Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:05:07 (15474): wrapper (7.7.26015): starting
16:05:07 (15474): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 16:05:07] Arguments: --nthreads 3
[2025-11-27 16:05:07] Threads: 3
[2025-11-27 16:05:07] Checking for CVMFS
[2025-11-27 16:05:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:05:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:05:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:05:08] 2.9.2.0 3252557 446 69704 153368 0 129 36027674 36864001 0 130560 0 2854367 99.999 18593 11760 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 16:05:08] CVMFS is ok
[2025-11-27 16:05:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:05:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:05:08] Further information can be found at the LHC@home message board.
[2025-11-27 16:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:05:08] Checking for apptainer binary...
[2025-11-27 16:05:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:05:08] Running /usr/bin/apptainer --version
[2025-11-27 16:05:08] apptainer version 1.4.1-1.1
[2025-11-27 16:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:05:08] thA335
[2025-11-27 16:05:08] apptainer works
[2025-11-27 16:05:08] Set ATHENA_PROC_NUMBER=3
[2025-11-27 16:05:08] Set ATHENA_CORE_NUMBER=3
[2025-11-27 16:05:08] Starting ATLAS job with PandaID=6898377711
[2025-11-27 16:05:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:09:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:09:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:09:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:09:27] 
[2025-11-27 16:09:27] 2025-11-27 15:08:34,881 | INFO     | ***************************************
[2025-11-27 16:09:27] 2025-11-27 15:08:35,384 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 16:09:27] 2025-11-27 15:08:35,398 | INFO     | sufficient remaining disk space (826802176000 B)
[2025-11-27 16:09:27] 2025-11-27 15:08:35,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:09:27] 2025-11-27 15:08:35,398 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:09:27] 2025-11-27 15:08:35,398 | INFO     | update_server=False
[2025-11-27 16:09:27] 2025-11-27 15:08:35,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:09:27] 2025-11-27 15:08:35,399 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:09:27] 2025-11-27 15:08:35,399 | INFO     | aborting loop
[2025-11-27 16:09:27] 2025-11-27 15:08:35,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:09:27] 2025-11-27 15:08:35,407 | INFO     | all data control threads have been joined
[2025-11-27 16:09:27] 2025-11-27 15:08:35,685 | INFO     | all job control threads have been joined
[2025-11-27 16:09:27] 2025-11-27 15:08:36,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:09:27] 2025-11-27 15:08:36,404 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,405 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,405 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,413 | INFO     | [data] control thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,437 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,691 | INFO     | [job] control thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:36,800 | INFO     | all payload control threads have been joined
[2025-11-27 16:09:27] 2025-11-27 15:08:36,837 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,431 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,806 | INFO     | [payload] control thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,816 | INFO     | [job] validate thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,880 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:37,966 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:38,083 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:08:38,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:09:27] 2025-11-27 15:08:42,508 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:09:27] 2025-11-27 15:09:06,045 | INFO     | PID=19211 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:09:27] 2025-11-27 15:09:06,045 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:09:27] 2025-11-27 15:09:06,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:09:27] 2025-11-27 15:09:06,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:09:27] 2025-11-27 15:09:21,005 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:09:27] 2025-11-27 15:09:22,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140460759050048)>', '<ExcThread(monitor, started 140460119025408)>']
[2025-11-27 16:09:27] 2025-11-27 15:09:23,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:09:27] 2025-11-27 15:09:23,145 | INFO     | [monitor] control thread has ended
[2025-11-27 16:09:27] 2025-11-27 15:09:27,189 | INFO     | all workflow threads have been joined
