Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:21:32 (1943): wrapper (7.7.26015): starting
09:21:32 (1943): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:21:32] Arguments: --nthreads 8
[2025-11-27 09:21:32] Threads: 8
[2025-11-27 09:21:32] Checking for CVMFS
[2025-11-27 09:21:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:21:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:21:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:21:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:21:33] 2.11.2.0 31887 7941 69944 153368 3 81 13808000 20275201 1 130560 0 2706238 99.978 290145 38292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 09:21:33] CVMFS is ok
[2025-11-27 09:21:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:21:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:21:33] Further information can be found at the LHC@home message board.
[2025-11-27 09:21:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:21:33] Checking for apptainer binary...
[2025-11-27 09:21:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:21:33] Running /usr/bin/apptainer --version
[2025-11-27 09:21:33] apptainer version 1.3.2-1.el7
[2025-11-27 09:21:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:21:34] c-204-12.aglt2.org
[2025-11-27 09:21:34] apptainer works
[2025-11-27 09:21:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:21:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:21:34] Starting ATLAS job with PandaID=6898378199
[2025-11-27 09:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:07:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:07:34] 2025-11-28 03:07:01,729 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 22:07:34] 2025-11-28 03:07:01,733 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-27 22:07:34] 2025-11-28 03:07:01,735 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378199/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,736 | INFO     | extracted standard info from prmon json
[2025-11-27 22:07:34] 2025-11-28 03:07:01,736 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:07:34] 2025-11-28 03:07:01,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:07:34] 2025-11-28 03:07:01,750 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:07:34] 2025-11-28 03:07:01,751 | INFO     | sum of square deviations: 131865281129.38235
[2025-11-27 22:07:34] 2025-11-28 03:07:01,762 | INFO     | sum of deviations: 846338410549.4651
[2025-11-27 22:07:34] 2025-11-28 03:07:01,762 | INFO     | mean x: 1764276251.0864363
[2025-11-27 22:07:34] 2025-11-28 03:07:01,763 | INFO     | mean y: 2875008.408244681
[2025-11-27 22:07:34] 2025-11-28 03:07:01,763 | INFO     | intersect: -11320611699.58735
[2025-11-27 22:07:34] 2025-11-28 03:07:01,764 | INFO     | chi2: 5.148318144523498
[2025-11-27 22:07:34] 2025-11-28 03:07:01,764 | INFO     | sum of square deviations: 129252566642.65073
[2025-11-27 22:07:34] 2025-11-28 03:07:01,776 | INFO     | sum of deviations: 1077547462433.2053
[2025-11-27 22:07:34] 2025-11-28 03:07:01,776 | INFO     | mean x: 1764276098.5903614
[2025-11-27 22:07:34] 2025-11-28 03:07:01,777 | INFO     | mean y: 2888498.6117804553
[2025-11-27 22:07:34] 2025-11-28 03:07:01,777 | INFO     | intersect: -14705455656.15936
[2025-11-27 22:07:34] 2025-11-28 03:07:01,778 | INFO     | chi2: 2.3986743100187056
[2025-11-27 22:07:34] 2025-11-28 03:07:01,778 | INFO     | current chi2=2.3986743100187056 (change=53.40858426610085 %)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,779 | INFO     | sum of square deviations: 126674596993.3963
[2025-11-27 22:07:34] 2025-11-28 03:07:01,791 | INFO     | sum of deviations: 1132003053152.698
[2025-11-27 22:07:34] 2025-11-28 03:07:01,791 | INFO     | mean x: 1764275946.0943396
[2025-11-27 22:07:34] 2025-11-28 03:07:01,791 | INFO     | mean y: 2891711.9757412397
[2025-11-27 22:07:34] 2025-11-28 03:07:01,791 | INFO     | intersect: -15763219292.006943
[2025-11-27 22:07:34] 2025-11-28 03:07:01,792 | INFO     | chi2: 2.1122437946050248
[2025-11-27 22:07:34] 2025-11-28 03:07:01,792 | INFO     | current chi2=2.1122437946050248 (change=11.941200779836056 %)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,792 | INFO     | right removable region: 741
[2025-11-27 22:07:34] 2025-11-28 03:07:01,793 | INFO     | sum of square deviations: 129252297632.65074
[2025-11-27 22:07:34] 2025-11-28 03:07:01,805 | INFO     | sum of deviations: 653690439070.675
[2025-11-27 22:07:34] 2025-11-28 03:07:01,805 | INFO     | mean x: 1764276403.5903614
[2025-11-27 22:07:34] 2025-11-28 03:07:01,805 | INFO     | mean y: 2886233.4270414994
[2025-11-27 22:07:34] 2025-11-28 03:07:01,805 | INFO     | intersect: -8919899960.925909
[2025-11-27 22:07:34] 2025-11-28 03:07:01,806 | INFO     | chi2: 3.182149876720386
[2025-11-27 22:07:34] 2025-11-28 03:07:01,806 | INFO     | current chi2=3.182149876720386 (change=38.19049663616098 %)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,807 | INFO     | sum of square deviations: 126674149985.7675
[2025-11-27 22:07:34] 2025-11-28 03:07:01,818 | INFO     | sum of deviations: 609065349792.1895
[2025-11-27 22:07:34] 2025-11-28 03:07:01,819 | INFO     | mean x: 1764276556.0916443
[2025-11-27 22:07:34] 2025-11-28 03:07:01,819 | INFO     | mean y: 2888871.820754717
