Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:43:16 (4105206): wrapper (7.7.26015): starting
15:43:16 (4105206): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 15:43:16] Arguments: --nthreads 3
[2025-11-27 15:43:16] Threads: 3
[2025-11-27 15:43:16] Checking for CVMFS
[2025-11-27 15:43:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:43:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:43:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:43:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:43:17] 2.9.2.0 3252557 424 69212 153368 2 129 36025421 36864001 0 130560 0 2541375 99.999 18590 11840 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 15:43:17] CVMFS is ok
[2025-11-27 15:43:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 15:43:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 15:43:17] Further information can be found at the LHC@home message board.
[2025-11-27 15:43:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:43:17] Checking for apptainer binary...
[2025-11-27 15:43:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:43:17] Running /usr/bin/apptainer --version
[2025-11-27 15:43:17] apptainer version 1.4.1-1.1
[2025-11-27 15:43:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:43:17] thA335
[2025-11-27 15:43:17] apptainer works
[2025-11-27 15:43:17] Set ATHENA_PROC_NUMBER=3
[2025-11-27 15:43:17] Set ATHENA_CORE_NUMBER=3
[2025-11-27 15:43:17] Starting ATLAS job with PandaID=6898377073
[2025-11-27 15:43:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:47:33]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:47:33] 2025-11-27 14:46:45,384 | INFO     | update_server=False
[2025-11-27 15:47:33] 2025-11-27 14:46:45,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:47:33] 2025-11-27 14:46:45,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:47:33] 2025-11-27 14:46:45,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:47:33] 2025-11-27 14:46:45,415 | INFO     | aborting loop
[2025-11-27 15:47:33] 2025-11-27 14:46:46,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:47:33] 2025-11-27 14:46:46,305 | INFO     | all job control threads have been joined
[2025-11-27 15:47:33] 2025-11-27 14:46:46,386 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:46,390 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:46,421 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:46,440 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:46,460 | INFO     | all data control threads have been joined
[2025-11-27 15:47:33] 2025-11-27 14:46:46,889 | INFO     | all payload control threads have been joined
[2025-11-27 15:47:33] 2025-11-27 14:46:46,949 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,311 | INFO     | [job] control thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,466 | INFO     | [data] control thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,619 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,749 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,759 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,802 | INFO     | [job] validate thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,879 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:47,895 | INFO     | [payload] control thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:48,208 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:46:48,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:47:33] 2025-11-27 14:46:52,507 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:47:33] 2025-11-27 14:47:15,491 | INFO     | PID=4108926 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:47:33] 2025-11-27 14:47:15,492 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:47:33] 2025-11-27 14:47:15,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:47:33] 2025-11-27 14:47:15,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:47:33] 2025-11-27 14:47:26,529 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:47:33] 2025-11-27 14:47:28,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648510289728)>', '<ExcThread(monitor, started 140648007059200)>']
[2025-11-27 15:47:33] 2025-11-27 14:47:28,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:47:33] 2025-11-27 14:47:28,561 | INFO     | [monitor] control thread has ended
[2025-11-27 15:47:33] 2025-11-27 14:47:33,383 | INFO     | all workflow threads have been joined
[2025-11-27 15:47:33] 2025-11-27 14:47:33,383 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:47:33] 2025-11-27 14:47:33,384 | INFO     | traces error code: 0
