Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:01:04 (2312648): wrapper (7.7.26015): starting
11:01:04 (2312648): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:01:04] Arguments: --nthreads 8
[2025-11-27 11:01:04] Threads: 8
[2025-11-27 11:01:04] Checking for CVMFS
[2025-11-27 11:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:01:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:01:05] 2.13.3.0 12548 31700 355780 153372 2 141 39262503 40960000 32049 16776704 34 161383711 99.638 145992250 35420 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 11:01:05] CVMFS is ok
[2025-11-27 11:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:01:05] Further information can be found at the LHC@home message board.
[2025-11-27 11:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:01:05] Checking for apptainer binary...
[2025-11-27 11:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:01:05] Running /usr/bin/apptainer --version
[2025-11-27 11:01:05] apptainer version 1.4.4-1.el9
[2025-11-27 11:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:01:06] c7-11-12.aglt2.org
[2025-11-27 11:01:06] apptainer works
[2025-11-27 11:01:06] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:01:06] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:01:06] Starting ATLAS job with PandaID=6898376964
[2025-11-27 11:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:08:24]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:08:24] 2025-11-28 08:37:13,499 | INFO     | time since job start (59718s) is within the limit (172800.0s)
[2025-11-28 05:08:24] 2025-11-28 08:37:14,163 | INFO     | monitor loop #3780: job 0:6898376964 is in state 'finished'
[2025-11-28 05:08:24] 2025-11-28 08:37:14,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:08:24] 2025-11-28 08:37:14,861 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:08:24] 2025-11-28 08:37:14,865 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.057421875001
[2025-11-28 05:08:24] 2025-11-28 08:37:14,875 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898376964/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:08:24] 2025-11-28 08:37:14,875 | INFO     | extracted standard info from prmon json
[2025-11-28 05:08:24] 2025-11-28 08:37:14,876 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:08:24] 2025-11-28 08:37:14,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:08:24] 2025-11-28 08:37:14,950 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:08:24] 2025-11-28 08:37:14,952 | INFO     | sum of square deviations: 290113379243.7915
[2025-11-28 05:08:24] 2025-11-28 08:37:14,970 | INFO     | sum of deviations: 1957371935110.6072
[2025-11-28 05:08:24] 2025-11-28 08:37:14,970 | INFO     | mean x: 1764289197.582822
[2025-11-28 05:08:24] 2025-11-28 08:37:14,970 | INFO     | mean y: 2941155.381390593
[2025-11-28 05:08:24] 2025-11-28 08:37:14,970 | INFO     | intersect: -11900577978.306864
[2025-11-28 05:08:24] 2025-11-28 08:37:14,971 | INFO     | chi2: 6.746515029684211
[2025-11-28 05:08:24] 2025-11-28 08:37:14,972 | INFO     | sum of square deviations: 285687861704.48926
[2025-11-28 05:08:24] 2025-11-28 08:37:14,989 | INFO     | sum of deviations: 2316567878093.182
[2025-11-28 05:08:24] 2025-11-28 08:37:14,989 | INFO     | mean x: 1764289045.0935252
[2025-11-28 05:08:24] 2025-11-28 08:37:14,989 | INFO     | mean y: 2953532.536485098
[2025-11-28 05:08:24] 2025-11-28 08:37:14,989 | INFO     | intersect: -14303203211.928133
[2025-11-28 05:08:24] 2025-11-28 08:37:14,990 | INFO     | chi2: 3.1942502575987994
[2025-11-28 05:08:24] 2025-11-28 08:37:14,990 | INFO     | current chi2=3.1942502575987994 (change=52.65332925896832 %)
[2025-11-28 05:08:24] 2025-11-28 08:37:14,991 | INFO     | sum of square deviations: 281305942092.49457