[2025-11-27 22:07:34] 2025-11-28 03:07:01,819 | INFO     | intersect: -8479976163.285848
[2025-11-27 22:07:34] 2025-11-28 03:07:01,820 | INFO     | chi2: 3.137592258501954
[2025-11-27 22:07:34] 2025-11-28 03:07:01,820 | INFO     | current chi2=3.137592258501954 (change=1.4002363164727656 %)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,820 | INFO     | left removable region: 20
[2025-11-27 22:07:34] 2025-11-28 03:07:01,821 | INFO     | sum of square deviations: 116220616183.15953
[2025-11-27 22:07:34] 2025-11-28 03:07:01,827 | INFO     | monitor loop #3377: job 0:6898378199 is in state 'finished'
[2025-11-27 22:07:34] 2025-11-28 03:07:01,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,833 | INFO     | sum of deviations: 838541356917.0447
[2025-11-27 22:07:34] 2025-11-28 03:07:01,833 | INFO     | mean x: 1764276525.5991678
[2025-11-27 22:07:34] 2025-11-28 03:07:01,833 | INFO     | mean y: 2909103.0762829403
[2025-11-27 22:07:34] 2025-11-28 03:07:01,833 | INFO     | intersect: -12726491930.397022
[2025-11-27 22:07:34] 2025-11-28 03:07:01,834 | INFO     | chi2: 0.07744383577565621
[2025-11-27 22:07:34] 2025-11-28 03:07:01,834 | INFO     | current memory leak: 7.22 B/s (using 721 data points, chi2=0.08)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,835 | INFO     | could have reported an average CPU frequency of 2153 MHz (29 samples)
[2025-11-27 22:07:34] 2025-11-28 03:07:01,835 | INFO     | ..............................
[2025-11-27 22:07:34] 2025-11-28 03:07:01,835 | INFO     | . Timing measurements:
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . get job = 0 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . initial setup = 2 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . payload setup = 8 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . stage-in = 0 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . payload execution = 45865 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . stage-out = 4 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | . log creation = 0 s
[2025-11-27 22:07:34] 2025-11-28 03:07:01,836 | INFO     | ..............................
[2025-11-27 22:07:34] 2025-11-28 03:07:02,279 | INFO     | 
[2025-11-27 22:07:34] 2025-11-28 03:07:02,280 | INFO     | job summary report
[2025-11-27 22:07:34] 2025-11-28 03:07:02,280 | INFO     | --------------------------------------------------
[2025-11-27 22:07:34] 2025-11-28 03:07:02,280 | INFO     | PanDA job id: 6898378199
[2025-11-27 22:07:34] 2025-11-28 03:07:02,280 | INFO     | task id: 47556161
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | errors: (none)
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | pilot state: finished 
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | transexitcode: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | exeerrorcode: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:02,281 | INFO     | exeerrordiag: 
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | exitcode: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | exitmsg: OK
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | cpuconsumptiontime: 353895 s
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | nevents: 1000
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | neventsw: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:02,282 | INFO     | pid: 12155
[2025-11-27 22:07:34] 2025-11-28 03:07:02,283 | INFO     | pgrp: 12155
[2025-11-27 22:07:34] 2025-11-28 03:07:02,283 | INFO     | corecount: 8
[2025-11-27 22:07:34] 2025-11-28 03:07:02,283 | INFO     | event service: False
[2025-11-27 22:07:34] 2025-11-28 03:07:02,283 | INFO     | sizes: {0: 2284145, 1: 2284344, 7: 2284606, 11: 2284634, 45878: 2330920, 45882: 2339914, 45884: 2340098, 45892: 2340344}
[2025-11-27 22:07:34] 2025-11-28 03:07:02,283 | INFO     | --------------------------------------------------
[2025-11-27 22:07:34] 2025-11-28 03:07:02,284 | INFO     | 
[2025-11-27 22:07:34] 2025-11-28 03:07:02,284 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 22:07:34] 2025-11-28 03:07:02,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,316 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:07:34] 2025-11-28 03:07:02,317 | INFO     | job 6898378199 has completed (purged errors)
[2025-11-27 22:07:34] 2025-11-28 03:07:02,317 | INFO     | overall cleanup function is called
[2025-11-27 22:07:34] 2025-11-28 03:07:03,328 | INFO     | --- collectZombieJob: --- 10, [12155]
[2025-11-27 22:07:34] 2025-11-28 03:07:03,328 | INFO     | zombie collector waiting for pid 12155
[2025-11-27 22:07:34] 2025-11-28 03:07:03,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:07:34] 2025-11-28 03:07:03,329 | INFO     | collected zombie processes
[2025-11-27 22:07:34] 2025-11-28 03:07:03,329 | INFO     | will attempt to kill all subprocesses of pid=12155
[2025-11-27 22:07:34] 2025-11-28 03:07:03,421 | INFO     | process IDs to be killed: [12155] (in reverse order)
[2025-11-27 22:07:34] 2025-11-28 03:07:03,482 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:07:34] 2025-11-28 03:07:03,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:07:34] 2025-11-28 03:07:03,487 | INFO     | did not find any defunct processes belonging to 12155
