Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:47:37 (4126011): wrapper (7.7.26015): starting
15:47:37 (4126011): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 15:47:37] Arguments: --nthreads 3
[2025-11-27 15:47:37] Threads: 3
[2025-11-27 15:47:37] Checking for CVMFS
[2025-11-27 15:47:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:47:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:47:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:47:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:47:37] 2.9.2.0 3252557 428 69432 153368 1 129 36025421 36864001 0 130560 0 2603980 99.999 18591 11826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 15:47:37] CVMFS is ok
[2025-11-27 15:47:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 15:47:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 15:47:37] Further information can be found at the LHC@home message board.
[2025-11-27 15:47:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:47:37] Checking for apptainer binary...
[2025-11-27 15:47:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:47:37] Running /usr/bin/apptainer --version
[2025-11-27 15:47:37] apptainer version 1.4.1-1.1
[2025-11-27 15:47:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:47:37] thA335
[2025-11-27 15:47:37] apptainer works
[2025-11-27 15:47:37] Set ATHENA_PROC_NUMBER=3
[2025-11-27 15:47:37] Set ATHENA_CORE_NUMBER=3
[2025-11-27 15:47:37] Starting ATLAS job with PandaID=6898377722
[2025-11-27 15:47:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:51:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:51:55] VERSION_ID="7"
[2025-11-27 15:51:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:51:55] ANSI_COLOR="0;31"
[2025-11-27 15:51:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:51:55] HOME_URL="https://www.centos.org/"
[2025-11-27 15:51:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:51:55] 
[2025-11-27 15:51:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:51:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:51:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:51:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:51:55] 
[2025-11-27 15:51:55] 2025-11-27 14:51:03,962 | INFO     | ***************************************
[2025-11-27 15:51:55] 2025-11-27 14:51:04,466 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 15:51:55] 2025-11-27 14:51:04,503 | INFO     | sufficient remaining disk space (825980092416 B)
[2025-11-27 15:51:55] 2025-11-27 14:51:04,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:51:55] 2025-11-27 14:51:04,504 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:51:55] 2025-11-27 14:51:04,505 | INFO     | update_server=False
[2025-11-27 15:51:55] 2025-11-27 14:51:04,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:51:55] 2025-11-27 14:51:04,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:51:55] 2025-11-27 14:51:04,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:51:55] 2025-11-27 14:51:04,674 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:51:55] 2025-11-27 14:51:04,674 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:51:55] 2025-11-27 14:51:04,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:51:55] 2025-11-27 14:51:04,675 | INFO     | will abort loop
[2025-11-27 15:51:55] 2025-11-27 14:51:04,803 | INFO     | all data control threads have been joined
[2025-11-27 15:51:55] 2025-11-27 14:51:05,133 | INFO     | all payload control threads have been joined
[2025-11-27 15:51:55] 2025-11-27 14:51:05,511 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:05,511 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:05,681 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:05,681 | INFO     | all job control threads have been joined
[2025-11-27 15:51:55] 2025-11-27 14:51:05,717 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:05,807 | INFO     | [data] control thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:05,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,093 | INFO     | [job] validate thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,139 | INFO     | [payload] control thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,173 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,240 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,253 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,512 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,687 | INFO     | [job] control thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,763 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:51:55] 2025-11-27 14:51:06,894 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:06,932 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:10,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:51:55] 2025-11-27 14:51:34,379 | INFO     | PID=4129749 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:51:55] 2025-11-27 14:51:34,380 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:51:55] 2025-11-27 14:51:34,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:51:55] 2025-11-27 14:51:34,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:51:55] 2025-11-27 14:51:49,271 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:51:55] 2025-11-27 14:51:50,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215139260224)>', '<ExcThread(monitor, started 140214357972736)>']