[2025-11-27 15:47:33] 2025-11-27 14:47:33,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:47:33] 2025-11-27 14:47:33,431 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:47:33] 2025-11-27 14:47:33,434 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:47:33] 2025-11-27 14:47:33,437 [wrapper] pilotpid: 4108926
[2025-11-27 15:47:33] 2025-11-27 14:47:33,440 [wrapper] Pilot exit status: 0
[2025-11-27 15:47:33] 2025-11-27 14:47:33,447 [wrapper] pandaids: 6898377073
[2025-11-27 15:47:33] 2025-11-27 14:47:33,465 [wrapper] cleanup supervisor_pilot 4108932 4108927
[2025-11-27 15:47:33] 2025-11-27 14:47:33,468 [wrapper] Test setup, not cleaning
[2025-11-27 15:47:33] 2025-11-27 14:47:33,470 [wrapper] apfmon messages muted
[2025-11-27 15:47:33] 2025-11-27 14:47:33,473 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:47:33] 2025-11-27 14:47:33,475 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:47:33]  *** Error codes and diagnostics ***
[2025-11-27 15:47:33]     "exeErrorCode": 65,
[2025-11-27 15:47:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:47:33]     "pilotErrorCode": 1305,
[2025-11-27 15:47:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:47:33]  *** Listing of results directory ***
[2025-11-27 15:47:33] total 406956
[2025-11-27 15:47:33] -rwx------ 1 boinc boinc     36292 Nov 26 17:12 runpilot2-wrapper.sh
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:12 queuedata.json
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:47:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:43 run_atlas
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:43 job.xml
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc 412522581 Nov 27 15:43 EVNT.47483658._002567.pool.root.1
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc    590100 Nov 27 15:43 input.tar.gz
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:43 start_atlas.sh
[2025-11-27 15:47:33] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:43 shared
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:43 boinc_setup_complete
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      6196 Nov 27 15:43 init_data.xml
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:43 boinc_lockfile
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      2786 Nov 27 15:43 pandaJob.out
[2025-11-27 15:47:33] -rw------- 1 boinc boinc    991580 Nov 27 15:43 agis_schedconf.cvmfs.json
[2025-11-27 15:47:33] -rw------- 1 boinc boinc   1516240 Nov 27 15:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:47:33] drwx------ 5 boinc boinc      4096 Nov 27 15:43 pilot3
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc       522 Nov 27 15:44 boinc_task_state.xml
[2025-11-27 15:47:33] -rw------- 1 boinc boinc       939 Nov 27 15:44 memory_monitor_summary.json
[2025-11-27 15:47:33] -rw------- 1 boinc boinc     55621 Nov 27 15:44 log.47556161._005495.job.log.tgz.1
[2025-11-27 15:47:33] -rw------- 1 boinc boinc        95 Nov 27 15:46 pilot_heartbeat.json
[2025-11-27 15:47:33] -rw------- 1 boinc boinc      8401 Nov 27 15:46 heartbeat.json
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc        22 Nov 27 15:47 wrapper_checkpoint.txt
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:47 boinc_mmap_file
[2025-11-27 15:47:33] -rw------- 1 boinc boinc      4752 Nov 27 15:47 pilotlog.txt
[2025-11-27 15:47:33] -rw------- 1 boinc boinc     93788 Nov 27 15:47 log.47556161._005495.job.log.1
[2025-11-27 15:47:33] -rw------- 1 boinc boinc       186 Nov 27 15:47 output.list
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:47 runtime_log
[2025-11-27 15:47:33] -rw------- 1 boinc boinc    174080 Nov 27 15:47 result.tar.gz
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      8744 Nov 27 15:47 runtime_log.err
[2025-11-27 15:47:33] -rw------- 1 boinc boinc       649 Nov 27 15:47 mZENDmyIXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv7MKDmaUdBvn.diag
[2025-11-27 15:47:33] -rw-r--r-- 1 boinc boinc      7791 Nov 27 15:47 stderr.txt
[2025-11-27 15:47:33] No HITS result produced
[2025-11-27 15:47:33]  *** Contents of shared directory: ***
[2025-11-27 15:47:33] total 403628
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc 412522581 Nov 27 15:43 ATLAS.root_0
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc    590100 Nov 27 15:43 input.tar.gz
[2025-11-27 15:47:33] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:43 start_atlas.sh
[2025-11-27 15:47:33] -rw------- 1 boinc boinc    174080 Nov 27 15:47 result.tar.gz
15:47:34 (4105206): run_atlas exited; CPU time 31.313610
15:47:34 (4105206): called boinc_finish(0)

</stderr_txt>
]]>

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