[2025-11-27 22:07:34] 2025-11-28 03:07:03,490 | INFO     | did not find any defunct processes belonging to 12155
[2025-11-27 22:07:34] 2025-11-28 03:07:03,493 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:07:34] 2025-11-28 03:07:03,493 | INFO     | ready for new job
[2025-11-27 22:07:34] 2025-11-28 03:07:03,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:07:34] 2025-11-28 03:07:03,498 | INFO     | ***************************************
[2025-11-27 22:07:34] 2025-11-28 03:07:03,498 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:07:34] 2025-11-28 03:07:03,498 | INFO     | ***************************************
[2025-11-27 22:07:34] 2025-11-28 03:07:03,498 | INFO     | 
[2025-11-27 22:07:34] 2025-11-28 03:07:03,499 | INFO     | architecture information:
[2025-11-27 22:07:34] 2025-11-28 03:07:03,500 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:07:34] 2025-11-28 03:07:03,518 | INFO     | cat /etc/os-release:
[2025-11-27 22:07:34] NAME="CentOS Linux"
[2025-11-27 22:07:34] VERSION="7 (Core)"
[2025-11-27 22:07:34] ID="centos"
[2025-11-27 22:07:34] ID_LIKE="rhel fedora"
[2025-11-27 22:07:34] VERSION_ID="7"
[2025-11-27 22:07:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:07:34] ANSI_COLOR="0;31"
[2025-11-27 22:07:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:07:34] HOME_URL="https://www.centos.org/"
[2025-11-27 22:07:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:07:34] 
[2025-11-27 22:07:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:07:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:07:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:07:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:07:34] 
[2025-11-27 22:07:34] 2025-11-28 03:07:03,518 | INFO     | ***************************************
[2025-11-27 22:07:34] 2025-11-28 03:07:04,021 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 22:07:34] 2025-11-28 03:07:04,044 | INFO     | sufficient remaining disk space (17473470464 B)
[2025-11-27 22:07:34] 2025-11-28 03:07:04,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:07:34] 2025-11-28 03:07:04,045 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:07:34] 2025-11-28 03:07:04,045 | INFO     | update_server=False
[2025-11-27 22:07:34] 2025-11-28 03:07:04,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:07:34] 2025-11-28 03:07:04,336 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 22:07:34] 2025-11-28 03:07:04,336 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 22:07:34] 2025-11-28 03:07:04,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:07:34] 2025-11-28 03:07:04,337 | INFO     | will abort loop
[2025-11-27 22:07:34] 2025-11-28 03:07:04,366 | INFO     | all data control threads have been joined
[2025-11-27 22:07:34] 2025-11-28 03:07:04,515 | INFO     | all job control threads have been joined
[2025-11-27 22:07:34] 2025-11-28 03:07:04,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:07:34] 2025-11-28 03:07:04,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:07:34] 2025-11-28 03:07:05,051 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,089 | INFO     | all payload control threads have been joined
[2025-11-27 22:07:34] 2025-11-28 03:07:05,179 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,336 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,342 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,372 | INFO     | [data] control thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,520 | INFO     | [job] control thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,789 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:05,836 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,094 | INFO     | [payload] control thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,341 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,345 | INFO     | [job] validate thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,447 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,505 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:06,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:07:34] 2025-11-28 03:07:06,992 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:07,951 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:08,732 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:07:34] 2025-11-28 03:07:08,922 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:07:34] 2025-11-28 03:07:09,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140488747665216)>', '<ExcThread(monitor, started 140488153745152)>']
[2025-11-27 22:07:34] 2025-11-28 03:07:14,143 | INFO     | all workflow threads have been joined
[2025-11-27 22:07:34] 2025-11-28 03:07:14,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:07:34] 2025-11-28 03:07:14,144 | INFO     | traces error code: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:14,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:07:34] 2025-11-28 03:07:33,730 | INFO     | PID=5722 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 22:07:34] 2025-11-28 03:07:33,731 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:07:34] 2025-11-28 03:07:33,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:07:34] 2025-11-28 03:07:33,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:07:34] 2025-11-28 03:07:33,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:07:34] 2025-11-28 03:07:33,732 | INFO     | [monitor] control thread has ended