[2025-11-27 15:51:55] 2025-11-27 14:51:51,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:51:55] 2025-11-27 14:51:51,471 | INFO     | [monitor] control thread has ended
[2025-11-27 15:51:55] 2025-11-27 14:51:55,676 | INFO     | all workflow threads have been joined
[2025-11-27 15:51:55] 2025-11-27 14:51:55,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:51:55] 2025-11-27 14:51:55,677 | INFO     | traces error code: 0
[2025-11-27 15:51:55] 2025-11-27 14:51:55,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:51:55] 2025-11-27 14:51:55,721 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:51:55] 2025-11-27 14:51:55,724 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:51:55] 2025-11-27 14:51:55,727 [wrapper] pilotpid: 4129749
[2025-11-27 15:51:55] 2025-11-27 14:51:55,730 [wrapper] Pilot exit status: 0
[2025-11-27 15:51:55] 2025-11-27 14:51:55,737 [wrapper] pandaids: 6898377722
[2025-11-27 15:51:55] 2025-11-27 14:51:55,754 [wrapper] cleanup supervisor_pilot 4129755 4129750
[2025-11-27 15:51:55] 2025-11-27 14:51:55,757 [wrapper] Test setup, not cleaning
[2025-11-27 15:51:55] 2025-11-27 14:51:55,760 [wrapper] apfmon messages muted
[2025-11-27 15:51:55] 2025-11-27 14:51:55,763 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:51:55] 2025-11-27 14:51:55,766 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:51:55]  *** Error codes and diagnostics ***
[2025-11-27 15:51:55]     "exeErrorCode": 65,
[2025-11-27 15:51:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:51:55]     "pilotErrorCode": 1305,
[2025-11-27 15:51:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:51:55]  *** Listing of results directory ***
[2025-11-27 15:51:55] total 404328
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-27 15:51:55] -rwx------ 1 boinc boinc     36292 Nov 26 17:29 runpilot2-wrapper.sh
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:29 queuedata.json
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:51:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:47 run_atlas
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:47 job.xml
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc 409837921 Nov 27 15:47 EVNT.47483658._002577.pool.root.1
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc    590103 Nov 27 15:47 input.tar.gz
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:47 start_atlas.sh
[2025-11-27 15:51:55] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:47 shared
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:47 boinc_setup_complete
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      6196 Nov 27 15:47 init_data.xml
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:47 boinc_lockfile
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      2786 Nov 27 15:47 pandaJob.out
[2025-11-27 15:51:55] -rw------- 1 boinc boinc    991580 Nov 27 15:47 agis_schedconf.cvmfs.json
[2025-11-27 15:51:55] -rw------- 1 boinc boinc   1516240 Nov 27 15:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:51:55] drwx------ 5 boinc boinc      4096 Nov 27 15:47 pilot3
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc       523 Nov 27 15:48 boinc_task_state.xml
[2025-11-27 15:51:55] -rw------- 1 boinc boinc       981 Nov 27 15:48 memory_monitor_summary.json
[2025-11-27 15:51:55] -rw------- 1 boinc boinc     56090 Nov 27 15:48 log.47556161._005593.job.log.tgz.1
[2025-11-27 15:51:55] -rw------- 1 boinc boinc        95 Nov 27 15:50 pilot_heartbeat.json
[2025-11-27 15:51:55] -rw------- 1 boinc boinc      8386 Nov 27 15:51 heartbeat.json
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:51 boinc_mmap_file
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc        23 Nov 27 15:51 wrapper_checkpoint.txt
[2025-11-27 15:51:55] -rw------- 1 boinc boinc      4938 Nov 27 15:51 pilotlog.txt
[2025-11-27 15:51:55] -rw------- 1 boinc boinc     92276 Nov 27 15:51 log.47556161._005593.job.log.1
[2025-11-27 15:51:55] -rw------- 1 boinc boinc       186 Nov 27 15:51 output.list
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:51 runtime_log
[2025-11-27 15:51:55] -rw------- 1 boinc boinc    163840 Nov 27 15:51 result.tar.gz
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      8744 Nov 27 15:51 runtime_log.err
[2025-11-27 15:51:55] -rw------- 1 boinc boinc       649 Nov 27 15:51 0SKMDmsZXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmq1JKDmHGVlPm.diag
[2025-11-27 15:51:55] -rw-r--r-- 1 boinc boinc      9152 Nov 27 15:51 stderr.txt
[2025-11-27 15:51:55] No HITS result produced
[2025-11-27 15:51:55]  *** Contents of shared directory: ***
[2025-11-27 15:51:55] total 400996
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc 409837921 Nov 27 15:47 ATLAS.root_0
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc    590103 Nov 27 15:47 input.tar.gz
[2025-11-27 15:51:55] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:47 start_atlas.sh
[2025-11-27 15:51:55] -rw------- 1 boinc boinc    163840 Nov 27 15:51 result.tar.gz
15:51:56 (4126011): run_atlas exited; CPU time 31.551786
15:51:56 (4126011): called boinc_finish(0)

</stderr_txt>
]]>

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