[2025-11-28 05:08:24] 2025-11-28 08:37:15,008 | INFO     | sum of deviations: 2379223660160.0713
[2025-11-28 05:08:24] 2025-11-28 08:37:15,008 | INFO     | mean x: 1764288892.5754132
[2025-11-28 05:08:24] 2025-11-28 08:37:15,008 | INFO     | mean y: 2955706.2045454546
[2025-11-28 05:08:24] 2025-11-28 08:37:15,008 | INFO     | intersect: -14919010909.03614
[2025-11-28 05:08:24] 2025-11-28 08:37:15,009 | INFO     | chi2: 2.857699567572692
[2025-11-28 05:08:24] 2025-11-28 08:37:15,009 | INFO     | current chi2=2.857699567572692 (change=10.536140342338147 %)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,009 | INFO     | right removable region: 967
[2025-11-28 05:08:24] 2025-11-28 08:37:15,010 | INFO     | sum of square deviations: 285686678551.6752
[2025-11-28 05:08:24] 2025-11-28 08:37:15,027 | INFO     | sum of deviations: 1655856188277.0225
[2025-11-28 05:08:24] 2025-11-28 08:37:15,028 | INFO     | mean x: 1764289350.0924973
[2025-11-28 05:08:24] 2025-11-28 08:37:15,028 | INFO     | mean y: 2951531.4552929085
[2025-11-28 05:08:24] 2025-11-28 08:37:15,028 | INFO     | intersect: -10222969582.796036
[2025-11-28 05:08:24] 2025-11-28 08:37:15,029 | INFO     | chi2: 4.092954422883792
[2025-11-28 05:08:24] 2025-11-28 08:37:15,029 | INFO     | current chi2=4.092954422883792 (change=39.332315945713184 %)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,030 | INFO     | sum of square deviations: 281305472190.6767
[2025-11-28 05:08:24] 2025-11-28 08:37:15,047 | INFO     | sum of deviations: 1592451916344.2551
[2025-11-28 05:08:24] 2025-11-28 08:37:15,047 | INFO     | mean x: 1764289502.5981405
[2025-11-28 05:08:24] 2025-11-28 08:37:15,047 | INFO     | mean y: 2953737.6973140496
[2025-11-28 05:08:24] 2025-11-28 08:37:15,047 | INFO     | intersect: -9984573975.571175
[2025-11-28 05:08:24] 2025-11-28 08:37:15,048 | INFO     | chi2: 4.055501483606651
[2025-11-28 05:08:24] 2025-11-28 08:37:15,048 | INFO     | current chi2=4.055501483606651 (change=0.9150587914622357 %)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,048 | INFO     | left removable region: 20
[2025-11-28 05:08:24] 2025-11-28 08:37:15,049 | INFO     | sum of square deviations: 263392993075.3706
[2025-11-28 05:08:24] 2025-11-28 08:37:15,065 | INFO     | sum of deviations: 1906916418568.4463
[2025-11-28 05:08:24] 2025-11-28 08:37:15,065 | INFO     | mean x: 1764289472.0897572
[2025-11-28 05:08:24] 2025-11-28 08:37:15,065 | INFO     | mean y: 2972093.241816262
[2025-11-28 05:08:24] 2025-11-28 08:37:15,065 | INFO     | intersect: -12770156463.267263
[2025-11-28 05:08:24] 2025-11-28 08:37:15,066 | INFO     | chi2: 0.10482895591426186
[2025-11-28 05:08:24] 2025-11-28 08:37:15,066 | INFO     | current memory leak: 7.24 B/s (using 947 data points, chi2=0.10)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,067 | INFO     | could have reported an average CPU frequency of 3282 MHz (36 samples)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,067 | INFO     | ..............................
[2025-11-28 05:08:24] 2025-11-28 08:37:15,067 | INFO     | . Timing measurements:
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . get job = 0 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . initial setup = 6 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . payload setup = 25 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . stage-in = 0 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . payload execution = 59627 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . stage-out = 6 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | . log creation = 1 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,068 | INFO     | ..............................
