42] 2025-11-27 22:06:03,434 | INFO     | all data control threads have been joined
[2025-11-27 17:06:42] 2025-11-27 22:06:03,449 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:06:42] 2025-11-27 22:06:03,449 | INFO     | aborting loop
[2025-11-27 17:06:42] 2025-11-27 22:06:03,723 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:03,749 | INFO     | all job control threads have been joined
[2025-11-27 17:06:42] 2025-11-27 22:06:03,757 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:03,832 | INFO     | [payload] control thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:03,894 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,034 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,063 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,439 | INFO     | [data] control thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,455 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,723 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,754 | INFO     | [job] control thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,783 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:04,963 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:05,028 | INFO     | [job] validate thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:05,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:06:42] 2025-11-27 22:06:05,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:06:42] 2025-11-27 22:06:06,624 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:09,281 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:06:42] 2025-11-27 22:06:33,227 | INFO     | PID=9051 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 17:06:42] 2025-11-27 22:06:33,227 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:06:42] 2025-11-27 22:06:33,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:06:42] 2025-11-27 22:06:33,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:06:42] 2025-11-27 22:06:37,343 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:06:42] 2025-11-27 22:06:37,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212558407488)>', '<ExcThread(monitor, started 140211682010880)>']
[2025-11-27 17:06:42] 2025-11-27 22:06:38,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:06:42] 2025-11-27 22:06:38,249 | INFO     | [monitor] control thread has ended
[2025-11-27 17:06:42] 2025-11-27 22:06:42,594 | INFO     | all workflow threads have been joined
[2025-11-27 17:06:42] 2025-11-27 22:06:42,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:06:42] 2025-11-27 22:06:42,594 | INFO     | traces error code: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:42,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:06:42] 2025-11-27 22:06:42,672 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:06:42] 2025-11-27 22:06:42,675 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:06:42] 2025-11-27 22:06:42,679 [wrapper] pilotpid: 9051
[2025-11-27 17:06:42] 2025-11-27 22:06:42,683 [wrapper] Pilot exit status: 0
[2025-11-27 17:06:42] 2025-11-27 22:06:42,696 [wrapper] pandaids: 6898378312
[2025-11-27 17:06:42] 2025-11-27 22:06:42,742 [wrapper] cleanup supervisor_pilot  6703 9052
[2025-11-27 17:06:42] 2025-11-27 22:06:42,745 [wrapper] Test setup, not cleaning
[2025-11-27 17:06:42] 2025-11-27 22:06:42,749 [wrapper] apfmon messages muted
[2025-11-27 17:06:42] 2025-11-27 22:06:42,753 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:06:42] 2025-11-27 22:06:42,757 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:06:42]  *** Error codes and diagnostics ***
[2025-11-27 17:06:42]     "exeErrorCode": 0,
[2025-11-27 17:06:42]     "exeErrorDiag": "",
[2025-11-27 17:06:42]     "pilotErrorCode": 0,
[2025-11-27 17:06:42]     "pilotErrorDiag": "",
[2025-11-27 17:06:42]  *** Listing of results directory ***
[2025-11-27 17:06:42] total 1313352
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:35 queuedata.json
[2025-11-27 17:06:42] -rwx------ 1 boincer umatlas     36292 Nov 26 11:35 runpilot2-wrapper.sh
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas       100 Nov 27 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:06:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 10:32 run_atlas
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas       105 Nov 27 10:32 job.xml
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas 410244620 Nov 27 10:32 EVNT.47483658._002603.pool.root.1
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:32 start_atlas.sh
[2025-11-27 17:06:42] drwxrwx--x 2 boincer umatlas      4096 Nov 27 10:32 shared
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 10:32 input.tar.gz
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas         0 Nov 27 10:32 boinc_lockfile
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 10:32 pandaJob.out
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas        57 Nov 27 10:32 setup.sh.local
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas    991572 Nov 27 10:32 agis_schedconf.cvmfs.json
[2025-11-27 17:06:42] drwx------ 5 boincer umatlas      4096 Nov 27 10:32 pilot3
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas       532 Nov 27 16:58 boinc_task_state.xml
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas      5955 Nov 27 17:04 init_data.xml
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas 919793017 Nov 27 17:05 HITS.47556161._005851.pool.root.1
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas        95 Nov 27 17:05 pilot_heartbeat.json
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas      1062 Nov 27 17:05 memory_monitor_summary.json
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas   1516240 Nov 27 17:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas   2156726 Nov 27 17:05 log.47556161._005851.job.log.tgz.1
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas      8675 Nov 27 17:06 heartbeat.json
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:06 wrapper_checkpoint.txt
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:06 boinc_mmap_file
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas      4745 Nov 27 17:06 pilotlog.txt
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas   3300883 Nov 27 17:06 log.47556161._005851.job.log.1
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas       353 Nov 27 17:06 output.list
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:06 runtime_log
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas   5478400 Nov 27 17:06 result.tar.gz
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 17:06 runtime_log.err
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas       670 Nov 27 17:06 MdPLDmnfXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmo2JKDmwRMhnm.diag
[2025-11-27 17:06:42] -rw-r--r-- 1 boincer umatlas     21420 Nov 27 17:06 stderr.txt
[2025-11-27 17:06:42] HITS file was successfully produced:
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas 919793017 Nov 27 17:05 shared/HITS.pool.root.1
[2025-11-27 17:06:42]  *** Contents of shared directory: ***
[2025-11-27 17:06:42] total 1304820
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas 410244620 Nov 27 10:32 ATLAS.root_0
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:32 start_atlas.sh
[2025-11-27 17:06:42] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 10:32 input.tar.gz
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas 919793017 Nov 27 17:05 HITS.pool.root.1
[2025-11-27 17:06:42] -rw------- 1 boincer umatlas   5478400 Nov 27 17:06 result.tar.gz
17:06:44 (5309): run_atlas exited; CPU time 266334.277421
17:06:44 (5309): called boinc_finish(0)

</stderr_txt>
]]>

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