[2025-11-27 22:07:34] 2025-11-28 03:07:33,844 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:07:34] 2025-11-28 03:07:33,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:07:34] 2025-11-28 03:07:33,854 [wrapper] pilotpid: 5722
[2025-11-27 22:07:34] 2025-11-28 03:07:33,859 [wrapper] Pilot exit status: 0
[2025-11-27 22:07:34] 2025-11-28 03:07:33,875 [wrapper] pandaids: 6898378199
[2025-11-27 22:07:34] 2025-11-28 03:07:33,923 [wrapper] cleanup supervisor_pilot 23595 5723
[2025-11-27 22:07:34] 2025-11-28 03:07:33,928 [wrapper] Test setup, not cleaning
[2025-11-27 22:07:34] 2025-11-28 03:07:33,932 [wrapper] apfmon messages muted
[2025-11-27 22:07:34] 2025-11-28 03:07:33,937 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:07:34] 2025-11-28 03:07:33,941 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:07:34]  *** Error codes and diagnostics ***
[2025-11-27 22:07:34]     "exeErrorCode": 0,
[2025-11-27 22:07:34]     "exeErrorDiag": "",
[2025-11-27 22:07:34]     "pilotErrorCode": 0,
[2025-11-27 22:07:34]     "pilotErrorDiag": "",
[2025-11-27 22:07:34]  *** Listing of results directory ***
[2025-11-27 22:07:34] total 1314184
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 22:07:34] -rwx------ 1 boincer umatlas     36292 Nov 26 11:35 runpilot2-wrapper.sh
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:35 queuedata.json
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas       100 Nov 27 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:07:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 09:21 run_atlas
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas       105 Nov 27 09:21 job.xml
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas 408498303 Nov 27 09:21 EVNT.47483658._002594.pool.root.1
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 09:21 start_atlas.sh
[2025-11-27 22:07:34] drwxrwx--x 2 boincer umatlas      4096 Nov 27 09:21 shared
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas    590098 Nov 27 09:21 input.tar.gz
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas         0 Nov 27 09:21 boinc_lockfile
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 09:21 pandaJob.out
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas        57 Nov 27 09:21 setup.sh.local
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas    991580 Nov 27 09:21 agis_schedconf.cvmfs.json
[2025-11-27 22:07:34] drwx------ 5 boincer umatlas      4096 Nov 27 09:21 pilot3
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas       533 Nov 27 21:56 boinc_task_state.xml
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 22:01 init_data.xml
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas 916653719 Nov 27 22:06 HITS.47556161._005762.pool.root.1
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas      1064 Nov 27 22:06 memory_monitor_summary.json
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas   1516240 Nov 27 22:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas   2003841 Nov 27 22:06 log.47556161._005762.job.log.tgz.1
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas      8657 Nov 27 22:07 heartbeat.json
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 22:07 boinc_mmap_file
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas        29 Nov 27 22:07 wrapper_checkpoint.txt
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas        95 Nov 27 22:07 pilot_heartbeat.json
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas       744 Nov 27 22:07 pilotlog.txt
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas   6318623 Nov 27 22:07 log.47556161._005762.job.log.1
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas       353 Nov 27 22:07 output.list
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas       620 Nov 27 22:07 runtime_log
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas   8345600 Nov 27 22:07 result.tar.gz
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 22:07 runtime_log.err
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas       668 Nov 27 22:07 6mtNDmefXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx9MKDmRZahVo.diag
[2025-11-27 22:07:34] -rw-r--r-- 1 boincer umatlas     21298 Nov 27 22:07 stderr.txt
[2025-11-27 22:07:34] HITS file was successfully produced:
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas 916653719 Nov 27 22:06 shared/HITS.pool.root.1
[2025-11-27 22:07:34]  *** Contents of shared directory: ***
[2025-11-27 22:07:34] total 1302856
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas 408498303 Nov 27 09:21 ATLAS.root_0
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 09:21 start_atlas.sh
[2025-11-27 22:07:34] -rw-r--r-- 2 boincer umatlas    590098 Nov 27 09:21 input.tar.gz
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas 916653719 Nov 27 22:06 HITS.pool.root.1
[2025-11-27 22:07:34] -rw------- 1 boincer umatlas   8345600 Nov 27 22:07 result.tar.gz
22:07:35 (1943): run_atlas exited; CPU time 350036.316743
22:07:35 (1943): called boinc_finish(0)

</stderr_txt>
]]>

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