[2025-11-27 16:09:27] 2025-11-27 15:09:27,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:09:27] 2025-11-27 15:09:27,190 | INFO     | traces error code: 0
[2025-11-27 16:09:27] 2025-11-27 15:09:27,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:09:27] 2025-11-27 15:09:27,277 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:09:27] 2025-11-27 15:09:27,280 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:09:27] 2025-11-27 15:09:27,282 [wrapper] pilotpid: 19211
[2025-11-27 16:09:27] 2025-11-27 15:09:27,285 [wrapper] Pilot exit status: 0
[2025-11-27 16:09:27] 2025-11-27 15:09:27,293 [wrapper] pandaids: 6898377711
[2025-11-27 16:09:27] 2025-11-27 15:09:27,317 [wrapper] cleanup supervisor_pilot   19217 19212
[2025-11-27 16:09:27] 2025-11-27 15:09:27,321 [wrapper] Test setup, not cleaning
[2025-11-27 16:09:27] 2025-11-27 15:09:27,325 [wrapper] apfmon messages muted
[2025-11-27 16:09:27] 2025-11-27 15:09:27,328 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:09:27] 2025-11-27 15:09:27,332 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:09:27]  *** Error codes and diagnostics ***
[2025-11-27 16:09:27]     "exeErrorCode": 65,
[2025-11-27 16:09:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:09:27]     "pilotErrorCode": 1305,
[2025-11-27 16:09:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:09:27]  *** Listing of results directory ***
[2025-11-27 16:09:27] total 402232
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-27 16:09:27] -rwx------ 1 boinc boinc     36292 Nov 26 17:29 runpilot2-wrapper.sh
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:29 queuedata.json
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc       100 Nov 27 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:09:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 16:05 run_atlas
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc       105 Nov 27 16:05 job.xml
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc 407695198 Nov 27 16:05 EVNT.47483658._002576.pool.root.1
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc    590106 Nov 27 16:05 input.tar.gz
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:05 start_atlas.sh
[2025-11-27 16:09:27] drwxrwx--x 2 boinc boinc      4096 Nov 27 16:05 shared
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:05 boinc_setup_complete
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      6196 Nov 27 16:05 init_data.xml
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:05 boinc_lockfile
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      2786 Nov 27 16:05 pandaJob.out
[2025-11-27 16:09:27] -rw------- 1 boinc boinc    991580 Nov 27 16:05 agis_schedconf.cvmfs.json
[2025-11-27 16:09:27] -rw------- 1 boinc boinc   1516240 Nov 27 16:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:09:27] drwx------ 5 boinc boinc      4096 Nov 27 16:05 pilot3
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc       523 Nov 27 16:06 boinc_task_state.xml
[2025-11-27 16:09:27] -rw------- 1 boinc boinc       956 Nov 27 16:06 memory_monitor_summary.json
[2025-11-27 16:09:27] -rw------- 1 boinc boinc     55714 Nov 27 16:06 log.47556161._005582.job.log.tgz.1
[2025-11-27 16:09:27] -rw------- 1 boinc boinc        95 Nov 27 16:08 pilot_heartbeat.json
[2025-11-27 16:09:27] -rw------- 1 boinc boinc      8402 Nov 27 16:08 heartbeat.json
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc        23 Nov 27 16:09 wrapper_checkpoint.txt
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:09 boinc_mmap_file
[2025-11-27 16:09:27] -rw------- 1 boinc boinc      4750 Nov 27 16:09 pilotlog.txt
[2025-11-27 16:09:27] -rw------- 1 boinc boinc     93176 Nov 27 16:09 log.47556161._005582.job.log.1
[2025-11-27 16:09:27] -rw------- 1 boinc boinc       186 Nov 27 16:09 output.list
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:09 runtime_log
[2025-11-27 16:09:27] -rw------- 1 boinc boinc    163840 Nov 27 16:09 result.tar.gz
[2025-11-27 16:09:27] -rw------- 1 boinc boinc       648 Nov 27 16:09 vw5LDmsZXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj1JKDmdEubEo.diag
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      8744 Nov 27 16:09 runtime_log.err
[2025-11-27 16:09:27] -rw-r--r-- 1 boinc boinc      8464 Nov 27 16:09 stderr.txt
[2025-11-27 16:09:27] No HITS result produced
[2025-11-27 16:09:27]  *** Contents of shared directory: ***
[2025-11-27 16:09:27] total 398900
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc 407695198 Nov 27 16:05 ATLAS.root_0
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc    590106 Nov 27 16:05 input.tar.gz
[2025-11-27 16:09:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:05 start_atlas.sh
[2025-11-27 16:09:27] -rw------- 1 boinc boinc    163840 Nov 27 16:09 result.tar.gz
16:09:28 (15474): run_atlas exited; CPU time 31.654725
16:09:28 (15474): called boinc_finish(0)

</stderr_txt>
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