[2025-11-28 05:08:24] 2025-11-28 08:37:15,139 | INFO     | 
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | job summary report
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | --------------------------------------------------
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | PanDA job id: 6898376964
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | task id: 47556161
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | errors: (none)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | pilot state: finished 
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | transexitcode: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | exeerrorcode: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | exeerrordiag: 
[2025-11-28 05:08:24] 2025-11-28 08:37:15,147 | INFO     | exitcode: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | exitmsg: OK
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | cpuconsumptiontime: 191678 s
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | nevents: 1000
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | neventsw: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | pid: 2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | pgrp: 2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | corecount: 8
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | event service: False
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | sizes: {0: 2283436, 1: 2284292, 12: 2284292, 15: 2284582, 23: 2284610, 59656: 2337589, 59663: 2346583, 59667: 2346639, 59683: 2346885}
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | --------------------------------------------------
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | 
[2025-11-28 05:08:24] 2025-11-28 08:37:15,148 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:08:24] 2025-11-28 08:37:15,267 | INFO     | job 6898376964 has completed (purged errors)
[2025-11-28 05:08:24] 2025-11-28 08:37:15,268 | INFO     | overall cleanup function is called
[2025-11-28 05:08:24] 2025-11-28 08:37:16,286 | INFO     | --- collectZombieJob: --- 10, [2324293]
[2025-11-28 05:08:24] 2025-11-28 08:37:16,286 | INFO     | zombie collector waiting for pid 2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:16,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:08:24] 2025-11-28 08:37:16,286 | INFO     | collected zombie processes
[2025-11-28 05:08:24] 2025-11-28 08:37:16,286 | INFO     | will attempt to kill all subprocesses of pid=2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:16,934 | INFO     | process IDs to be killed: [2324293] (in reverse order)
[2025-11-28 05:08:24] 2025-11-28 08:37:17,138 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:08:24] 2025-11-28 08:37:17,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:08:24] 2025-11-28 08:37:17,185 | INFO     | did not find any defunct processes belonging to 2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:17,208 | INFO     | did not find any defunct processes belonging to 2324293
[2025-11-28 05:08:24] 2025-11-28 08:37:17,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:08:24] 2025-11-28 08:37:17,209 | INFO     | ready for new job
[2025-11-28 05:08:24] 2025-11-28 08:37:17,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:08:24] 2025-11-28 08:37:17,214 | INFO     | ***************************************
[2025-11-28 05:08:24] 2025-11-28 08:37:17,214 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:08:24] 2025-11-28 08:37:17,214 | INFO     | ***************************************
[2025-11-28 05:08:24] 2025-11-28 08:37:17,215 | INFO     | 
[2025-11-28 05:08:24] 2025-11-28 08:37:17,218 | INFO     | architecture information:
[2025-11-28 05:08:24] 2025-11-28 08:37:17,219 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:08:24] 2025-11-28 08:37:17,281 | INFO     | cat /etc/os-release:
[2025-11-28 05:08:24] NAME="CentOS Linux"
[2025-11-28 05:08:24] VERSION="7 (Core)"
[2025-11-28 05:08:24] ID="centos"
[2025-11-28 05:08:24] ID_LIKE="rhel fedora"
[2025-11-28 05:08:24] VERSION_ID="7"
[2025-11-28 05:08:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:08:24] ANSI_COLOR="0;31"
[2025-11-28 05:08:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:08:24] HOME_URL="https://www.centos.org/"
[2025-11-28 05:08:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:08:24] 
[2025-11-28 05:08:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:08:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:08:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:08:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:08:24] 
[2025-11-28 05:08:24] 2025-11-28 08:37:17,281 | INFO     | ***************************************
[2025-11-28 05:08:24] 2025-11-28 08:37:17,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | INFO     | sufficient remaining disk space (76934021120 B)
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | INFO     | update_server=False
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:08:24] 2025-11-28 08:37:17,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:08:24] 2025-11-28 08:37:17,807 | INFO     | aborting loop
[2025-11-28 05:08:24] 2025-11-28 08:37:17,871 | INFO     | all job control threads have been joined
[2025-11-28 05:08:24] 2025-11-28 08:37:18,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:08:24] 2025-11-28 08:37:18,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:08:24] 2025-11-28 08:37:18,525 | INFO     | all data control threads have been joined
[2025-11-28 05:08:24] 2025-11-28 08:37:18,803 | INFO     | all payload control threads have been joined
[2025-11-28 05:08:24] 2025-11-28 08:37:18,816 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:18,823 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:18,877 | INFO     | [job] control thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,453 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,478 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,488 | INFO     | [job] validate thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,531 | INFO     | [data] control thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,809 | INFO     | [payload] control thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,840 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,888 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:19,928 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:20,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:20,110 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:20,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:08:24] 2025-11-28 08:37:20,412 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:21,187 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:22,486 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:08:24] 2025-11-28 08:37:40,148 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:08:24] 2025-11-28 08:37:41,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134613104448)>', '<ExcThread(monitor, started 140134045447936)>']
[2025-11-28 05:08:24] 2025-11-28 08:37:46,693 | INFO     | all workflow threads have been joined
[2025-11-28 05:08:24] 2025-11-28 08:37:46,693 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:08:24] 2025-11-28 08:37:46,693 | INFO     | traces error code: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:46,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:08:24] 2025-11-28 08:37:47,801 | INFO     | PID=2316986 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:08:24] 2025-11-28 08:37:47,801 | INFO     | .. there are 49 such processes running
[2025-11-28 05:08:24] 2025-11-28 08:37:47,802 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:08:24] 2025-11-28 08:37:47,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:08:24] 2025-11-28 08:37:47,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:08:24] 2025-11-28 08:37:47,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:08:24] 2025-11-28 08:37:47,802 | INFO     | [monitor] control thread has ended
[2025-11-28 05:08:24] 2025-11-28 08:37:48,018 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:08:24] 2025-11-28 08:37:48,071 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:08:24] 2025-11-28 08:37:48,341 [wrapper] pilotpid: 2316986
[2025-11-28 05:08:24] 2025-11-28 08:37:48,352 [wrapper] Pilot exit status: 0
[2025-11-28 05:08:24] 2025-11-28 08:37:48,522 [wrapper] pandaids: 6898376964
[2025-11-28 05:08:24] 2025-11-28 08:37:49,854 [wrapper] cleanup supervisor_pilot 2207906 2316987
[2025-11-28 05:08:24] 2025-11-28 08:37:49,916 [wrapper] Test setup, not cleaning
[2025-11-28 05:08:24] 2025-11-28 08:37:49,960 [wrapper] apfmon messages muted
[2025-11-28 05:08:24] 2025-11-28 08:37:49,990 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:08:24] 2025-11-28 08:37:50,054 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:08:24]  *** Error codes and diagnostics ***
[2025-11-28 05:08:24]     "exeErrorCode": 0,
[2025-11-28 05:08:24]     "exeErrorDiag": "",
[2025-11-28 05:08:24]     "pilotErrorCode": 0,
[2025-11-28 05:08:24]     "pilotErrorDiag": "",
[2025-11-28 05:08:24]  *** Listing of results directory ***
[2025-11-28 05:08:24] total 1310188
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:04 pilot3.tar.gz
[2025-11-28 05:08:24] -rwx------. 1 boincer umatlas     36292 Nov 26 11:04 runpilot2-wrapper.sh
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:04 queuedata.json
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:08:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 11:01 run_atlas
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 11:01 job.xml
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas 408912036 Nov 27 11:01 EVNT.47483658._002562.pool.root.1
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:01 start_atlas.sh
[2025-11-28 05:08:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 11:01 shared
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas    590094 Nov 27 11:01 input.tar.gz
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 11:01 boinc_lockfile
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 11:01 pandaJob.out
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas        57 Nov 27 11:01 setup.sh.local
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas    991572 Nov 27 11:01 agis_schedconf.cvmfs.json
[2025-11-28 05:08:24] drwx------. 5 boincer umatlas      4096 Nov 27 11:01 pilot3
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas       533 Nov 28 03:28 boinc_task_state.xml
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas 908991473 Nov 28 03:36 HITS.47556161._005442.pool.root.1
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas      1048 Nov 28 03:36 memory_monitor_summary.json
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas   1516240 Nov 28 03:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas   2132274 Nov 28 03:36 log.47556161._005442.job.log.tgz.1
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas      8590 Nov 28 03:37 heartbeat.json
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas       823 Nov 28 03:37 pilotlog.txt
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas        95 Nov 28 03:37 pilot_heartbeat.json
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas   7772735 Nov 28 03:37 log.47556161._005442.job.log.1
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas       353 Nov 28 03:37 output.list
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas       620 Nov 28 03:37 runtime_log
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas   9922560 Nov 28 03:37 result.tar.gz
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas       660 Nov 28 03:37 sp8LDm5AXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH7MKDmCgmW8m.diag
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 03:37 runtime_log.err
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas      6904 Nov 28 05:00 init_data.xml
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas        29 Nov 28 05:08 wrapper_checkpoint.txt
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 05:08 boinc_mmap_file
[2025-11-28 05:08:24] -rw-r--r--. 1 boincer umatlas     21362 Nov 28 05:08 stderr.txt
[2025-11-28 05:08:24] HITS file was successfully produced:
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas 908991473 Nov 28 03:36 shared/HITS.pool.root.1
[2025-11-28 05:08:24]  *** Contents of shared directory: ***
[2025-11-28 05:08:24] total 1297316
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas 408912036 Nov 27 11:01 ATLAS.root_0
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:01 start_atlas.sh
[2025-11-28 05:08:24] -rw-r--r--. 2 boincer umatlas    590094 Nov 27 11:01 input.tar.gz
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas 908991473 Nov 28 03:36 HITS.pool.root.1
[2025-11-28 05:08:24] -rw-------. 1 boincer umatlas   9922560 Nov 28 03:37 result.tar.gz
05:08:26 (2312648): run_atlas exited; CPU time 191877.307273
05:08:26 (2312648): called boinc_finish(0)

</stderr_txt>
]]>

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